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I want to change the plotting order in accordance to the expression level of a certain gene/set of genes:
cells expressing a certain gene at a higher level are plotted on top of those expressing it at a lower level.
Because I see that with the current plotting scheme the cells with low expression are often plotted above the cells with high expression of a certain gene.
In Seurat, for instance, the plotting order can be controlled with an argument called order
I want to change the plotting order in accordance to the expression level of a certain gene/set of genes:
cells expressing a certain gene at a higher level are plotted on top of those expressing it at a lower level.
Because I see that with the current plotting scheme the cells with low expression are often plotted above the cells with high expression of a certain gene.
In Seurat, for instance, the plotting order can be controlled with an argument called
order
When
order=F
When ordering is to be done:
For the ggplot2, the basis of our
plot_dimred
, I found this post and tried both answers, none worked.Reproducible example:
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