OpenFOAM with extranal cgal, metis, and paraview, with deps using intel2...

easybuild/easyconfigs/c/CGAL/CGAL-4.5-intel-2014b-Python-2.7.8.eb

@@ -0,0 +1,32 @@
+name = 'CGAL'
+version = '4.5'
+
+homepage = 'http://www.cgal.org/'
+description = """The goal of the CGAL Open Source Project is to provide easy access to efficient 
+ and reliable geometric algorithms in the form of a C++ library."""
+
+
+toolchain = {'name': 'intel', 'version': '2014b'}
+toolchainopts = {'strict': True}
+
+sources = [SOURCE_TAR_BZ2]
+source_urls = ['https://gforge.inria.fr/frs/download.php/file/34150/']
+# The directory changes with the version (and maybe in time) ---^
+# Have to accept license agreement
+
+pythonversion = '2.7.8'
+versionsuffix = "-Python-%s" % pythonversion
+
+dependencies = [
+    ('GMP', '5.1.3'),
+    ('Boost', '1.55.0', versionsuffix),
+    ('MPFR', '3.1.2'),
+    ('Qt', '4.8.6'),
+]
+
+builddeps = [
+    ('CMake', '3.0.0'),
+]
+
+moduleclass = 'numlib'
+

easybuild/easyconfigs/g/GMP/GMP-5.1.3-intel-2014b.eb

@@ -0,0 +1,25 @@
+easyblock = 'ConfigureMake'
+
+name = 'GMP'
+version = '5.1.3'
+
+homepage = 'http://gmplib.org/'
+description = """GMP is a free library for arbitrary precision arithmetic, 
+operating on signed integers, rational numbers, and floating point numbers. """
+
+toolchain = {'name': 'intel', 'version': '2014b'}
+
+sources = [SOURCELOWER_TAR_BZ2]
+source_urls = ['http://ftp.gnu.org/gnu/gmp']
+
+# enable C++ interface
+configopts = '--enable-cxx'
+
+runtest = 'check'
+
+sanity_check_paths = {
+    'files': ['lib/libgmp.%s' % SHLIB_EXT, 'include/gmp.h'],
+    'dirs': [],
+}
+
+moduleclass = 'math'

easybuild/easyconfigs/m/METIS/METIS-5.1.0-intel-2014b-32bitIDX.eb

@@ -0,0 +1,23 @@
+name = 'METIS'
+version = '5.1.0'
+versionsuffix = '-32bitIDX'
+
+homepage = 'http://glaros.dtc.umn.edu/gkhome/metis/metis/overview'
+description = """METIS is a set of serial programs for partitioning graphs, partitioning finite element meshes,
+and producing fill reducing orderings for sparse matrices. The algorithms implemented in METIS are based on the
+multilevel recursive-bisection, multilevel k-way, and multi-constraint partitioning schemes."""
+
+toolchain = {'name': 'intel', 'version': '2014b'}
+toolchainopts = {'optarch': True, 'pic': True}
+
+sources = [SOURCELOWER_TAR_GZ]
+source_urls = [
+    'http://glaros.dtc.umn.edu/gkhome/fetch/sw/metis',
+    'http://glaros.dtc.umn.edu/gkhome/fetch/sw/metis/OLD',
+]
+
+builddependencies = [('CMake', '3.0.0')]
+
+configopts = [' ', 'shared=1 ']
+
+moduleclass = 'math'

easybuild/easyconfigs/m/MPFR/MPFR-3.1.2-intel-2014b.eb

@@ -0,0 +1,26 @@
+easyblock = 'ConfigureMake'
+
+name = 'MPFR'
+version = '3.1.2'
+
+homepage = 'http://www.mpfr.org'
+description = """The MPFR library is a C library for multiple-precision 
+ floating-point computations with correct rounding."""
+
+toolchain = {'name': 'intel', 'version': '2014b'}
+
+source_urls = ['http://www.mpfr.org/mpfr-%s/' % version]
+sources = [SOURCELOWER_TAR_BZ2]
+
+patches = ['MPFR_ictce_remove-deprecated-mp.patch']
+
+dependencies = [('GMP', '5.1.3')]
+
+runtest = 'check'
+
+sanity_check_paths = {
+    'files': ['lib/libmpfr.%s' % SHLIB_EXT, 'include/mpfr.h'],
+    'dirs': []
+}
+
+moduleclass = 'math'

easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.3.0-intel-2014b.eb

@@ -0,0 +1,46 @@
+name = 'OpenFOAM'
+version = '2.3.0'
+
+homepage = 'http://www.openfoam.com/'
+description = """OpenFOAM is a free, open source CFD software package. 
+ OpenFOAM has an extensive range of features to solve anything from complex fluid flows
+ involving chemical reactions, turbulence and heat transfer, 
+ to solid dynamics and electromagnetics."""
+
+toolchain = {'name': 'intel', 'version': '2014b'}
+
+source_urls = ['http://downloads.sourceforge.net/foam/%(version)s']
+sources = [
+    SOURCE_TGZ,
+    'ThirdParty-%(version)s.tgz',
+]
+
+paraversion = '4.2.0'
+
+patches = [
+    'OpenFOAM-%(version)s_bugfix1.patch',
+    'cleanup-OpenFOAM-%(version)s.patch',
+    'OpenFOAM-%(version)s_libreadline.patch',
+    ('cleanup-ThirdParty-%(version)s.patch', ".."),  # patch should not be applied in OpenFOAM subdir
+    'external-3rd-OpenFOAM-%(version)s.patch',
+    ('external-3rd-ThirdParty-%(version)s.patch', ".."),
+    'external_paraview_%s.patch' % paraversion,
+]
+
+dependencies = [
+    ('CGAL', '4.5', '-Python-2.7.8'),
+    ('libreadline', '6.3'),
+    ('METIS', '5.1.0', '-32bitIDX'),
+    ('ncurses', '5.9'),
+    ('Paraview', paraversion),
+    ('SCOTCH', '6.0.0_esmumps'),
+]
+
+builddependencies = [
+    ('Bison', '3.0.2'),
+    ('CMake', '3.0.0'),
+    ('flex', '2.5.39'),
+]
+
+moduleclass = 'cae'
+

easybuild/easyconfigs/o/OpenFOAM/external-3rd-OpenFOAM-2.3.0.patch

@@ -0,0 +1,144 @@
+#Use external CGAL and METIS (via CGAL_ROOT, BOOST_ROOT and METIS_ROOT in easyconfig)
+#B. Hajgato OCT 23,2014
+--- OpenFOAM-2.3.0.ORIG/etc/config/CGAL.csh	2014-02-11 12:59:42.000000000 +0100
++++ OpenFOAM-2.3.0/etc/config/CGAL.csh	2014-10-23 07:33:17.186624521 +0200
+@@ -29,26 +29,36 @@
+ #     Sourced from OpenFOAM-<VERSION>/etc/cshrc
+ ##------------------------------------------------------------------------------
+
+-set boost_version=boost-system
+-set cgal_version=CGAL-4.3
++if ( ${?EBROOTCGAL} != 0 ) then
++   setenv BOOST_ARCH_PATH $EBROOTBOOST
++   setenv CGAL_ARCH_PATH $EBROOTCGAL
++
++elif ( ${?CGAL_ROOT} != 0 ) then
++   setenv BOOST_ARCH_PATH $CGAL_ROOT
++   setenv CGAL_ARCH_PATH $CGAL_ROOT
++
++else
++    set boost_version=boost-system
++    set cgal_version=CGAL-4.3
++
++    setenv BOOST_ARCH_PATH $WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER/$boost_version
++    setenv CGAL_ARCH_PATH $WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER/$cgal_version
++
++    if ($?FOAM_VERBOSE && $?prompt) then
++        echo "Using CGAL and boost"
++        echo "    $cgal_version at $CGAL_ARCH_PATH"
++        echo "    $boost_version at $BOOST_ARCH_PATH"
++    endif
++
++    if ( -d "$CGAL_ARCH_PATH" ) then
++        _foamAddLib $CGAL_ARCH_PATH/lib
++    endif
++
++    if ( -d "$BOOST_ARCH_PATH" ) then
++        _foamAddLib $BOOST_ARCH_PATH/lib
++    endif
+
+-setenv BOOST_ARCH_PATH $WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER/$boost_version
+-setenv CGAL_ARCH_PATH $WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER/$cgal_version
+-
+-if ($?FOAM_VERBOSE && $?prompt) then
+-    echo "Using CGAL and boost"
+-    echo "    $cgal_version at $CGAL_ARCH_PATH"
+-    echo "    $boost_version at $BOOST_ARCH_PATH"
+-endif
+-
+-if ( -d "$CGAL_ARCH_PATH" ) then
+-    _foamAddLib $CGAL_ARCH_PATH/lib
++    unset boost_version cgal_version
+ endif
+
+-if ( -d "$BOOST_ARCH_PATH" ) then
+-    _foamAddLib $BOOST_ARCH_PATH/lib
+-endif
+-
+-unset boost_version cgal_version
+-
+ # -----------------------------------------------------------------------------
+--- OpenFOAM-2.3.0.ORIG/etc/config/CGAL.sh	2014-02-11 12:59:42.000000000 +0100
++++ OpenFOAM-2.3.0/etc/config/CGAL.sh	2014-10-23 07:33:00.706674383 +0200
+@@ -29,29 +29,39 @@
+ #     Sourced from OpenFOAM-<VERSION>/etc/bashrc
+ #------------------------------------------------------------------------------
+
+-boost_version=boost-system
+-cgal_version=CGAL-4.3
++if [ -n "${EBROOTCGAL}" ]; then
++    export CGAL_ARCH_PATH="${EBROOTCGAL}"
++    export BOOST_ARCH_PATH="${EBROOTBOOST}"
++
++elif [ -n "${CGAL_ROOT}" ]; then
++    export CGAL_ARCH_PATH="${CGAL_ROOT}"
++    export BOOST_ARCH_PATH="${CGAL_ROOT}"
++
++else
++    boost_version=boost-system
++    cgal_version=CGAL-4.3
++
++    export BOOST_ARCH_PATH=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER/$boost_version
++    export CGAL_ARCH_PATH=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER/$cgal_version
++
++    if [ "$FOAM_VERBOSE" -a "$PS1" ]
++    then
++        echo "Using CGAL and boost"
++        echo "    $cgal_version at $CGAL_ARCH_PATH"
++        echo "    $boost_version at $BOOST_ARCH_PATH"
++    fi
++
++    if [ -d "$CGAL_ARCH_PATH" ]
++    then
++        _foamAddLib $CGAL_ARCH_PATH/lib
++    fi
++
++    if [ -d "$BOOST_ARCH_PATH" ]
++    then
++        _foamAddLib $BOOST_ARCH_PATH/lib
++    fi
+
+-export BOOST_ARCH_PATH=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER/$boost_version
+-export CGAL_ARCH_PATH=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER/$cgal_version
+-
+-if [ "$FOAM_VERBOSE" -a "$PS1" ]
+-then
+-    echo "Using CGAL and boost"
+-    echo "    $cgal_version at $CGAL_ARCH_PATH"
+-    echo "    $boost_version at $BOOST_ARCH_PATH"
+-fi
+-
+-if [ -d "$CGAL_ARCH_PATH" ]
+-then
+-    _foamAddLib $CGAL_ARCH_PATH/lib
++    unset boost_version cgal_version
+ fi
+
+-if [ -d "$BOOST_ARCH_PATH" ]
+-then
+-    _foamAddLib $BOOST_ARCH_PATH/lib
+-fi
+-
+-unset boost_version cgal_version
+-
+ # -----------------------------------------------------------------------------
+--- OpenFOAM-2.3.0.ORIG/etc/config/metis.sh	2014-02-11 12:59:42.000000000 +0100
++++ OpenFOAM-2.3.0/etc/config/metis.sh	2014-10-23 07:55:07.920637398 +0200
+@@ -33,7 +33,15 @@
+ #     during the wmake process
+ #------------------------------------------------------------------------------
+
+-export METIS_VERSION=metis-5.1.0
+-export METIS_ARCH_PATH=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER/$METIS_VERSION
++if [ -n "${EBROOTMETIS}" ] ; then
++    export METIS_ARCH_PATH=$EBROOTMETIS
++
++elif [ -n "${METIS_ROOT}" ] ; then
++    export METIS_ARCH_PATH=$METIS_ROOT
++
++else
++    export METIS_VERSION=metis-5.1.0
++    export METIS_ARCH_PATH=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER/$METIS_VERSION
++fi
+
+ # -----------------------------------------------------------------------------

