{lang}[GCCcore/8.2.0] Python v2.7.15 #7821

boegel · 2019-03-06T15:47:40Z

(created using eb --new-pr)

boegel · 2019-03-06T17:28:15Z

@vanzod @Micket As discussed during the conf call: which additional Python packages should be consider including as well?

wheel is already there, I added pytest already myself.

I guess Jinja2 (+ deps) is a good candidate. Anything else?

Micket · 2019-03-06T20:00:25Z

Maybe

Pylint
psutil, psrecord
lxml
Sphinx

There are also lots deps from various bundles that could be included as well

ASE deps: MarkupSafe, Jinja2, Wekzeug, Click, itsdangerous, Flask
Tensorflow deps: protobuf-python, absl-py, astor, gast, grpcio, Markdown, termcolor, Werkzeug
Sphinx deps (if we don't include all of sphinx): packaging, MarkupSafe, Pygments, imagesize, Docutils, Jinja2, snowballstemmer, Babel, typing
pyparsing, Cheetah

boegel · 2019-03-07T12:17:43Z

@Micket I'd only include additional extensions if they're common dependencies for multiple other easyconfigs (Jinja2 certainly fits, Click).
Sphinx also makes sense, I guess pylint does too (although it's not a common dep).

Not sure about psutil & psrecord, any reason you'd include those?

lxml implies also including libxml2 and libxslt as dependencies.

Not a big fan of including Flask and all required packages (since it's a framework for webapps).

Most of the others you mention are only relevant for one or a handful at best of applications?

You also mentioned pkgconfig (the Python packages), that should also be included?

Micket · 2019-03-07T19:26:00Z

@boegel Yeah I just looked at some packages that were used by several other bundles. psutil was included in a 9 bundles (with recent easyconfigs). psrecord wasn't (i incorrectly thought it was).
I was basically just grep foo -R in the easyconfigs tree to see if there was multiple matches.

I suppose pkgconfig is unnecessary, as it's "just" used during configurations, additional pythonpaths won't matter.

I don't really have any strong feelings about this, but, at least if it doesn't bring any additional deps, why not?

boegel · 2019-03-08T20:11:13Z

One more to definitely include: future.

…with GCCcore/8.2.0 toolchain

Micket · 2019-03-15T10:44:39Z

Test report by @Micket
FAILED
Build succeeded for 2 out of 4 (4 easyconfigs in this PR)
hebbe-s1.int.private - Linux centos 6.10, Intel(R) Xeon(R) CPU E5-2650 v3 @ 2.30GHz, Python 2.7.14
See https://gist.github.com/1c2ad023901dd177c4402900e90fee9c for a full test report.

ignore this, this was just my fault.

boegel · 2019-03-15T10:46:19Z

Test report by @boegel
SUCCESS
Build succeeded for 4 out of 4 (4 easyconfigs in this PR)
node3140.skitty.os - Linux centos linux 7.6.1810, Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, Python 2.7.5
See https://gist.github.com/17b1b9e8cc9560d448e150041d84fe3d for a full test report.

boegel · 2019-03-15T10:51:17Z

Test report by @boegel
SUCCESS
Build succeeded for 4 out of 4 (4 easyconfigs in this PR)
node2523.golett.os - Linux centos linux 7.6.1810, Intel(R) Xeon(R) CPU E5-2680 v3 @ 2.50GHz, Python 2.7.5
See https://gist.github.com/6d8e1f6e8ef3b19385dab922ae1ab978 for a full test report.

boegel · 2019-03-15T10:53:37Z

Test report by @boegel
SUCCESS
Build succeeded for 4 out of 4 (4 easyconfigs in this PR)
node2044.delcatty.os - Linux centos linux 7.6.1810, Intel(R) Xeon(R) CPU E5-2670 0 @ 2.60GHz, Python 2.7.5
See https://gist.github.com/aa4318e68182428629c3efeae139860c for a full test report.

akesandgren · 2019-03-15T11:28:19Z

Test report by @akesandgren
SUCCESS
Build succeeded for 6 out of 6 (4 easyconfigs in this PR)
b-an03.hpc2n.umu.se - Linux ubuntu 16.04, Intel(R) Xeon(R) CPU E5-2690 v4 @ 2.60GHz, Python 2.7.12
See https://gist.github.com/44c20c13a1e8b58facf73f1db5bc1ba5 for a full test report.

verdurin · 2019-03-15T12:12:52Z

Test report by @verdurin
FAILED
Build succeeded for 4 out of 8 (4 easyconfigs in this PR)
rescomp2 - Linux centos linux 7.3.1611, Intel(R) Xeon(R) Gold 6126 CPU @ 2.60GHz, Python 2.7.5
See https://gist.github.com/daf2a3e791aee69b3a4666070d34c11d for a full test report.

