{cae} [intel-2015a] GATE-7.0, Geant4-9.6.p04, root-5.34.26, clhep-2.1.3.1 (REVIEW)

easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-intel-2015a.eb

@@ -0,0 +1,25 @@
+easyblock = 'ConfigureMake'
+
+name = 'Autoconf'
+version = '2.69'
+
+homepage = 'http://www.gnu.org/software/autoconf/'
+description = """Autoconf is an extensible package of M4 macros that produce shell scripts to automatically
+ configure software source code packages. These scripts can adapt the packages to many kinds of UNIX-like
+ systems without manual user intervention. Autoconf creates a configuration script for a package from a
+ template file that lists the operating system features that the package can use, in the form of M4 macro calls."""
+
+toolchain = {'name': 'intel', 'version': '2015a'}
+
+source_urls = [GNU_SOURCE]
+sources = [SOURCELOWER_TAR_GZ]
+
+dependencies = [('M4', '1.4.17')]
+
+sanity_check_paths = {
+    'files': ["bin/%s" % x for x in ["autoconf", "autoheader", "autom4te", "autoreconf",
+                                     "autoscan", "autoupdate", "ifnames"]],
+    'dirs': [],
+}
+
+moduleclass = 'devel'

easybuild/easyconfigs/a/Automake/Automake-1.15-intel-2015a.eb

@@ -0,0 +1,33 @@
+##
+# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild
+#
+# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA
+# Authors::   Fotis Georgatos <fotis@cern.ch>
+# License::   MIT/GPL
+# $Id$
+#
+# This work implements a part of the HPCBIOS project and is a component of the policy:
+# http://hpcbios.readthedocs.org/en/latest/
+##
+
+easyblock = 'ConfigureMake'
+
+name = 'Automake'
+version = "1.15"
+
+homepage = 'http://www.gnu.org/software/automake/automake.html'
+description = "Automake: GNU Standards-compliant Makefile generator"
+
+toolchain = {'name': 'intel', 'version': '2015a'}
+
+source_urls = ['http://ftp.gnu.org/gnu/automake']
+sources = [SOURCELOWER_TAR_GZ]
+
+dependencies = [('Autoconf', '2.69')]
+
+sanity_check_paths = {
+    'files': ['bin/automake', 'bin/aclocal'],
+    'dirs': []
+}
+
+moduleclass = 'devel'

easybuild/easyconfigs/c/CFITSIO/CFITSIO-3.37-intel-2015a.eb

@@ -0,0 +1,22 @@
+easyblock = 'ConfigureMake'
+
+name = 'CFITSIO'
+version = '3.37'
+
+homepage = 'http://heasarc.gsfc.nasa.gov/fitsio/'
+description = """CFITSIO is a library of C and Fortran subroutines for reading and writing data files in
+FITS (Flexible Image Transport System) data format."""
+
+toolchain = {'name': 'intel', 'version': '2015a'}
+toolchainopts = {'optarch': True, 'pic': True}
+
+srcversion = '%s0' % version.replace('.', '')
+source_urls = ['ftp://heasarc.gsfc.nasa.gov/software/fitsio/c/']
+sources = ['%%(namelower)s%s.tar.gz' % srcversion]
+
+sanity_check_paths = {
+    'files': ["lib/libcfitsio.a"],
+    'dirs': ["include"],
+}
+
+moduleclass = 'lib'

easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.3.1-intel-2015a.eb

@@ -0,0 +1,30 @@
+easyblock = 'CMakeMake'
+
+name = 'CLHEP'
+version = '2.1.3.1'
+
+homepage = 'http://proj-clhep.web.cern.ch/proj-clhep/'
+description = """The CLHEP project is intended to be a set of HEP-specific foundation and
+ utility classes such as random generators, physics vectors, geometry and linear algebra.
+ CLHEP is structured in a set of packages independent of any external package."""
+
+
+toolchain = {'name': 'intel', 'version': '2015a'}
+toolchainopts = {'pic': True}
+
+sources = [SOURCELOWER_TGZ]
+source_urls = ['http://proj-clhep.web.cern.ch/proj-clhep/DISTRIBUTION/tarFiles/']
+
+dependencies = [ ('CMake', '3.1.3') ]
+
+# build dir should not be in the source tree!
+preconfigopts = 'mkdir ../../2.1.3.1_bld && cd ../../2.1.3.1_bld &&'
+prebuildopts = 'cd ../../2.1.3.1_bld &&'
+preinstallopts = 'cd ../../2.1.3.1_bld &&'
+
+configopts = '-DCMAKE_BUILD_TYPE=Release' 
+
+# build dir should not be in the source tree!
+srcdir = '../2.1.3.1/CLHEP/'
+
+moduleclass = 'numlib'

easybuild/easyconfigs/c/CMake/CMake-3.1.3-intel-2015a.eb

@@ -0,0 +1,22 @@
+easyblock = 'ConfigureMake'
+
+name = 'CMake'
+version = '3.1.3'
+
+homepage = 'http://www.cmake.org'
+description = """CMake, the cross-platform, open-source build system.
+ CMake is a family of tools designed to build, test and package software."""
+
+toolchain = {'name': 'intel', 'version': '2015a'}
+
+source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s']
+sources = [SOURCELOWER_TAR_GZ]
+
+dependencies = [('ncurses', '5.9')]
+
+sanity_check_paths = {
+    'files': ["bin/%s" % x for x in ['cmake', 'cpack', 'ctest']],
+    'dirs': [],
+}
+
+moduleclass = 'devel'

easybuild/easyconfigs/e/expat/expat-2.1.0-intel-2015a.eb

@@ -0,0 +1,15 @@
+easyblock = 'ConfigureMake'
+
+name = 'expat'
+version = '2.1.0'
+
+homepage = 'http://expat.sourceforge.net/'
+description = """Expat is an XML parser library written in C. It is a stream-oriented parser in which an application
+ registers handlers for things the parser might find in the XML document (like start tags)"""
+
+toolchain = {'name': 'intel', 'version': '2015a'}
+
+sources = [SOURCELOWER_TAR_GZ]
+source_urls = [SOURCEFORGE_SOURCE]
+
+moduleclass = 'tools'

easybuild/easyconfigs/f/freetype/freetype-2.5.5-intel-2015a.eb

@@ -0,0 +1,21 @@
+name = 'freetype'
+version = '2.5.5'
+
+homepage = 'http://freetype.org'
+description = """FreeType 2 is a software font engine that is designed to be small, efficient, highly customizable, and
+ portable while capable of producing high-quality output (glyph images). It can be used in graphics libraries, display
+ servers, font conversion tools, text image generation tools, and many other products as well."""
+
+toolchain = {'name': 'intel', 'version': '2015a'}
+
+source_urls = [GNU_SAVANNAH_SOURCE]
+sources = [SOURCE_TAR_GZ]
+
+dependencies = [('libpng', '1.6.16')]
+
+sanity_check_paths = {
+    'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.so', 'lib/pkgconfig/freetype2.pc'],
+    'dirs': ['include/freetype2'],
+}
+
+moduleclass = 'vis'

easybuild/easyconfigs/g/GATE/GATE-7.0-intel-2015a.eb

@@ -0,0 +1,26 @@
+name = 'GATE'
+version = '7.0'
+
+homepage = 'http://www.opengatecollaboration.org/'
+description = """GATE is an advanced opensource software developed by the international OpenGATE collaboration and
+ dedicated to the numerical simulations in medical imaging. It currently supports simulations of Emission Tomography
+  (Positron Emission Tomography - PET and Single Photon Emission Computed Tomography - SPECT), and Computed Tomography"""
+
+toolchain = {'name': 'intel', 'version': '2015a'}
+
+sources = [('%(namelower)s_v%(version)s.tar_.gz' , "tar xfvz %s")]
+source_urls = ['http://www.opengatecollaboration.org/sites/opengatecollaboration.org/files/']
+
+patches = [
+    'GATE-%(version)s_Makefile-prefix.patch',
+    'GATE-%(version)s_unistdh.patch',
+]
+
+dependencies = [
+    ('Geant4', '9.6.p04'),
+    ('CLHEP', '2.1.3.1'),
+    ('ROOT', 'v5.34.26'),
+    ('CMake', '3.1.3'),
+]
+
+moduleclass = 'cae'

