Orienotinus-phylogeny

Reproducible code for the study "Replicated radiation of a plant clade along a cloud forest archipelago"

Michael J. Donoghue ^1,4, Deren A. R. Eaton ², Carlos A. Maya-Lastra ², Michael J. Landis ³, Patrick W. Sweeney ⁴, Mark E. Olson ⁵, N. Ivalú Cacho ⁵, Morgan K. Moeglein ¹, Jordan R. Gardner ¹, Nora M. Heaphy ¹, Matiss Castorena ^5,6, Alí Segovia Rivas ⁵, Wendy L. Clement ⁷, and Erika J. Edwards ^1,4

Folder structure

• Analyses directory for jupyter notebooks, R, python, and bash scripts used in this study.
• Raw_data directory for raw databases and link for sequence and snps files.
• Supplementary_materials directory for suplementary material cited in the paper.

Footnotes

¹ Department of Ecology and Evolutionary Biology, Yale University, PO Box 208106, New Haven, CT 06520, USA.
² Department of Ecology, Evolution & Environmental Biology, Columbia University, New York, NY 10027, USA.
³ Department of Biology, Washington University in St. Louis, One Brookings Drive, St. Louis, MO 63130 USA.
⁴ Peabody Museum of Natural History, Yale University, PO Box 208118, New Haven, CT 06520, USA.
⁵ Departamento de Botánica, Instituto de Biología, Universidad Nacional Autónoma de México, 04510 Ciudad de México, México.
⁶ Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ 85719 USA.
⁷ Department of Biology, The College of New Jersey, 2000 Pennington Road, Ewing, NJ 08628 USA.