{toolchain} foss/2020b #11489

boegel · 2020-10-13T19:58:07Z

(created using eb --new-pr)

Still WIP because:

maybe we should use OpenBLAS 0.3.12 rather than a patched OpenBLAS 0.3.11?
~~ScaLAPACK 2.1.0 doesn't compile with GCC 10.2~~
- fixed upstream in Fix argument mismatches for implicitly defined functions (gcc-10 compat) Reference-ScaLAPACK/scalapack#26, but this relies on building ScaLAPACK with CMake, which we're not doing currently...

requires:

updated ScaLAPACK easyblock ~~update ScaLAPACK easyblock to support installation with CMake for recent versions (>= v2.1.0) easybuild-easyblocks#2205~~

zao · 2020-10-18T12:44:27Z

Test report by @zao
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
freja - Linux Ubuntu 20.04, x86_64, Intel(R) Core(TM) i7-8700K CPU @ 3.70GHz (skylake), Python 3.8.5
See https://gist.github.com/0a1e59fadba7ce3b03e82b4679f91f5a for a full test report.

bartoldeman · 2020-10-18T17:22:04Z

Test report by @bartoldeman
FAILED
Build succeeded for 0 out of 1 (1 easyconfigs in this PR)
build-node.computecanada.ca - Linux centos linux 7.8.2003, x86_64, Intel Xeon Processor (Skylake, IBRS), Python 3.7.7
See https://gist.github.com/cbc75a5143babbb14cf7a93f2cd60672 for a full test report.

branfosj · 2020-10-18T18:02:12Z

Test report by @branfosj
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
bear-pg0306u19a.bear.cluster - Linux RHEL 8.2, POWER, 8335-GTX (power9le), Python 3.6.8
See https://gist.github.com/f2a7d5aafe02a785b09215796e73f5f5 for a full test report.

branfosj · 2020-10-18T18:03:26Z

Test report by @branfosj
FAILED
Build succeeded for 0 out of 1 (1 easyconfigs in total)
bear-pg0211u03a.bear.cluster - Linux centos linux 7.8.2003, x86_64, Intel(R) Xeon(R) Gold 6248 CPU @ 2.50GHz (cascadelake), Python 3.6.8
See https://gist.github.com/3330cb6c8edba715604e49f8b2300f40 for a full test report.

boegel · 2020-10-19T16:23:42Z

@boegelbot please test @ generoso
EB_ARGS="--include-easyblocks-from-pr 2205"

boegelbot · 2020-10-19T16:25:08Z

@boegel: Request for testing this PR well received on generoso

PR test command 'EB_PR=11489 EB_ARGS="--include-easyblocks-from-pr 2205" /apps/slurm/default/bin/sbatch --job-name test_PR_11489 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 8172

Test results coming soon (I hope)...

- notification for comment with ID 712280180 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2020-10-19T17:00:59Z

Test report by @boegelbot
Using easyblocks from easybuilders/easybuild-easyblocks#2205
SUCCESS
Build succeeded for 6 out of 6 (6 easyconfigs in total)
generoso-x-2 - Linux centos linux 8.2.2004, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/2f8c925d6e08d4f76e9be175df51dbf8 for a full test report.

boegel · 2020-10-19T17:05:19Z

Test report by @boegel
Using easyblocks from easybuilders/easybuild-easyblocks#2205
SUCCESS
Build succeeded for 6 out of 6 (6 easyconfigs in total)
node3408.kirlia.os - Linux centos linux 7.8.2003, x86_64, Intel(R) Xeon(R) Gold 6240 CPU @ 2.60GHz (cascadelake), Python 2.7.5
See https://gist.github.com/0be2d3306f7784edc220aba20083e9fa for a full test report.

boegel · 2020-10-19T17:29:53Z

Test report by @boegel
Using easyblocks from easybuilders/easybuild-easyblocks#2205
SUCCESS
Build succeeded for 6 out of 6 (6 easyconfigs in total)
node2427.golett.os - Linux centos linux 7.8.2003, x86_64, Intel(R) Xeon(R) CPU E5-2680 v3 @ 2.50GHz (haswell), Python 2.7.5
See https://gist.github.com/8d9d5a2805481bd765d78c601b6a8529 for a full test report.

