{devel}[goolfc/2017.02] PyTorch v0.3.0

easybuild/easyconfigs/c/CMake/CMake-3.9.1-GCCcore-5.4.0.eb

@@ -0,0 +1,41 @@
+easyblock = 'ConfigureMake'
+
+name = 'CMake'
+version = '3.9.1'
+
+homepage = 'http://www.cmake.org'
+
+description = """
+ CMake, the cross-platform, open-source build system.  CMake is a family of
+ tools designed to build, test and package software.
+"""
+
+toolchain = {'name': 'GCCcore', 'version': '5.4.0'}
+
+source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s']
+sources = [SOURCELOWER_TAR_GZ]
+checksums = ['d768ee83d217f91bb597b3ca2ac663da7a8603c97e1f1a5184bc01e0ad2b12bb']
+
+configopts = '-- -DCMAKE_USE_OPENSSL=1 -DCMAKE_PREFIX_PATH=$EBROOTNCURSES'
+
+builddependencies = [
+    ('binutils', '2.26'),
+]
+
+dependencies = [
+    ('ncurses', '6.0'),
+    # OS dependency should be preferred if the os version is more recent then this version,
+    # it's nice to have an up to date openssl for security reasons
+    # ('OpenSSL', '1.1.0c'),
+]
+
+osdependencies = [
+    ('openssl-devel', 'libssl-dev', 'libopenssl-devel'),
+]
+
+sanity_check_paths = {
+    'files': ["bin/%s" % x for x in ['ccmake', 'cmake', 'cpack', 'ctest']],
+    'dirs': [],
+}
+
+moduleclass = 'devel'

easybuild/easyconfigs/l/libyaml/libyaml-0.1.7-GCCcore-5.4.0.eb

@@ -0,0 +1,28 @@
+##
+# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild
+#
+# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA
+# Authors::   Nils Christian <nils.christian@uni.lu>
+# License::   MIT/GPL
+# $Id$
+##
+
+easyblock = 'ConfigureMake'
+
+name = 'libyaml'
+version = '0.1.7'
+
+homepage = 'http://pyyaml.org/wiki/LibYAML'
+description = """LibYAML is a YAML 1.1 parser and emitter written in C."""
+
+toolchain = {'name': 'GCCcore', 'version': '5.4.0'}
+
+source_urls = ['http://pyyaml.org/download/libyaml/']
+sources = ['yaml-%(version)s.tar.gz']
+
+sanity_check_paths = {
+    'files': ['include/yaml.h', 'lib/libyaml.a', 'lib/libyaml.%s' % SHLIB_EXT],
+    'dirs': ['lib/pkgconfig']
+}
+
+moduleclass = 'lib'

easybuild/easyconfigs/p/PyTorch/PyTorch-0.3.0-goolfc-2017.02-Python-3.5.2.eb

@@ -0,0 +1,79 @@
+easyblock = 'PythonPackage'
+
+name = 'PyTorch'
+version = '0.3.0'
+versionsuffix = '-Python-%(pyver)s'
+
+homepage = 'http://pytorch.org/'
+description = """Tensors and Dynamic neural networks in Python with strong GPU acceleration.
+PyTorch is a deep learning framework that puts Python first."""
+
+toolchain = {'name': 'goolfc', 'version': '2017.02'}
+
+# This environment is needed to prevent setup.py from invoking git to determine version.
+prebuildopts = 'PYTORCH_BUILD_VERSION=%(version)s PYTORCH_BUILD_NUMBER=1'
+
+pytorchdir = 'pytorch-%(version)s'
+extract_cmd_pattern = 'tar -C %s/%s --strip-components=1 -xf %%s'
+
+source_urls = [
+    'https://github.com/pytorch/pytorch/archive',
+    'https://github.com/facebookincubator/gloo/archive',
+    'https://github.com/google/googletest/archive',
+    'https://github.com/nanopb/nanopb/archive',
+    'https://github.com/pybind/pybind11/archive',
+    'https://github.com/wjakob/clang-cindex-python3/archive',
+]
+
+# PyTorch pulls in a bunch of submodules which don't have releases.
+# We download the submodule revisions from their repos.
+sources = [
+    'v%(version)s.tar.gz',  # PyTorch
+    {
+        'filename': '05ad98aeb66fabc7c8126e6068d4a70134d4b80d.tar.gz',
+        'extract_cmd': extract_cmd_pattern % (pytorchdir, 'torch/lib/gloo'),
+    },
+    {
+        'filename': 'ec44c6c1675c25b9827aacd08c02433cccde7780.tar.gz',
+        'extract_cmd': extract_cmd_pattern % (pytorchdir, 'torch/lib/gloo/third-party/googletest'),
+    },
+    {
+        'filename': '14efb1a47a496652ab08b1ebcefb0ea24ae4a5e4.tar.gz',
+        'extract_cmd': extract_cmd_pattern % (pytorchdir, 'torch/lib/nanopb'),
+    },
+    {
+        'filename': '9f6a636e547fc70a02fa48436449aad67080698f.tar.gz',
+        'extract_cmd': extract_cmd_pattern % (pytorchdir, 'torch/lib/pybind11'),
+    },
+    {
+        'filename': '6a00cbc4a9b8e68b71caf7f774b3f9c753ae84d5.tar.gz',
+        'extract_cmd': extract_cmd_pattern % (pytorchdir, 'torch/lib/pybind11/tools/clang'),
+    },
+]
+
+checksums = [
+    'f9f405f4e6a023af20ee3f005ca5213f6c71d3fd4ee0c58407f53f15fa55c85e',  # pytorch-0.3.0.tar.gz
+    'e19072df8b5f88cb81c6263e90b539c4b5ea93eeb9c68055603137eb7793dba7',  # gloo-05ad98a.tar.gz
+    '175a22300b3450e27e5f2e6f95cc9abca74617cbc21a1e0ed19bdfbd22ea0305',  # googletest-ec44c6c.tar.gz
+    '7d18b9bdc10de382da1643c2b1b0227131db47eef89998050b5e0a829d3bd0af',  # nanopb-14efb1a.tar.gz
+    '3a53dac15e87056a9724b9b6403343b47bb71fec26c090979562f71d7ec9ee98',  # pybind11-9f6a636.tar.gz
+    '828e0d6238e2129a9e08071750dc16ba10e38eacf96f21b8a71e501c2085b282',  # clang-cindex-python3-6a00cbc.tar.gz
+]
+
+options = {'modulename': 'torch'}
+
+builddependencies = [
+    ('CMake', '3.9.1'),
+]
+
+dependencies = [
+    ('Python', '3.5.2'),
+    ('PyYAML', '3.12', versionsuffix),
+]
+
+sanity_check_paths = {
+    'files': [],
+    'dirs': ['lib/python%(pyshortver)s/site-packages'],
+}
+
+moduleclass = 'devel'

