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@dznetubingen

dznetuebingen

German Center for Neurodegenerative Diseases Tübingen
  • Tübingen, Germany

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  1. scaden scaden Public

    Forked from KevinMenden/scaden

    Repository of the Scaden tool for cell type deconvolution of RNA-seq data.

    Python

  2. cageseq cageseq Public

    Forked from nf-core/cageseq

    nf-core cageseq pipeline

    Nextflow

  3. hybrid-assembly hybrid-assembly Public

    Forked from KevinMenden/hybrid-assembly

    Pipeline for hybrid assembly using short and long reads.

    Nextflow

  4. tf-activity tf-activity Public

    Forked from KevinMenden/tf-activity

    Workflow to identify active transcription factors from CAGE-seq data.

    Nextflow

Repositories

Showing 10 of 16 repositories
  • rimod-ftd-dataset Public

    This Repository contains code associated with the RiMod-FTD dataset.

    dznetubingen/rimod-ftd-dataset’s past year of commit activity
    R 0 0 0 0 Updated Oct 25, 2022
  • GP2 Public

    All the GP2 pipelines

    dznetubingen/GP2’s past year of commit activity
    WDL 1 MIT 1 0 0 Updated Aug 26, 2022
  • quanTEr Public

    Nextflow pipeline for QC, mapping and quantificaton of bulk RNAseq on genic and transposon levels.

    dznetubingen/quanTEr’s past year of commit activity
    Nextflow 0 0 0 0 Updated May 31, 2022
  • analysis_scripts Public

    Analysis scripts

    dznetubingen/analysis_scripts’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Jan 4, 2021
  • rimod-ftd-paper Public

    Scripts used for the analyses in the RiMod-FTD Phase 1 Paper.

    dznetubingen/rimod-ftd-paper’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Oct 16, 2020
  • nanopore-enrichment Public Forked from TrisKast/Cas_mediated_enrichment_read_mapping_pipeline

    Evaluation of read-mapping characteristics from a Cas-mediated PCR-free enrichment

    dznetubingen/nanopore-enrichment’s past year of commit activity
    R 0 1 0 0 Updated Oct 13, 2020
  • hybrid-assembly Public Forked from KevinMenden/hybrid-assembly

    Pipeline for hybrid assembly using short and long reads.

    dznetubingen/hybrid-assembly’s past year of commit activity
    Nextflow 0 MIT 5 0 0 Updated Apr 8, 2020
  • containers Public

    Repository to hold Dockerfiles for certain containers. So that not everyone has to rebuild containters all the time.

    dznetubingen/containers’s past year of commit activity
    Dockerfile 0 0 0 0 Updated Mar 6, 2020
  • cageseq-pipeline-mf Public

    CAGE-seq processing pipeline from Margherita Francescatto

    dznetubingen/cageseq-pipeline-mf’s past year of commit activity
    Python 1 0 0 0 Updated Feb 6, 2020
  • rstudio-dzne Public

    Contains Dockerfile and additional scripts for the Rstudio server instance

    dznetubingen/rstudio-dzne’s past year of commit activity
    R 0 MIT 0 0 0 Updated Jul 9, 2019
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