zao · 2020-10-19T22:55:31Z

Test report by @zao
Using easyblocks from easybuilders/easybuild-easyblocks#2205
SUCCESS
Build succeeded for 6 out of 6 (6 easyconfigs in total)
freja - Linux Ubuntu 20.04, x86_64, Intel(R) Core(TM) i7-8700K CPU @ 3.70GHz (skylake), Python 3.8.5
See https://gist.github.com/12dd7c982ec5e3dc487cd3f62ef1a98e for a full test report.

verdurin · 2020-10-20T22:13:45Z

Test report by @verdurin
SUCCESS
Build succeeded for 27 out of 27 (6 easyconfigs in this PR)
nuc.lan - Linux Fedora 32, x86_64, Intel(R) Core(TM) i7-8650U CPU @ 1.90GHz, Python 3.8.6
See https://gist.github.com/dadb1eaab13f1ac62badb0fc168ee0a2 for a full test report.

zao · 2020-10-21T08:52:42Z

Test report by @zao
FAILED
Build succeeded for 29 out of 32 (6 easyconfigs in this PR)
b-cn1203.hpc2n.umu.se - Linux ubuntu 16.04, x86_64, Intel(R) Xeon Phi(TM) CPU 7250 @ 1.40GHz, Python 2.7.12
See https://gist.github.com/9143cfcd091f8a341f652a8c160b3ba2 for a full test report.

zao · 2020-10-21T11:44:29Z

Test report by @zao
SUCCESS
Build succeeded for 3 out of 3 (6 easyconfigs in this PR)
b-cn1203.hpc2n.umu.se - Linux ubuntu 16.04, x86_64, Intel(R) Xeon Phi(TM) CPU 7250 @ 1.40GHz, Python 2.7.12
See https://gist.github.com/c87765f7b28154e510b92bf0329865b8 for a full test report.

zao · 2020-10-21T11:55:05Z

KNL test report made in two parts due to easybuilders/easybuild-framework#3476, please consider my two test reports as a cumulative success.

branfosj · 2020-10-21T18:40:49Z

Test report by @branfosj
FAILED
Build succeeded for 0 out of 1 (1 easyconfigs in total)
bear-pg0206u16a.bear.cluster - Linux centos linux 8.2.2004, x86_64, Intel(R) Xeon(R) Gold 6248 CPU @ 2.50GHz (cascadelake), Python 3.6.8
See https://gist.github.com/0b61d22791f7b81dba570cdee7009936 for a full test report.

Error is

cmake: /rds/bear-apps/devel/eb-sjb-up/EL8/EL8-cas/software/XZ/5.2.5-GCCcore-10.2.0/lib/liblzma.so.5: version `XZ_5.2' not found (required by /rds/bear-apps/devel/eb-sjb-up/EL8/EL8-cas/software/libarchive/3.4.3-GCCcore-10.2.0/lib/libarchive.so.13)

branfosj · 2020-10-22T08:30:04Z

Test report by @branfosj
SUCCESS
Build succeeded for 6 out of 6 (6 easyconfigs in total)
bear-pg0306u19a.bear.cluster - Linux RHEL 8.2, POWER, 8335-GTX (power9le), Python 3.6.8
See https://gist.github.com/21c13f827a274d8cdba194231ec98ede for a full test report.

branfosj · 2020-10-22T08:39:47Z

Test report by @branfosj
SUCCESS
Build succeeded for 6 out of 6 (6 easyconfigs in total)
bear-pg0206u16a.bear.cluster - Linux centos linux 8.2.2004, x86_64, Intel(R) Xeon(R) Gold 6248 CPU @ 2.50GHz (cascadelake), Python 3.6.8
See https://gist.github.com/fc5a15837feef5b1289c3fa2dfdf731d for a full test report.