easybuild/easyconfigs/p/PyYAML/PyYAML-3.12-goolfc-2017.02-Python-3.5.2.eb

@@ -0,0 +1,27 @@
+easyblock = 'PythonPackage'
+
+name = 'PyYAML'
+version = '3.12'
+versionsuffix = '-Python-%(pyver)s'
+
+homepage = "https://pypi.python.org/pypi/PyYAML/"
+description = """PyYAML is a YAML parser and emitter for the Python programming language."""
+
+toolchain = {'name': 'goolfc', 'version': '2017.02'}
+
+source_urls = [PYPI_SOURCE]
+sources = [SOURCE_TAR_GZ]
+
+dependencies = [
+    ('Python', '3.5.2'),
+    ('libyaml', '0.1.7'),
+]
+
+options = {'modulename': 'yaml'}
+
+sanity_check_paths = {
+    'files': [],
+    'dirs': ['lib/python%(pyshortver)s/site-packages'],
+}
+
+moduleclass = 'lib'

easybuild/easyconfigs/p/Python/Python-3.5.2-goolfc-2017.02.eb

@@ -0,0 +1,123 @@
+name = 'Python'
+version = '3.5.2'
+
+homepage = 'http://python.org/'
+description = """Python is a programming language that lets you work more quickly and integrate your systems
+ more effectively."""
+
+toolchain = {'name': 'goolfc', 'version': '2017.02'}
+toolchainopts = {'pic': True}
+
+source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/']
+sources = [SOURCE_TGZ]
+
+# python needs bzip2 to build the bz2 package
+dependencies = [
+    ('bzip2', '1.0.6'),
+    ('zlib', '1.2.11'),
+    ('libreadline', '6.3'),
+    ('ncurses', '6.0'),
+    ('SQLite', '3.13.0'),
+    ('Tk', '8.6.5'),  # this requires a full X11 stack
+    ('GMP', '6.1.1'),
+    ('XZ', '5.2.2'),
+    ('libffi', '3.2.1'),
+    # OS dependency should be preferred if the os version is more recent then this version,
+    # it's nice to have an up to date openssl for security reasons
+    # ('OpenSSL', '1.0.2h'),
+]
+
+osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')]
+
+# order is important!
+# package versions updated May 28th 2015
+exts_list = [
+    ('setuptools', '23.1.0', {
+        'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'],
+    }),
+    ('pip', '8.1.2', {
+        'source_urls': ['https://pypi.python.org/packages/source/p/pip/'],
+    }),
+    ('nose', '1.3.7', {
+        'source_urls': ['https://pypi.python.org/packages/source/n/nose/'],
+    }),
+    ('numpy', '1.11.1', {
+        'source_urls': ['https://pypi.python.org/packages/source/n/numpy'],
+        'patches': ['numpy-1.8.0-mkl.patch'],
+    }),
+    ('scipy', '0.17.1', {
+        'source_urls': ['https://pypi.python.org/packages/source/s/scipy'],
+    }),
+    ('blist', '1.3.6', {
+        'source_urls': ['https://pypi.python.org/packages/source/b/blist/'],
+    }),
+    ('mpi4py', '1.3.1', {
+        'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'],
+    }),
+    ('paycheck', '1.0.2', {
+        'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'],
+        'patches': [
+            'paycheck-1.0.2_setup-open-README-utf8.patch',
+        ],
+    }),
+    ('pbr', '1.10.0', {
+        'source_urls': ['https://pypi.python.org/packages/source/p/pbr/'],
+    }),
+    ('lockfile', '0.12.2', {
+        'source_urls': ['https://pypi.python.org/packages/source/l/lockfile/'],
+    }),
+    ('Cython', '0.24', {
+        'source_urls': ['https://pypi.python.org/packages/source/c/cython/'],
+    }),
+    ('six', '1.10.0', {
+        'source_urls': ['https://pypi.python.org/packages/source/s/six/'],
+    }),
+    ('dateutil', '2.5.3', {
+        'source_tmpl': 'python-%(name)s-%(version)s.tar.gz',
+        'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'],
+    }),
+    ('deap', '1.0.2', {
+        'source_tmpl': '%(name)s-%(version)s.post2.tar.gz',
+        'source_urls': ['https://pypi.python.org/packages/source/d/deap/'],
