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@jiajic jiajic released this 29 Nov 21:58
· 415 commits to main since this release
v0.1.0
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Learn about vigilant mode.

Released with Giotto v4.0.0

Giotto Class 0.1.0 (23/11/28)

Breaking Changes

  • Giotto subsetting rework

Added

  • Added terraVectData as virtual parent class for giottoPolygon and giottoPoints classes
  • Added $ and $<- methods for terraVectData
  • Added ext<-() method for giottoPolygon, giottoPoints
  • Added crop() method for giottoLargeImage, giottoPoints
  • Added [ subsetting for giottoPoints and giottoPolygon with numerical, logical, and character (by ID)
  • Added as.sf() and as.stars() converters for giottoPoints and giottoPolygon
  • Added setGiotto() generic
  • Added gap param to tessellate() which introduces a variable gap between the polygons tessellated
  • Added triGrid()
  • Added orthoGrid()
  • Added DelayedMatrixStats to suggests

Changes

  • Improved performance of gefToGiotto()
  • Updated spatIDs() and featIDs() methods for giottoPolygon and giottoPoints to allow returning non-unique IDs
  • Added check for plot() when giottoPolygon or giottoPoints objects contain no geometries
  • Added warning for crop() when giottoLargeImage, giottoPolygon, giottoPoints objects are being cropped with an extent that does not include any information
  • Changed: Conversion of createGiottoPoints() to a generic function
  • Deprecate: radius param in favor of shape_size for tessellate()
  • Fixed: python install_github_link_pip() param
  • Fixed: python create_Anndata added to globals.R
Assets 2