migueldiascosta · 2020-10-25T03:48:23Z

Test report by @migueldiascosta
Using easyblocks from PR(s) easybuilders/easybuild-easyblocks#2191, easybuilders/easybuild-easyblocks#2205
SUCCESS
Build succeeded for 6 out of 6 (6 easyconfigs in total)
sms - Linux centos linux 7.6.1810, x86_64, AMD EPYC 7601 32-Core Processor (zen), Python 2.7.5
See https://gist.github.com/4ea1c3e307c8d8abda9f990d939f2bd5 for a full test report.

bartoldeman · 2020-10-25T14:49:34Z

Test report by @bartoldeman
SUCCESS
Build succeeded for 6 out of 6 (6 easyconfigs in this PR)
build-node.computecanada.ca - Linux centos linux 7.8.2003, x86_64, Intel Xeon Processor (Skylake, IBRS), Python 3.7.7
See https://gist.github.com/56b9efa0e5967c7468ab06a59d6266f5 for a full test report.

verdurin · 2020-11-02T15:08:21Z

@boegel what are we waiting for on this one?

Micket · 2020-11-05T13:39:25Z

Test report by @Micket
SUCCESS
Build succeeded for 10 out of 10 (6 easyconfigs in total)
vera-c1 - Linux centos linux 7.8.2003, x86_64, Intel Xeon Processor (Skylake), Python 2.7.5
See https://gist.github.com/cfecf95db4e7efe5ab99b594761d0caf for a full test report.

boegel · 2020-11-06T21:41:26Z

@boegel what are we waiting for on this one?

Testing stuff on top. I was doing that with OpenFOAM 8 today, works fine.

Also tried CP2K 7.1, ran into problems with Libint:

python c_to_f.py ../include/libint2.h.i libint2_types_f.h Libint_t
grep '^#' ../include/libint2_types.h | grep -v '#include' > fortran_incldefs.h
FC libint_f.o
../include/libint2/util/generated/libint2_params.h:29:0:
   29 | #    if __has_include(<libint2_params.h>)
      |                                                                                                                                                                                                     Error: missing '(' before "__has_include" operand                                                                                                                                                           ../include/libint2/util/generated/libint2_params.h:29:0: Error: operator "__has_include" requires a header-name
make[1]: *** [../MakeSuffixRules:12: libint_f.o] Error 1

That doesn't need to be a blocker though, but it would be nice to have some confirmation about the Fortran aspect of foss/2020b too, so maybe via WRF?

boegel · 2020-11-08T09:33:31Z

Libint issue is fixed with patch for GCC 10.2, see #11627

CP2K 7.1 with foss/2020b requires using -fallow-argument-mismatch, see fix in CP2K easyblock @ easybuilders/easybuild-easyblocks#2223

Similarly building WRF 3.9.1.1 requires both -fallow-argument-mismatch and -fallow-invalid-boz, see wrf-model/WRF#1250, which is easy to fix with a patch.

verdurin · 2020-11-08T11:07:11Z

Test report by @verdurin
SUCCESS
Build succeeded for 1 out of 1 (6 easyconfigs in total)
nuc.lan - Linux Fedora 32, x86_64, Intel(R) Core(TM) i7-8650U CPU @ 1.90GHz, Python 3.8.6
See https://gist.github.com/cc7bacd81289b781449e01160131cbb4 for a full test report.

boegel · 2020-11-08T14:24:34Z

Test report by @boegel
SUCCESS
Build succeeded for 6 out of 6 (6 easyconfigs in total)
node3108.skitty.os - Linux centos linux 7.8.2003, x86_64, Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, Python 3.6.8
See https://gist.github.com/876ebf76c9c69039c64ce042fceffec0 for a full test report.

Micket · 2020-11-08T20:18:44Z

Test report by @Micket
SUCCESS
Build succeeded for 6 out of 6 (6 easyconfigs in total)
vera-c1 - Linux centos linux 7.8.2003, x86_64, Intel Xeon Processor (Skylake), Python 2.7.5
See https://gist.github.com/61aac51f05062cae63521389a0ecc34d for a full test report.

