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add missing dependency on GMP in R 3.2.3 easyconfigs (REVIEW) #3226

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merged 3 commits into from Jun 17, 2016

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@boegel boegel commented Jun 17, 2016

Without this:

$ module load R/3.2.3-intel-2016a
$ ldd $EBROOTR/lib64/R/library/igraph/libs/igraph.so | grep libgmp
    libgmp.so.3 => /usr/lib64/libgmp.so.3 (0x00002aaaaccde000)

You can force the reinstallation of only igraph with:

$ module load R/3.2.3-intel-2016a
$ rm -rf $EBROOTR/lib64/R/library/igraph
$ module unload R
$ eb R-3.2.3-intel-2016a.eb -dfk
$ module load R/3.2.3-intel-2016a
$ ldd $EBROOTR/lib64/R/library/igraph/libs/igraph.so | grep libgmp
    libgmp.so.10 => /user/scratch/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/GMP/6.1.0-intel-2016a/lib/libgmp.so.10 (0x00002aaaaccde000)

@boegel boegel added this to the v2.9.0 milestone Jun 17, 2016
@boegel boegel changed the title add missing dependency on GMP in R 3.2.3 easyconfigs add missing dependency on GMP in R 3.2.3 easyconfigs (WIP) Jun 17, 2016
@wpoely86
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👍

@boegel boegel changed the title add missing dependency on GMP in R 3.2.3 easyconfigs (WIP) add missing dependency on GMP in R 3.2.3 easyconfigs (REVIEW) Jun 17, 2016
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boegel commented Jun 17, 2016

Test report by @boegel
SUCCESS
Build succeeded for 4 out of 4 (4 easyconfigs in this PR)
node2159.delcatty.os - Linux SL 6.7, Intel(R) Xeon(R) CPU E5-2670 0 @ 2.60GHz, Python 2.6.6
See https://gist.github.com/db8d6286469b76edbcbf1a814c383227 for a full test report.

@boegel boegel merged commit 53eddf7 into easybuilders:develop Jun 17, 2016
@boegel boegel deleted the R323_GMP_dep branch June 17, 2016 15:45
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2 participants