Micket · 2019-03-15T12:15:12Z

Test report by @Micket
SUCCESS
Build succeeded for 4 out of 4 (4 easyconfigs in this PR)
vera-c1 - Linux centos linux 7.6.1810, Intel Xeon Processor (Skylake), Python 2.7.5
See https://gist.github.com/c90ee72e49b2c6d999302da3cb5095c5 for a full test report.

boegel · 2019-03-15T12:42:56Z

@Micket Forgot --robot with first attempt?

@verdurin Can you explain this issue?

Failed to create directory /dev/shm/ncurses/6.1/GCCcore-8.2.0: [Errno 13] Permission denied: '/dev/shm/ncurses/6.1/GCCcore-8.2.0'

smoors · 2019-03-15T13:51:24Z

Test report by @smoors
SUCCESS
Build succeeded for 4 out of 4 (4 easyconfigs in this PR)
nic425 - Linux centos linux 7.5.1804, Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz, Python 2.7.5
See https://gist.github.com/a52d74463b72b5baa84a25e94e9ea54c for a full test report.

verdurin · 2019-03-15T13:58:54Z

Test report by @verdurin
FAILED
Build succeeded for 3 out of 4 (4 easyconfigs in this PR)
rescomp2 - Linux centos linux 7.3.1611, Intel(R) Xeon(R) Gold 6126 CPU @ 2.60GHz, Python 2.7.5
See https://gist.github.com/0a7e227548d2c512bbeae1f22ea13e38 for a full test report.

boegel · 2019-03-15T14:15:46Z

@verdurin Does this ring any bells for you?

== 2019-03-15 13:58:49,504 build_log.py:162 ERROR EasyBuild crashed with an error (at ?:124 in __init__): Sanity check failed: extensions sanity check failed for 2 extensions: bcrypt, paramiko
failing sanity check for 'bcrypt' extension: command "python -c "import bcrypt"" failed; output:
Traceback (most recent call last):
  File "<string>", line 1, in <module>
  File "/well/rescomp/eb/software/Python/2.7.15-GCCcore-8.2.0/lib/python2.7/site-packages/bcrypt/__init__.py", line 25, in <module>
    from . import _bcrypt
ImportError: /users/rescomp/adamh/.local/lib/python2.7/site-packages/_cffi_backend.so: undefined symbol: PyUnicodeUCS2_FromUnicode,

smoors · 2019-03-15T14:34:54Z

Test report by @smoors
SUCCESS
Build succeeded for 4 out of 4 (4 easyconfigs in this PR)
nic75 - Linux centos linux 7.5.1804, Intel(R) Xeon(R) CPU E5-2680 v4 @ 2.40GHz, Python 2.7.5
See https://gist.github.com/bc0cfc8372479a47697649fe0d0f238d for a full test report.

smoors · 2019-03-15T14:36:37Z

Test report by @smoors
SUCCESS
Build succeeded for 4 out of 4 (4 easyconfigs in this PR)
nic151 - Linux centos linux 7.5.1804, Intel(R) Xeon(R) CPU E5-2680 v2 @ 2.80GHz, Python 2.7.5
See https://gist.github.com/ff114fd453eeccd0362554eab941da6a for a full test report.

verdurin · 2019-03-15T14:48:01Z

Test report by @verdurin
SUCCESS
Build succeeded for 1 out of 1 (4 easyconfigs in this PR)
rescomp2 - Linux centos linux 7.3.1611, Intel(R) Xeon(R) Gold 6126 CPU @ 2.60GHz, Python 2.7.5
See https://gist.github.com/83bd8b9bb02a9441f2beb03884534260 for a full test report.

verdurin · 2019-03-15T14:49:37Z

@verdurin Does this ring any bells for you?

