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Following code prints out the expression trends for the gold standard
plot_gold_expression(model, what = "mol_mrna") # mrna
Is there a way to plot the expression of a single mol_mrna throughout all the cell states/lineages? I want to examine how a particular mol_mrna changes its expression trends in different lineages.
The text was updated successfully, but these errors were encountered:
spriyansh
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Ground truth expression trends for mol_mrna in different cell states
Ground truth expression trends for mol_mrna in different cell lineages
Jan 6, 2024
Do you have any updates on how to look for the actual expression of genes across lineages in pseudotime? I want to use this information as a ground truth for the differential expression method. For example, Splatter provides a table with fold changes, using which we can infer which gene is differentially expressed in which lineage.
Is something like this available in Dyngen? Using the GRN (model$feature_network), I can only look for TF modules, but what about the expression trends of Target genes? How can we know the actual expression of them?
How can we elucidate the ground truth for the mol_mrna from the dyngen object?
I am following the tutorial here.
Following code prints out the expression trends for the gold standard
Is there a way to plot the expression of a single mol_mrna throughout all the cell states/lineages? I want to examine how a particular mol_mrna changes its expression trends in different lineages.
The text was updated successfully, but these errors were encountered: