PICRUSt 2.0.4-BETA

Table of Contents

Basic information

Note

Official installation instructions can be found in https://github.com/picrust/picrust2/blob/master/INSTALL.md.

You should follow the following procedure in order to install this software on a conda environment, without root privileges.

Load conda module. On :ref:`Apolo II <about_apolo-ii>` is python/3.6.5_miniconda-4.5.1, on :ref:`Cronos <about_cronos>` python/3.6.5_miniconda-4.5.4.
```
$ module load <conda_module>
```
Note

Be aware you can also try out the intel optimized conda modules, which are proved to increase performance in several applications: on :ref:`Apolo II <about_apolo-ii>` is python/3.5.2_intel-2017_update-1, on :ref:`Cronos <about_cronos>` is python/3.6.2_intel-18_u1.
Clone PICRUSt2 repository and cd into it:
```
$ git clone https://github.com/picrust/picrust2.git
$ cd picrust2
```
Note

All the following commands should be executed inside the "picrust2" directory!.
Install the required dependencies into a conda environment. This will create a conda environment named picrust2 in which the dependencies will be installed:
```
$ conda env create -f picrust2-env.yaml
```

Activate the conda environment and finish installing PICRUSt2:

$ source activate picrust2
$ pip install --no-deps --editable .