easybuild/easyconfigs/o/OpenFOAM/external-3rd-ThirdParty-2.3.0.patch

@@ -0,0 +1,66 @@
+#Use external CGAL and METIS (via CGAL_ROOT, and METIS_ROOT in easyconfig)
+#B. Hajgato OCT 23,2014
+--- ThirdParty-2.3.0.ORIG/Allwmake	2014-10-22 16:52:34.833435329 +0200
++++ ThirdParty-2.3.0/Allwmake	2014-10-23 08:12:41.745387953 +0200
+@@ -324,32 +324,44 @@
+ echo ========================================
+ echo Build Metis decomposition
+
+-# get METIS_VERSION, METIS_ARCH_PATH
+-if settings=`$WM_PROJECT_DIR/bin/foamEtcFile config/metis.sh`
++if [ -n "$METIS_ROOT" ]
+ then
+-    . $settings
++    METIS_ARCH_PATH=$METIS_ROOT
+ fi
+-if [ -d "$METIS_VERSION" ]
+-then
+
+-    if [ -f $METIS_ARCH_PATH/include/metis.h \
+-      -a -r $FOAM_EXT_LIBBIN/libmetis.so ]
+-    then
++if [ -f $METIS_ARCH_PATH/include/metis.h \
++    -a -r $METIS_ARCH_PATH/lib/libmetis.so ]
++then
+         echo "    metis header in $METIS_ARCH_PATH/include"
+-        echo "    metis libs   in $FOAM_EXT_LIBBIN"
++        echo "    metis libs   in $METIS_ARCH_PATH/lib"
+         echo
++else
++    # get METIS_VERSION, METIS_ARCH_PATH
++    if settings=`$WM_PROJECT_DIR/bin/foamEtcFile config/metis.sh`
++    then
++        . $settings
++    fi
++    if [ -d "$METIS_VERSION" ]
++    then
++
++        if [ -f $METIS_ARCH_PATH/include/metis.h \
++          -a -r $FOAM_EXT_LIBBIN/libmetis.so ]
++        then
++            echo "    metis header in $METIS_ARCH_PATH/include"
++            echo "    metis libs   in $FOAM_EXT_LIBBIN"
++            echo
++        else
++            set -x
++            cd $METIS_VERSION  || exit 1
++            make config shared=1 prefix=$METIS_ARCH_PATH
++            make -j $WM_NCOMPPROCS install
++            cp $METIS_ARCH_PATH/lib/libmetis.so $FOAM_EXT_LIBBIN
++        fi
+     else
+-        set -x
+-        cd $METIS_VERSION  || exit 1
+-        make config shared=1 prefix=$METIS_ARCH_PATH
+-        make -j $WM_NCOMPPROCS install
+-        cp $METIS_ARCH_PATH/lib/libmetis.so $FOAM_EXT_LIBBIN
++        echo "    optional component Metis was not found"
+     fi
+-else
+-    echo "    optional component Metis was not found"
+ fi
+
+-
+ # CGAL is optional
+ echo ========================================
+ echo Build CGAL