Micket

lgtm

Micket · 2020-11-08T21:42:20Z

Going in, thanks @boegel!

boegel · 2020-11-09T14:52:25Z

Test report by @boegel
SUCCESS
Build succeeded for 6 out of 6 (6 easyconfigs in total)
easybuild1.novalocal - Linux centos linux 8.2.2004, POWER, IBM pSeries (emulated by qemu) (power8le), Python 3.6.8
See https://gist.github.com/c61f1c99b83a04b7c207ac90820eb223 for a full test report.

boegel added the update label Oct 13, 2020

boegel added this to the next release (4.3.1) milestone Oct 13, 2020

boegel added this to In progress in EasyBuild v4.3.1 via automation Oct 13, 2020

Micket added the 2020b issues & PRs related to 2020b label Oct 13, 2020

boegel force-pushed the 20201013215757_new_pr_HPL23 branch from 8318aee to c63fa59 Compare October 13, 2020 20:23

easybuilders deleted a comment from boegelbot Oct 13, 2020

{toolchain} foss/2020b (WIP)

ae8562d

boegel force-pushed the 20201013215757_new_pr_HPL23 branch from c63fa59 to ae8562d Compare October 13, 2020 20:44

boegel added 2 commits October 18, 2020 14:33

update to OpenBLAS 0.3.11 as foss/2020b component

3194041

Merge branch 'develop' into 20201013215757_new_pr_HPL23

e5d45a0

boegel mentioned this pull request Oct 19, 2020

update ScaLAPACK easyblock to support installation with CMake for recent versions (>= v2.1.0) easybuilders/easybuild-easyblocks#2205

Merged

boegel added 2 commits October 19, 2020 12:13

add CMake build dep for ScaLAPACK 2.1.0 built with gompi/2020b

504c5ea

add patch for OpenBLAS 0.3.11 to fix test failure on Skylake X

eb8764d

add patch for OpenBLAS v0.3.11 to fix failing tests on KNL

f022e6f

easybuilders deleted a comment from boegelbot Oct 20, 2020

zao mentioned this pull request Oct 21, 2020

include-easyblocks-from-pr only supports a single PR for additional easyblocks easybuilders/easybuild-framework#3476

Closed

branfosj mentioned this pull request Oct 21, 2020

add XZ build dependency for libarchive 3.4.3 #11556

Merged

update OpenBLAS component for foss/2020a to version 0.3.12

7d25177

migueldiascosta mentioned this pull request Oct 25, 2020

take into account multiple easyblock PRs when uploading test reports easybuilders/easybuild-framework#3481

Merged

boegel modified the milestones: 4.3.1 (next release), 4.3.2 Oct 26, 2020

boegel removed this from In progress in EasyBuild v4.3.1 Oct 28, 2020

boegel added this to In progress in EasyBuild v4.3.2 via automation Oct 28, 2020

boegel mentioned this pull request Nov 8, 2020

{lang}[foss/2020b,intel/2020b] SciPy-bundle v2020.11 w/ Python 3.8.6 #11629

Merged

boegel changed the title ~~{toolchain} foss/2020b (WIP)~~ {toolchain} foss/2020b Nov 8, 2020

Micket approved these changes Nov 8, 2020

View reviewed changes

EasyBuild v4.3.2 automation moved this from In progress to Reviewer approved Nov 8, 2020

Micket merged commit f3fbdbe into easybuilders:develop Nov 8, 2020

EasyBuild v4.3.2 automation moved this from Reviewer approved to Done Nov 8, 2020

boegel deleted the 20201013215757_new_pr_HPL23 branch November 9, 2020 07:54

boegel mentioned this pull request Nov 11, 2020

{system}[system/system] CUDA v11.1.1, CUDAcore v11.1.1, gcccuda v2020b #11612

Merged

boegel mentioned this pull request Dec 8, 2020

Use OpenBLAS 0.3.11 in 2020b toolchain #11420

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{toolchain} foss/2020b #11489

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{toolchain} foss/2020b #11489

{toolchain} foss/2020b #11489

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