{vis}[foss/2022a] yt v4.3.0 #19754

sassy-crick · 2024-01-30T17:40:55Z

(created using eb --new-pr)

Requires:

PR {lang}[GCCcore/11.3.0] Cython v3.0.8 #19756

sassy-crick · 2024-01-30T17:49:43Z

I am having problems to get that compilation working and the error messages are, well, cryptic to me.
The full log can be found here
I would appreciate some help. thanks

boegelbot · 2024-01-30T18:25:46Z

@sassy-crick: Tests failed in GitHub Actions, see https://github.com/easybuilders/easybuild-easyconfigs/actions/runs/7715235604
Output from first failing test suite run:

FAIL: test_style_conformance (test.easyconfigs.styletests.StyleTest)
Check the easyconfigs for style
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/opt/hostedtoolcache/Python/3.6.15/x64/lib/python3.6/site-packages/easybuild/base/testing.py", line 97, in assertEqual
    super(TestCase, self).assertEqual(a, b)
  File "/opt/hostedtoolcache/Python/3.6.15/x64/lib/python3.6/unittest/case.py", line 829, in assertEqual
    assertion_func(first, second, msg=msg)
AssertionError: 1 != 0

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/home/runner/work/easybuild-easyconfigs/easybuild-easyconfigs/test/easyconfigs/styletests.py", line 68, in test_style_conformance
    self.assertEqual(result, 0, error_msg)
  File "/opt/hostedtoolcache/Python/3.6.15/x64/lib/python3.6/site-packages/easybuild/base/testing.py", line 119, in assertEqual
    raise AssertionError("%s:\nDIFF%s:\n%s" % (msg, limit, ''.join(diff[:self.ASSERT_MAX_DIFF])))
AssertionError: There shouldn't be any code style errors (and/or warnings), found 1:
/home/runner/work/easybuild-easyconfigs/easybuild-easyconfigs/easybuild/easyconfigs/y/yt/yt-4.3.0-foss-2022a.eb:18:15: E231 missing whitespace after ','

: 1 != 0:
DIFF:
- 1

----------------------------------------------------------------------
Ran 19051 tests in 730.650s

FAILED (failures=1)
ERROR: Not all tests were successful

bleep, bloop, I'm just a bot (boegelbot v20200716.01)
Please talk to my owner @boegel if you notice me acting stupid),
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boegelbot · 2024-01-30T22:25:45Z

@sassy-crick: Tests failed in GitHub Actions, see https://github.com/easybuilders/easybuild-easyconfigs/actions/runs/7717959698
Output from first failing test suite run:

ERROR: test_conflicts (test.easyconfigs.easyconfigs.EasyConfigTest)
Check whether any conflicts occur in software dependency graphs.
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/home/runner/work/easybuild-easyconfigs/easybuild-easyconfigs/test/easyconfigs/easyconfigs.py", line 330, in test_conflicts
    self.assertFalse(check_conflicts(self.ordered_specs, modules_tool(), check_inter_ec_conflicts=False),
  File "/home/runner/work/easybuild-easyconfigs/easybuild-easyconfigs/test/easyconfigs/easyconfigs.py", line 282, in ordered_specs
    EasyConfigTest.resolve_all_dependencies()
  File "/home/runner/work/easybuild-easyconfigs/easybuild-easyconfigs/test/easyconfigs/easyconfigs.py", line 214, in resolve_all_dependencies
    cls._parsed_easyconfigs, modules_tool(), retain_all_deps=True)
  File "/opt/hostedtoolcache/Python/3.6.15/x64/lib/python3.6/site-packages/easybuild/tools/robot.py", line 463, in resolve_dependencies
    raise_error_missing_deps(totally_missing, extra_msg="no easyconfig file or existing module found")
  File "/opt/hostedtoolcache/Python/3.6.15/x64/lib/python3.6/site-packages/easybuild/tools/robot.py", line 326, in raise_error_missing_deps
    raise EasyBuildError(error_msg)
easybuild.tools.build_log.EasyBuildError: 'Missing dependencies: Cython/3.0.8-foss-2022a (no easyconfig file or existing module found)'