== 2019-03-15 13:58:49,504 build_log.py:162 ERROR EasyBuild crashed with an error (at ?:124 in __init__): Sanity check failed: extensions sanity check failed for 2 extensions: bcrypt, paramiko
failing sanity check for 'bcrypt' extension: command "python -c "import bcrypt"" failed; output:
Traceback (most recent call last):
  File "<string>", line 1, in <module>
  File "/well/rescomp/eb/software/Python/2.7.15-GCCcore-8.2.0/lib/python2.7/site-packages/bcrypt/__init__.py", line 25, in <module>
    from . import _bcrypt
ImportError: /users/rescomp/adamh/.local/lib/python2.7/site-packages/_cffi_backend.so: undefined symbol: PyUnicodeUCS2_FromUnicode,

A local anomaly, now fixed.

vanzod · 2019-03-15T15:55:31Z

Test report by @vanzod
SUCCESS
Build succeeded for 6 out of 6 (4 easyconfigs in this PR)
cermis - Linux debian 9.8, Intel(R) Xeon(R) CPU X5670 @ 2.93GHz, Python 2.7.13
See https://gist.github.com/ef45f75961aebc1be9e1ebbda0eb3c65 for a full test report.

vanzod · 2019-03-15T16:12:52Z

Going in, thanks @boegel!

migueldiascosta · 2019-03-15T23:44:53Z

Test report by @migueldiascosta
SUCCESS
Build succeeded for 4 out of 4 (4 easyconfigs in this PR)
grc-cluster1 - Linux centos 6.10, Intel(R) Xeon(R) CPU E5-2640 0 @ 2.50GHz, Python 2.7.14
See https://gist.github.com/3259ca2d26f27d1bda2f926bedc6961b for a full test report.

{lang}[GCCcore/8.2.0] Python v2.7.15

0c3acfb

boegel added the update label Mar 6, 2019

boegel changed the title ~~{lang}[GCCcore/8.2.0] Python v2.7.15~~ {lang}[GCCcore/8.2.0] Python v2.7.15 (WIP) Mar 6, 2019

boegel added this to the next release (3.8.2) milestone Mar 6, 2019

boegel mentioned this pull request Mar 14, 2019

{lang}[GCCcore/8.2.0] Python v3.7.2 #7898

Merged

add Jinja2, Sphinx, Click psutil, future extensiosn to Python 2.7.15 …

6c9b4b5

…with GCCcore/8.2.0 toolchain

vanzod approved these changes Mar 15, 2019

View reviewed changes

vanzod merged commit 639edb5 into easybuilders:develop Mar 15, 2019

boegel deleted the 20190306164729_new_pr_Python2715 branch March 15, 2019 16:22

boegel changed the title ~~{lang}[GCCcore/8.2.0] Python v2.7.15 (WIP)~~ {lang}[GCCcore/8.2.0] Python v2.7.15 Mar 15, 2019

boegel mentioned this pull request Apr 3, 2019

EasyBuild v4.0 easybuilders/easybuild#447

Closed

18 tasks

boegel mentioned this pull request Apr 30, 2019

add easyconfig for 'Python-core' built with GCCcore which can be used as a build dep #5072

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{lang}[GCCcore/8.2.0] Python v2.7.15 #7821

{lang}[GCCcore/8.2.0] Python v2.7.15 #7821

boegel commented Mar 6, 2019

boegel commented Mar 6, 2019

Micket commented Mar 6, 2019

boegel commented Mar 7, 2019

Micket commented Mar 7, 2019

boegel commented Mar 8, 2019

Micket commented Mar 15, 2019 •

edited

boegel commented Mar 15, 2019

boegel commented Mar 15, 2019

boegel commented Mar 15, 2019

akesandgren commented Mar 15, 2019

verdurin commented Mar 15, 2019

Micket commented Mar 15, 2019

boegel commented Mar 15, 2019

smoors commented Mar 15, 2019

verdurin commented Mar 15, 2019

boegel commented Mar 15, 2019

smoors commented Mar 15, 2019

smoors commented Mar 15, 2019

verdurin commented Mar 15, 2019

verdurin commented Mar 15, 2019

vanzod commented Mar 15, 2019

vanzod commented Mar 15, 2019

migueldiascosta commented Mar 15, 2019

{lang}[GCCcore/8.2.0] Python v2.7.15 #7821

{lang}[GCCcore/8.2.0] Python v2.7.15 #7821

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boegel commented Mar 6, 2019

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Micket commented Mar 15, 2019 • edited

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Micket commented Mar 15, 2019 •

edited