Merge pull request #224 from boegel/contribute_bamtools

add support for BamTools

easybuild/easyblocks/b/bamtools.py

@@ -0,0 +1,66 @@
+##
+# Copyright 2009-2013 The Cyprus Institute 
+#
+# This file is part of EasyBuild,
+# originally created by the HPC team of Ghent University (http://ugent.be/hpc/en),
+# with support of Ghent University (http://ugent.be/hpc),
+# the Flemish Supercomputer Centre (VSC) (https://vscentrum.be/nl/en),
+# the Hercules foundation (http://www.herculesstichting.be/in_English)
+# and the Department of Economy, Science and Innovation (EWI) (http://www.ewi-vlaanderen.be/en).
+#
+# http://github.com/hpcugent/easybuild
+#
+# EasyBuild is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation v2.
+#
+# EasyBuild is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with EasyBuild.  If not, see <http://www.gnu.org/licenses/>.
+##
+"""
+EasyBuild support for BamTools, implemented as an easyblock
+
+@author: Andreas Panteli (The Cyprus Institute)
+@author: Kenneth Hoste (Ghent University)
+"""
+import os
+
+from easybuild.easyblocks.generic.cmakemake import CMakeMake
+from easybuild.easyblocks.generic.makecp import MakeCp
+from easybuild.tools.filetools import mkdir
+from easybuild.tools.systemtools import get_shared_lib_ext
+
+
+class EB_BamTools(MakeCp, CMakeMake):
+    """Support for building and installing BamTools."""
+
+    def configure_step(self):
+        """Configure BamTools build."""
+        # BamTools requires an out of source build.
+        try:
+            builddir = os.path.join(self.cfg['start_dir'], 'build')
+            mkdir(builddir)
+            os.chdir(builddir)
+        except OSError, err:
+            self.log.error("")
+
+        CMakeMake.configure_step(self, srcdir='..')
+
+    def sanity_check_step(self):
+        """Custom sanity check for BamTools."""
+
+        sharedlib_ext = get_shared_lib_ext()
+
+        custom_paths = {
+            'files': ["bin/bamtools", "include/shared/bamtools_global.h", "lib/libbamtools.a",
+                      "lib/libbamtools.%s" % sharedlib_ext, "lib/libbamtools-utils.%s" % sharedlib_ext,
+                      "lib/libjsoncpp.%s" % sharedlib_ext],
+            'dirs': ["include/api", "docs"]
+        }
+
+        super(EB_BamTools, self).sanity_check_step(custom_paths=custom_paths)