======================================================================
ERROR: test_dep_graph (test.easyconfigs.easyconfigs.EasyConfigTest)
Unit test that builds a full dependency graph.
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/home/runner/work/easybuild-easyconfigs/easybuild-easyconfigs/test/easyconfigs/easyconfigs.py", line 317, in test_dep_graph
    dep_graph(fn, self.ordered_specs)
  File "/home/runner/work/easybuild-easyconfigs/easybuild-easyconfigs/test/easyconfigs/easyconfigs.py", line 282, in ordered_specs
    EasyConfigTest.resolve_all_dependencies()
  File "/home/runner/work/easybuild-easyconfigs/easybuild-easyconfigs/test/easyconfigs/easyconfigs.py", line 214, in resolve_all_dependencies
    cls._parsed_easyconfigs, modules_tool(), retain_all_deps=True)
  File "/opt/hostedtoolcache/Python/3.6.15/x64/lib/python3.6/site-packages/easybuild/tools/robot.py", line 463, in resolve_dependencies
    raise_error_missing_deps(totally_missing, extra_msg="no easyconfig file or existing module found")
  File "/opt/hostedtoolcache/Python/3.6.15/x64/lib/python3.6/site-packages/easybuild/tools/robot.py", line 326, in raise_error_missing_deps
    raise EasyBuildError(error_msg)
easybuild.tools.build_log.EasyBuildError: 'Missing dependencies: Cython/3.0.8-foss-2022a (no easyconfig file or existing module found)'

======================================================================
ERROR: test_dep_versions_per_toolchain_generation (test.easyconfigs.easyconfigs.EasyConfigTest)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/home/runner/work/easybuild-easyconfigs/easybuild-easyconfigs/test/easyconfigs/easyconfigs.py", line 919, in test_dep_versions_per_toolchain_generation
    for ec in self.ordered_specs:
  File "/home/runner/work/easybuild-easyconfigs/easybuild-easyconfigs/test/easyconfigs/easyconfigs.py", line 282, in ordered_specs
    EasyConfigTest.resolve_all_dependencies()
  File "/home/runner/work/easybuild-easyconfigs/easybuild-easyconfigs/test/easyconfigs/easyconfigs.py", line 214, in resolve_all_dependencies
    cls._parsed_easyconfigs, modules_tool(), retain_all_deps=True)
  File "/opt/hostedtoolcache/Python/3.6.15/x64/lib/python3.6/site-packages/easybuild/tools/robot.py", line 463, in resolve_dependencies
    raise_error_missing_deps(totally_missing, extra_msg="no easyconfig file or existing module found")
  File "/opt/hostedtoolcache/Python/3.6.15/x64/lib/python3.6/site-packages/easybuild/tools/robot.py", line 326, in raise_error_missing_deps
    raise EasyBuildError(error_msg)
easybuild.tools.build_log.EasyBuildError: 'Missing dependencies: Cython/3.0.8-foss-2022a (no easyconfig file or existing module found)'

----------------------------------------------------------------------
Ran 19054 tests in 926.853s

FAILED (errors=3)
ERROR: Not all tests were successful

bleep, bloop, I'm just a bot (boegelbot v20200716.01)
Please talk to my owner @boegel if you notice me acting stupid),
or submit a pull request to https://github.com/boegel/boegelbot fix the problem.

…asyconfigs into 20240130174051_new_pr_yt430

easybuild/easyconfigs/y/yt/yt-4.3.0-foss-2022a.eb

boegelbot · 2024-01-31T22:25:43Z

@sassy-crick: Tests failed in GitHub Actions, see https://github.com/easybuilders/easybuild-easyconfigs/actions/runs/7732497497
Output from first failing test suite run:

FAIL: test_dep_versions_per_toolchain_generation (test.easyconfigs.easyconfigs.EasyConfigTest)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/home/runner/work/easybuild-easyconfigs/easybuild-easyconfigs/test/easyconfigs/easyconfigs.py", line 945, in test_dep_versions_per_toolchain_generation
    self.fail('Should not have multiple variants of dependencies.\n' + multi_dep_vars_msg)
AssertionError: Should not have multiple variants of dependencies.
Found 2 variants of 'sympy' dependency in easyconfigs using '2022a' toolchain generation
* version: 1.10.1; versionsuffix:  as dep for {'RFdiffusion-1.1.0-foss-2022a-CUDA-11.7.0.eb', 'PyTorch-2.1.2-foss-2022a.eb', 'grid-20220610-intel-2022a.eb', 'pymatgen-2023.3.10-foss-2022a.eb', 'pyccel-1.7.0-foss-2022a.eb', 'M3GNet-0.2.4-foss-2022a.eb', 'PyTorch-2.0.1-foss-2022a.eb', 'RFdiffusion-1.1.0-foss-2022a.eb', 'e3nn-0.3.3-foss-2022a-CUDA-11.7.0.eb', 'GetOrganelle-1.7.7.0-foss-2022a.eb', 'DensPart-20220603-intel-2022a.eb', 'e3nn-0.3.3-foss-2022a.eb'}
  * version: 1.11.1; versionsuffix:  as dep for {'yt-4.3.0-foss-2022a.eb'}


