Fix #12225: revert OVERWRITE_OR_IGNORE to previous behavior, move new behavior to OVERWRITE flag #12577

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Run time

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Job	Run time
Linux (x64)	2h 12m 3s
Amalgamation Tests	1m 54s
Linux HTTPFS	25m 13s
Linux Extensions (x64)	1h 2m 28s
Linux Extensions (aarch64)	0s
Symbol Leakage	23m 29s
Linux (aarch64)	0s
Checks extension entries	10m 31s
	4h 15m 38s