{bio}[foss/2022b] leafcutter v0.2.9 w/ R 4.2.2 + additional required extensions in R-bundle-Bioconductor v3.16

[laraPPr]

(created using eb --new-pr)

requires:

• {bio}[foss/2022b] RegTools v1.0.0 #18568

[boegel]

@boegelbot please test @ generoso
EB_ARGS="--skip"

[boegelbot]

@boegel: Request for testing this PR well received on login1

PR test command 'EB_PR=18615 EB_ARGS="--skip" EB_CONTAINER= /opt/software/slurm/bin/sbatch --job-name test_PR_18615 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

• exit code: 0
• output:

Submitted batch job 11527

Test results coming soon (I hope)...

- notification for comment with ID 1688212582 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

[boegelbot]

Test report by @boegelbot
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in total)
cns2 - Linux Rocky Linux 8.5, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/ed6ecb76ca41daa32aba0e4de594263c for a full test report.

[boegel]

@boegelbot please test @ jsc-zen2
EB_ARGS="--skip"

[boegelbot]

@boegel: Request for testing this PR well received on jsczen2l1.int.jsc-zen2.easybuild-test.cluster

PR test command 'EB_PR=18615 EB_ARGS="--skip" /opt/software/slurm/bin/sbatch --mem-per-cpu=4000M --job-name test_PR_18615 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen2.sh' executed!

• exit code: 0
• output:

Submitted batch job 3223

Test results coming soon (I hope)...

- notification for comment with ID 1688252530 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

[boegel]

Test report by @boegel
SUCCESS
Build succeeded for 3 out of 3 (2 easyconfigs in total)
node3104.skitty.os - Linux RHEL 8.6, x86_64, Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz (skylake_avx512), Python 3.6.8
See https://gist.github.com/boegel/374ea761be8ea68144e6b0dba5320e11 for a full test report.

[boegel]

@boegelbot please test @ jsc-zen2
EB_ARGS="--sanity-check-only"

[boegelbot]

@boegel: Request for testing this PR well received on jsczen2l1.int.jsc-zen2.easybuild-test.cluster

PR test command 'EB_PR=18615 EB_ARGS="--sanity-check-only" /opt/software/slurm/bin/sbatch --mem-per-cpu=4000M --job-name test_PR_18615 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen2.sh' executed!

• exit code: 0
• output:

Submitted batch job 3225

Test results coming soon (I hope)...

- notification for comment with ID 1688604091 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

[boegelbot]

Test report by @boegelbot
FAILED
Build succeeded for 1 out of 2 (2 easyconfigs in total)
jsczen2c1.int.jsc-zen2.easybuild-test.cluster - Linux Rocky Linux 8.5, x86_64, AMD EPYC 7742 64-Core Processor (zen2), Python 3.6.8
See https://gist.github.com/boegelbot/7b732d1bcc6a524c1a2393bb0c6b128e for a full test report.

[boegel]

--sanity-check-only failed with "/bin/bash: R: command not found" because of a bug in RPackage easyblock, which makes it incompatible with --sanity-check-only, similar to what we had for PythonPackage before easybuilders/easybuild-easyblocks#2828 was fixed...

edit: issue opened at easybuilders/easybuild-easyblocks#2986

[boegel]

@boegelbot please test @ jsc-zen2
EB_ARGS="--skip"

[boegelbot]

@boegel: Request for testing this PR well received on jsczen2l1.int.jsc-zen2.easybuild-test.cluster

PR test command 'EB_PR=18615 EB_ARGS="--skip" /opt/software/slurm/bin/sbatch --mem-per-cpu=4000M --job-name test_PR_18615 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen2.sh' executed!

• exit code: 0
• output:

Submitted batch job 3227

Test results coming soon (I hope)...

- notification for comment with ID 1690171359 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

[boegelbot]

Test report by @boegelbot
FAILED
Build succeeded for 1 out of 2 (2 easyconfigs in total)
jsczen2c1.int.jsc-zen2.easybuild-test.cluster - Linux Rocky Linux 8.5, x86_64, AMD EPYC 7742 64-Core Processor (zen2), Python 3.6.8
See https://gist.github.com/boegelbot/443f73fbb003173a5d5fe9fcc34bfc0a for a full test report.

[boegel]

@boegelbot please test @ jsc-zen2
EB_ARGS="leafcutter-0.2.9-foss-2022b-R-4.2.2.eb"

[boegelbot]

@boegel: Request for testing this PR well received on jsczen2l1.int.jsc-zen2.easybuild-test.cluster

PR test command 'EB_PR=18615 EB_ARGS="leafcutter-0.2.9-foss-2022b-R-4.2.2.eb" /opt/software/slurm/bin/sbatch --mem-per-cpu=4000M --job-name test_PR_18615 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen2.sh' executed!

• exit code: 0
• output:

Submitted batch job 3234

Test results coming soon (I hope)...

- notification for comment with ID 1691351735 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

[boegelbot]

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
jsczen2c1.int.jsc-zen2.easybuild-test.cluster - Linux Rocky Linux 8.5, x86_64, AMD EPYC 7742 64-Core Processor (zen2), Python 3.6.8
See https://gist.github.com/boegelbot/1db2aed2caecdcd50e0402c040e8d046 for a full test report.

[boegel]

Going in, thanks @laraPPr!