Disable OpenMPI binding when running tests

easybuilders · Aug 11, 2023 · ce0960c · ce0960c
1 parent 8e7ad30
commit ce0960c
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Showing 4 changed files with 32 additions and 12 deletions.
diff --git a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-4.2.1-foss-2021a-CUDA-11.3.1.eb b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-4.2.1-foss-2021a-CUDA-11.3.1.eb
@@ -29,9 +29,14 @@ dependencies = [
 ]
 
 configopts = ' -DCMAKE_SKIP_RPATH=OFF -DWITH_TESTS=ON -DWITH_CUDA=ON '
-configopts += '-DCTEST_ARGS:STRING=-j%(parallel)s '
-
-runtest = '-j%(parallel)s check_unit_tests && make check_python'
+configopts += '-DCTEST_ARGS:STRING=-j%(parallel)s -DTEST_TIMEOUT=1200 '
+
+# Avoid that ESPResSo tests all get bound to the first core
+# see https://github.com/easybuilders/easybuild-easyconfigs/pull/18517#issuecomment-1674612814
+local_OMPI_test_vars = 'OMPI_MCA_hwloc_base_binding_policy=none '
+pretestopts = local_OMPI_test_vars
+runtest = '-j%(parallel)s check_unit_tests '
+runtest += '&& %s make check_python' % local_OMPI_test_vars
 
 modextrapaths = {'PYTHONPATH': ['lib/python%(pyshortver)s/site-packages']}
 

diff --git a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-4.2.1-foss-2021a.eb b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-4.2.1-foss-2021a.eb
@@ -27,9 +27,14 @@ dependencies = [
 ]
 
 configopts = ' -DCMAKE_SKIP_RPATH=OFF -DWITH_TESTS=ON -DWITH_CUDA=OFF '
-configopts += '-DCTEST_ARGS:STRING=-j%(parallel)s '
-
-runtest = '-j%(parallel)s check_unit_tests && make check_python'
+configopts += '-DCTEST_ARGS:STRING=-j%(parallel)s -DTEST_TIMEOUT=1200 '
+
+# Avoid that ESPResSo tests all get bound to the first core
+# see https://github.com/easybuilders/easybuild-easyconfigs/pull/18517#issuecomment-1674612814
+local_OMPI_test_vars = 'OMPI_MCA_hwloc_base_binding_policy=none '
+pretestopts = local_OMPI_test_vars
+runtest = '-j%(parallel)s check_unit_tests '
+runtest += '&& %s make check_python' % local_OMPI_test_vars
 
 modextrapaths = {'PYTHONPATH': ['lib/python%(pyshortver)s/site-packages']}
 

diff --git a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-4.2.1-foss-2022a-CUDA-11.8.0.eb b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-4.2.1-foss-2022a-CUDA-11.8.0.eb
@@ -29,9 +29,14 @@ dependencies = [
 ]
 
 configopts = ' -DCMAKE_SKIP_RPATH=OFF -DWITH_TESTS=ON -DWITH_CUDA=ON '
-configopts += '-DCTEST_ARGS:STRING=-j%(parallel)s '
-
-runtest = '-j%(parallel)s check_unit_tests && make check_python'
+configopts += '-DCTEST_ARGS:STRING=-j%(parallel)s -DTEST_TIMEOUT=1200 '
+
+# Avoid that ESPResSo tests all get bound to the first core
+# see https://github.com/easybuilders/easybuild-easyconfigs/pull/18517#issuecomment-1674612814
+local_OMPI_test_vars = 'OMPI_MCA_hwloc_base_binding_policy=none '
+pretestopts = local_OMPI_test_vars
+runtest = '-j%(parallel)s check_unit_tests '
+runtest += '&& %s make check_python' % local_OMPI_test_vars
 
 modextrapaths = {'PYTHONPATH': ['lib/python%(pyshortver)s/site-packages']}
 

diff --git a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-4.2.1-foss-2022a.eb b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-4.2.1-foss-2022a.eb
@@ -27,9 +27,14 @@ dependencies = [
 ]
 
 configopts = ' -DCMAKE_SKIP_RPATH=OFF -DWITH_TESTS=ON -DWITH_CUDA=OFF '
-configopts += '-DCTEST_ARGS:STRING=-j%(parallel)s '
-
-runtest = '-j%(parallel)s check_unit_tests && make check_python'
+configopts += '-DCTEST_ARGS:STRING=-j%(parallel)s -DTEST_TIMEOUT=1200 '
+
+# Avoid that ESPResSo tests all get bound to the first core
+# see https://github.com/easybuilders/easybuild-easyconfigs/pull/18517#issuecomment-1674612814
+local_OMPI_test_vars = 'OMPI_MCA_hwloc_base_binding_policy=none '
+pretestopts = local_OMPI_test_vars
+runtest = '-j%(parallel)s check_unit_tests '
+runtest += '&& %s make check_python' % local_OMPI_test_vars
 
 modextrapaths = {'PYTHONPATH': ['lib/python%(pyshortver)s/site-packages']}