Integrated and interactive software for single-cell RNA-seq data analysis.
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These instructions will get you a copy of the software up and running on HPC or local machine.
R (>= 3.4)
Drop-seq_tools (>= 2.0)
Seurat (>= 2.3)
-> To install from R or Rstudio, run the following code:
(1) First, install package “devtools”:
if (!require("devtools"))
install.packages("devtools")(2) Then, install seqExplorer:
devtools::install_github('dyxmvp/seqExplorer')-> To install from HPC, see this guide for more details.
Enter commands in R or R studio:
library(seqExplorer)
seqExplorer()seq-Explorer is developed and maintained by Yanxiang Deng@Rong Fan Lab, BME, Yale University. The software is licensed under the GPL-3.0. See the LICENSE file for more details.
seq-Explorer is hosted at Github. Please e-mail yanxiang.deng@yale.edu or submit pull requests from the Github with any questions about the software.