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DESCRIPTION
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DESCRIPTION
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Package: myTAI
Type: Package
Title: Evolutionary Transcriptomics
Version: 1.0.1.0000
Date: 2021-06-06
Authors@R: c(person("Hajk-Georg", "Drost",
role = c("aut", "cre"),
email = "hajk-georg.drost@tuebingen.mpg.de",
comment = c(ORCID = "http://orcid.org/0000-0002-1567-306X")),
person(given = "Kristian K",
family = "Ullrich",
role = c("aut", "ctb"),
email = "ullrich@evolbio.mpg.de",
comment = c(ORCID = "0000-0003-4308-9626")))
Description: Investigate the evolution of biological processes by capturing evolutionary signatures in transcriptomes (Drost et al. (2017) <doi:10.1093/bioinformatics/btx835>). The aim of this tool is to provide a transcriptome analysis environment to quantify the average evolutionary age of genes contributing to a transcriptome of interest (Drost et al. (2016) <doi:10.1101/051565>).
VignetteBuilder: knitr
NeedsCompilation: yes
License: GPL-3
Depends:
R (>= 3.1.1)
Imports:
Rcpp,
nortest (>= 1.0-2),
fitdistrplus (>= 1.1-5),
parallel (>= 3.1.1),
foreach (>= 1.4.2),
doParallel (>= 1.0.8),
dplyr (>= 0.3.0),
RColorBrewer (>= 1.1-2),
methods (>= 3.1.1),
graphics (>= 3.1.1),
stats (>= 3.1.1),
grDevices (>= 3.1.1),
utils (>= 3.1.1),
reshape2 (>= 1.4.1),
ggplot2 (>= 1.0.1),
readr (>= 0.2.2),
tibble,
scales,
gridExtra,
Matrix,
decor,
RcppThread
Suggests:
knitr (>= 1.6),
rmarkdown (>= 0.3.3),
devtools (>= 1.6.1),
testthat (>= 0.9.1),
mgcv,
taxize (>= 0.6.0),
Seurat,
DESeq2 (>= 1.29.15)
LinkingTo:
RcppArmadillo,
Rcpp,
cpp11,
RcppThread
URL: https://github.com/drostlab/myTAI
BugReports: https://github.com/drostlab/myTAI/issues
RoxygenNote: 7.2.3
Encoding: UTF-8
SystemRequirements: C++11