easybuild/easyconfigs/g/GATE/GATE-7.0_Makefile-prefix.patch

@@ -0,0 +1,46 @@
+--- gate_v7.0/cluster_tools/filemerger/Makefile.orig	2014-05-12 11:18:16.000000000 +0200
++++ gate_v7.0/cluster_tools/filemerger/Makefile	2015-03-04 10:54:55.461301152 +0100
+@@ -16,6 +16,8 @@
+ INCLUDE := -I./include `geant4-config --cflags` `root-config --cflags`
+ LDFLAGS := `geant4-config --libs` `root-config --glibs`
+
++PREFIX := /usr/local
++
+ TARGET := gjm
+
+ .PHONY: all clean directories cleanall install uninstall
+@@ -49,8 +51,9 @@
+
+ install:
+ 	@echo Installing ...
+-	@$(CP) $(TARGET) /usr/local/bin
++	mkdir -p $(PREFIX)/bin
++	@$(CP) $(TARGET) $(PREFIX)/bin
+
+ uninstall:
+ 	@echo Uninstalling...
+-	@$(RM) /usr/local/bin/$(TARGET)
++	@$(RM) $(PREFIX)/bin/$(TARGET)
+--- gate_v7.0/cluster_tools/jobsplitter/Makefile.orig	2014-05-12 11:18:16.000000000 +0200
++++ gate_v7.0/cluster_tools/jobsplitter/Makefile	2015-03-04 10:54:55.461301152 +0100
+@@ -16,6 +16,8 @@
+ INCLUDE := -I./include `geant4-config --cflags`
+ LDFLAGS := `geant4-config --libs`
+
++PREFIX := /usr/local
++
+ TARGET := gjs
+
+ .PHONY: all clean directories cleanall install uninstall
+@@ -57,8 +59,9 @@
+
+ install:
+ 	@echo Installing ...
+-	@$(CP) $(TARGET) /usr/local/bin
++	mkdir -p $(PREFIX)/bin
++	@$(CP) $(TARGET) $(PREFIX)/bin
+
+ uninstall:
+ 	@echo Uninstalling...
+-	@$(RM) /usr/local/bin/$(TARGET)
++	@$(RM) $(PREFIX)/bin/$(TARGET)

easybuild/easyconfigs/g/GATE/GATE-7.0_unistdh.patch

@@ -0,0 +1,10 @@
+--- gate_v7.0/cluster_tools/jobsplitter/include/GateMacfileParser.hh.org	2014-05-12 11:18:16.000000000 +0200
++++ gate_v7.0/cluster_tools/jobsplitter/include/GateMacfileParser.hh	2015-03-04 10:32:24.416298472 +0100
+@@ -19,6 +19,7 @@
+ #include <sstream> 
+ #include <fstream> 
+ #include <math.h>
++#include <unistd.h>
+
+ using namespace std;
+

easybuild/easyconfigs/g/Geant4/Geant4-9.6.p04-intel-2015a.eb

@@ -0,0 +1,24 @@
+name = 'Geant4'
+version = '9.6.p04'
+
+homepage = 'http://geant4.cern.ch/'
+description = """Geant4 is a toolkit for the simulation of the passage of particles through matter.
+ Its areas of application include high energy, nuclear and accelerator physics, 
+ as well as studies in medical and space science."""
+
+toolchain = {'name': 'intel', 'version': '2015a'}
+
+source_urls = ['http://geant4.cern.ch/support/source']
+sources = ['%(namelower)s.%(version)s.tar.gz']
+
+dependencies = [
+    ('expat', '2.1.0'),
+    ('CLHEP', '2.1.3.1'),
+]
+
+builddependencies = [('CMake', '3.1.3')]
+
+configopts = "-DEXPAT_LIBRARY=$EBROOTEXPAT/lib/libexpat.so -DEXPAT_INCLUDE_DIR=$EBROOTEXPAT/include"
+configopts += "-DGEANT4_INSTALL_DATA=OFF"
+
+moduleclass = 'phys'

