Merge pull request #3910 from rug-cit-ris/psmc_065_foss_2016a

{bio}[foss/2016a] psmc 0.6.5

easybuild/easyconfigs/p/psmc/psmc-0.6.5-foss-2016a.eb

@@ -0,0 +1,32 @@
+easyblock = 'MakeCp'
+
+name = 'psmc'
+version = '0.6.5'
+
+homepage = 'https://github.com/lh3/psmc'
+description = """This software package infers population size history from a diploid sequence
+using the Pairwise Sequentially Markovian Coalescent (PSMC) model."""
+
+toolchain = {'name': 'foss', 'version': '2016a'}
+
+source_urls = ['https://github.com/lh3/psmc/archive/']
+sources = ['%(version)s.tar.gz']
+
+buildopts = '&& cd utils && make'
+
+utils = [
+    'avg.pl', 'calD', 'cntcpg', 'ctime_plot.pl', 'dec2ctime.pl', 'decode2bed.pl', 'fq2psmcfa', 'history2ms.pl',
+    'ms2psmcfa.pl', 'mutDiff', 'pcnt_bezier.lua', 'psmc2history.pl', 'psmc_plot.pl', 'psmc_trunc.pl', 'splitfa', 
+]
+
+files_to_copy = [
+    (['psmc'], 'bin'),
+    (['utils/%s' % util for util in utils], 'bin')
+]
+
+sanity_check_paths = {
+    'files': ['bin/psmc'] + ['bin/%s' % util for util in utils],
+    'dirs': [],
+}
+
+moduleclass = 'bio'