{bio}[foss/2020b] PartitionFinder v2.1.1 + fix source URL for PyTables v3.5.2

easybuild/easyconfigs/p/PartitionFinder/PartitionFinder-2.1.1-foss-2020b-Python-2.7.18.eb

@@ -0,0 +1,48 @@
+# Author: Pavel Grochal (INUITS)
+# License: GPLv2
+
+easyblock = 'Tarball'
+
+name = 'PartitionFinder'
+version = '2.1.1'
+versionsuffix = '-Python-%(pyver)s'
+
+homepage = 'https://www.robertlanfear.com/partitionfinder'
+description = """PartitionFinder 2 is a Python program for simultaneously
+choosing partitioning schemes and models of molecular evolution for phylogenetic
+analyses of DNA, protein, and morphological data. You can PartitionFinder 2
+before running a phylogenetic analysis, in order to decide how to divide up
+your sequence data into separate blocks before analysis, and to simultaneously
+perform model selection on each of those blocks."""
+
+toolchain = {'name': 'foss', 'version': '2020b'}
+
+github_account = 'brettc'
+source_urls = [GITHUB_SOURCE]
+sources = ['v%(version)s.tar.gz']
+checksums = ['ccf3718996ee6ca496909b4b97d2b075028e0543eba3bc47a8c14b689c84e061']
+
+dependencies = [
+    ('Python', '2.7.18'),
+    ('SciPy-bundle', '2020.11', versionsuffix),
+    ('scikit-learn', '0.20.4', versionsuffix),
+    ('PyTables', '3.5.2', versionsuffix),
+]
+
+postinstallcmds = ["cd %(installdir)s && chmod a+x PartitionFinder*"]
+fix_python_shebang_for = ["*.py"]
+
+sanity_check_paths = {
+    'files': ['%(name)sMorphology.py', '%(name)sProtein.py', '%(name)s.py'],
+    'dirs': ['partfinder'],
+}
+
+sanity_check_commands = [
+    '%(name)s.py -p %(parallel)s %(installdir)s/examples/nucleotide/test.phy',
+    '%(name)sProtein.py -p %(parallel)s %(installdir)s/examples/aminoacid/test.phy',
+    '%(name)sMorphology.py -p %(parallel)s %(installdir)s/examples/morphology/test.phy --raxml',
+]
+
+modextrapaths = {'PATH': ''}
+
+moduleclass = 'bio'

easybuild/easyconfigs/p/PyTables/PyTables-3.5.2-foss-2020b-Python-2.7.18.eb

@@ -17,7 +17,7 @@ description = """PyTables is a package for managing hierarchical datasets and de
 toolchain = {'name': 'foss', 'version': '2020b'}
 toolchainopts = {'usempi': True}
 
-source_urls = ['https://github.com/PyTables/PyTables/archive/']
+source_urls = ['https://github.com/PyTables/PyTables/archive/refs/tags/']
 sources = ['v%(version)s.tar.gz']
 patches = ['%(name)s-%(version)s-fix-libs.patch']
 checksums = [