----------------------------------------------------------------------
Ran 19065 tests in 741.846s

FAILED (failures=1)
ERROR: Not all tests were successful

bleep, bloop, I'm just a bot (boegelbot v20200716.01)
Please talk to my owner @boegel if you notice me acting stupid),
or submit a pull request to https://github.com/boegel/boegelbot fix the problem.

sassy-crick · 2024-02-02T14:17:16Z

@boegelbot please test @ generoso

boegelbot · 2024-02-02T14:20:06Z

@sassy-crick: Request for testing this PR well received on login1

PR test command 'EB_PR=19754 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_19754 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 12822

Test results coming soon (I hope)...

- notification for comment with ID 1923972807 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2024-02-02T14:28:35Z

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
cns2 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/734e071a8059505cb16b3d8ac1f15e5d for a full test report.

bedroge · 2024-02-02T15:04:52Z

@boegelbot please test @ jsc-zen3

boegelbot · 2024-02-02T15:10:08Z

@bedroge: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=19754 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_19754 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 3553

Test results coming soon (I hope)...

- notification for comment with ID 1924062243 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

bedroge · 2024-02-02T15:11:42Z

Test report by @bedroge
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
node63 - Linux Rocky Linux 8.9, x86_64, AMD EPYC 7763 64-Core Processor (zen3), Python 3.6.8
See https://gist.github.com/bedroge/5aeca81d16227f95bdbad2f39baf1821 for a full test report.

boegelbot · 2024-02-02T15:15:09Z

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.3, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.18
See https://gist.github.com/boegelbot/ca4ed85a7ee0ae5e6394b6da9291156a for a full test report.

bedroge

Lgtm

bedroge · 2024-02-02T15:38:28Z

Going in, thanks @sassy-crick!

adding easyconfigs: yt-4.3.0-foss-2022a.eb

1a76e41

sassy-crick added the new label Jan 30, 2024

sassy-crick changed the title ~~{vis}[foss/2022a] yt v4.3.0~~ {vis}[foss/2022a] yt v4.3.0 WIP Jan 30, 2024

sassy-crick added the help wanted label Jan 30, 2024

sassy-crick marked this pull request as draft January 30, 2024 17:49

Problem fixed by adding Cython

512fe66

sassy-crick changed the title ~~{vis}[foss/2022a] yt v4.3.0 WIP~~ {vis}[foss/2022a] yt v4.3.0 Jan 30, 2024

sassy-crick removed the help wanted label Jan 30, 2024

sassy-crick marked this pull request as ready for review January 30, 2024 22:03

Merge branch 'develop' of https://github.com/easybuilders/easybuild-e…

c2169c5

…asyconfigs into 20240130174051_new_pr_yt430

bedroge requested changes Jan 31, 2024

View reviewed changes

easybuild/easyconfigs/y/yt/yt-4.3.0-foss-2022a.eb Outdated Show resolved Hide resolved

easybuild/easyconfigs/y/yt/yt-4.3.0-foss-2022a.eb Outdated Show resolved Hide resolved

sassy added 2 commits February 2, 2024 13:54

sympy version changed to 1.10.1

b0c3a86

sanity check command removed as requested

5910ef7

bedroge approved these changes Feb 2, 2024

View reviewed changes

bedroge added this to the release after 4.9.0 milestone Feb 2, 2024

bedroge merged commit abb5456 into easybuilders:develop Feb 2, 2024
9 checks passed

sassy-crick deleted the 20240130174051_new_pr_yt430 branch February 2, 2024 19:54

sassy-crick mentioned this pull request Feb 2, 2024

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{vis}[foss/2022a] yt v4.3.0 #19754

{vis}[foss/2022a] yt v4.3.0 #19754

sassy-crick commented Jan 30, 2024 •

edited by bedroge

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{vis}[foss/2022a] yt v4.3.0 #19754

{vis}[foss/2022a] yt v4.3.0 #19754

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sassy-crick commented Jan 30, 2024 • edited by bedroge

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edited by bedroge