easybuild/easyconfigs/g/glproto/glproto-1.4.17-intel-2015a.eb

@@ -0,0 +1,21 @@
+easyblock = 'ConfigureMake'
+
+name = 'glproto'
+version = '1.4.17'
+
+homepage = "http://www.freedesktop.org/wiki/Software/xlibs"
+description = "X protocol and ancillary headers"
+
+toolchain = {'name': 'intel', 'version': '2015a'}
+toolchainopts = {'optarch': True}
+
+sources = [SOURCE_TAR_GZ]
+source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/']
+
+sanity_check_paths = {
+    'files': ['include/GL/%s.h' % x for x in ['glxint', 'glxmd', 'glxproto',
+                                              'glxtokens', 'internal/glcore']],
+    'dirs': [],
+}
+
+moduleclass = 'devel'

easybuild/easyconfigs/l/libdrm/libdrm-2.4.59-intel-2015a.eb

@@ -0,0 +1,27 @@
+easyblock = 'ConfigureMake'
+
+name = 'libdrm'
+version = '2.4.59'
+
+homepage = 'http://dri.freedesktop.org'
+description = """Direct Rendering Manager runtime library."""
+
+source_urls  = ['http://dri.freedesktop.org/libdrm/']
+sources = [SOURCELOWER_TAR_GZ]
+
+toolchain = {'name': 'intel', 'version': '2015a'}
+
+dependencies = [
+    ('libpthread-stubs', '0.3'),
+    ('libpciaccess', '0.13.3'),
+]
+
+configopts = '--enable-nouveau-experimental-api'
+
+sanity_check_paths = {
+    'files' : ['include/xf86drm.h', 'include/xf86drmMode.h', 'lib/libdrm_intel.so',
+               'lib/libdrm_radeon.so', 'lib/libdrm_nouveau.so', 'lib/libdrm.so', 'lib/libkms.so'],
+    'dirs': ['include/libdrm', 'include/libkms', 'lib/pkgconfig'],
+}
+
+moduleclass = 'lib'

easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.3-intel-2015a.eb

@@ -0,0 +1,26 @@
+easyblock = 'ConfigureMake'
+
+name = 'libpciaccess'
+version = '0.13.3'
+
+homepage = 'http://cgit.freedesktop.org/xorg/lib/libpciaccess/'
+description = """Generic PCI access library."""
+
+source_urls = ['http://cgit.freedesktop.org/xorg/lib/libpciaccess/snapshot']
+sources = [SOURCE_TAR_GZ]
+
+toolchain = {'name': 'intel', 'version': '2015a'}
+
+builddependencies = [
+    ('Autoconf', '2.69'),
+    ('xorg-macros', '1.19.0'),
+]
+
+preconfigopts = "ACLOCAL='aclocal -I $EBROOTXORGMINMACROS/share/aclocal' ./autogen.sh && "
+
+sanity_check_paths = {
+    'files': ['include/pciaccess.h', 'lib/libpciaccess.a'],
+    'dirs': ['lib/pkgconfig'],
+}
+
+moduleclass = 'system'

easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-intel-2015a.eb

@@ -0,0 +1,20 @@
+easyblock = 'ConfigureMake'
+
+name = 'libpthread-stubs'
+version = '0.3'
+
+homepage = 'http://xcb.freedesktop.org/'
+description = """The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint,
+latency hiding, direct access to the protocol, improved threading support, and extensibility."""
+
+source_urls  = ['http://xcb.freedesktop.org/dist/']
+sources = [SOURCELOWER_TAR_GZ]
+
+toolchain = {'name': 'intel', 'version': '2015a'}
+
+sanity_check_paths = {
+    'files' : ['lib/pkgconfig/pthread-stubs.pc'],
+    'dirs': [] ,
+}
+
+moduleclass = 'lib'