{bio} [intel-2015a] HMMER 3.1b2 (REVIEW)

easybuild/easyconfigs/h/HMMER/HMMER-3.1b2-intel-2015a.eb

@@ -0,0 +1,43 @@
+##
+# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild
+#
+# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA
+# Authors::   Nils Christian <nils.christian@uni.lu>, Fotis Georgatos <fotis@cern.ch>
+# License::   MIT/GPL
+# $Id$
+#
+# This work implements a part of the HPCBIOS project and is a component of the policy:
+# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html
+##
+
+easyblock = 'ConfigureMake'
+
+name = 'HMMER'
+version = '3.1b2'
+
+homepage = 'http://hmmer.janelia.org/'
+description = """HMMER is used for searching sequence databases for homologs of protein sequences,
+ and for making protein sequence alignments. It implements methods using probabilistic models
+ called profile hidden Markov models (profile HMMs).  Compared to BLAST, FASTA, and other
+ sequence alignment and database search tools based on older scoring methodology,
+ HMMER aims to be significantly more accurate and more able to detect remote homologs
+ because of the strength of its underlying mathematical models. In the past, this strength
+ came at significant computational expense, but in the new HMMER3 project, HMMER is now
+ essentially as fast as BLAST."""
+
+toolchain = {'name': 'intel', 'version': '2015a'}
+
+sources = ['hmmer-%(version)s-linux-intel-x86_64.tar.gz']
+source_urls = ['http://selab.janelia.org/software/hmmer%(version_major)s/%(version)s/']
+
+installopts = ' && cd easel && make install'
+
+sanity_check_paths = {
+    'files': ["bin/%s" % x for x in ["hmmemit", "hmmsearch", "hmmscan",
+                                    "esl-alimap", "esl-cluster", "esl-mask"]],
+    'dirs': []
+}
+
+runtest = 'check'
+
+moduleclass = 'bio'