+        'patches': [
+            'deap-1.0.2_setup-open-README-utf8.patch',
+        ],
+    }),
+    ('decorator', '4.0.10', {
+        'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'],
+    }),
+    ('arff', '2.1.0', {
+        'source_tmpl': 'liac-%(name)s-%(version)s.zip',
+        'source_urls': ['https://pypi.python.org/packages/source/l/liac-arff/'],
+    }),
+    ('pycrypto', '2.6.1', {
+        'modulename': 'Crypto',
+        'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'],
+    }),
+    ('ecdsa', '0.13', {
+        'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'],
+    }),
+    ('cryptography', '1.4', {
+        'source_urls': ['https://pypi.python.org/packages/source/c/cryptography/'],
+    }),
+    ('paramiko', '2.0.1', {
+        'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'],
+    }),
+    ('pyparsing', '2.1.5', {
+        'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'],
+    }),
+    ('netifaces', '0.10.4', {
+        'source_urls': ['https://pypi.python.org/packages/source/n/netifaces'],
+    }),
+    ('netaddr', '0.7.18', {
+        'source_urls': ['https://pypi.python.org/packages/source/n/netaddr'],
+    }),
+    ('pandas', '0.18.1', {
+        'source_urls': ['https://pypi.python.org/packages/source/p/pandas'],
+    }),
+    ('virtualenv', '15.0.2', {
+        'source_urls': ['https://pypi.python.org/packages/source/v/virtualenv'],
+    }),
+]
+
+moduleclass = 'lang'

easybuild/easyconfigs/s/SQLite/SQLite-3.13.0-GCCcore-5.4.0.eb

@@ -0,0 +1,44 @@
+##
+# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild
+#
+# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA
+# Authors::   Fotis Georgatos <fotis@cern.ch>
+# License::   MIT/GPL
+# $Id$
+#
+# This work implements a part of the HPCBIOS project and is a component of the policy:
+# http://hpcbios.readthedocs.org/en/latest/
+##
+
+easyblock = 'ConfigureMake'
+
+name = 'SQLite'
+version = '3.13.0'
+
+homepage = 'http://www.sqlite.org/'
+description = 'SQLite: SQL Database Engine in a C Library'
+
+toolchain = {'name': 'GCCcore', 'version': '5.4.0'}
+
+source_urls = ['http://www.sqlite.org/2016/']
+version_minor_etc = version.split('.')[1:]
+version_minor_etc += '0' * (3 - len(version_minor_etc))
+version_str = '%(version_major)s' + ''.join('%02d' % int(x) for x in version_minor_etc)
+sources = ['sqlite-autoconf-%s.tar.gz' % version_str]
+
+builddependencies = [
+    ('binutils', '2.26'),
+]
+
+dependencies = [
+    ('libreadline', '6.3'),
+    ('Tcl', '8.6.5'),
+]
+
+sanity_check_paths = {
+    'files': ['bin/sqlite3', 'include/sqlite3ext.h', 'include/sqlite3.h', 'lib/libsqlite3.a',
+              'lib/libsqlite3.%s' % SHLIB_EXT],
+    'dirs': ['lib/pkgconfig'],
+}
+
+moduleclass = 'devel'

easybuild/easyconfigs/t/Tcl/Tcl-8.6.5-GCCcore-5.4.0.eb

@@ -0,0 +1,30 @@
+easyblock = 'ConfigureMake'
+
+name = 'Tcl'
+version = '8.6.5'
+
+homepage = 'http://www.tcl.tk/'
+description = """Tcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language,
+suitable for a very wide range of uses, including web and desktop applications, networking, administration,
+testing and many more."""
+
+toolchain = {'name': 'GCCcore', 'version': '5.4.0'}
+
+source_urls = ["http://prdownloads.sourceforge.net/tcl"]
+sources = ['%(namelower)s%(version)s-src.tar.gz']
+
+builddependencies = [
+    ('binutils', '2.26'),
+]
+
+dependencies = [
+    ('zlib', '1.2.11'),
+]
+
+configopts = '--enable-threads EXTRA_INSTALL="install-private-headers"'
+
+runtest = 'test'
+
+start_dir = 'unix'
+
+moduleclass = 'lang'