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installation problem #51
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I am using Windows 10 Education version 1803 OS build 17134.765. but then I tried to run the basic tutorial given on ecell4 read the docs but it did not work. |
@Harsimran2019 I also tried on WIndows 10 with Anaconda3 (64-bit). Did you install
This is what I did on Anaconda Prompt (not on Jupyter Notebook):
Please remove all ecell4 staffs once, and try again after installing
Did you fail |
@Harsimran2019
And the ImportError should be related to loading hdf5.dll. |
@Harsimran2019
|
It is 64 bit version of windows but I installed 32 bit miniconda as suggested on installation instructions website. |
@Harsimran2019 |
@Harsimran2019 |
Are the instructions to use Docker are as given on website? |
@Harsimran2019
No. I will add it soon. Please wait a moment. |
@Harsimran2019 |
@Harsimran2019
|
Alright. Thank you so much for your help. Kindly let me know when this is fixed. |
@Harsimran2019 from ecell4 import *
from ecell4_base.core import *
with species_attributes():
A | {'D': 1, 'location': 'M', 'dimension': 2}
M | {'dimension': 2}
surface = Sphere(ones() * 0.5, 0.4).surface()
obs = FixedIntervalTrajectoryObserver(1e-4)
run_simulation(
0.4, y0={'A': 10}, structures={'M': surface},
solver='spatiocyte', observers=obs, return_type=None)
viz.plot_trajectory(obs, interactive=True)
As @kozo2 explained, we are preparing for the new version. This problem seems caused by the difference between versions.
A Python skill is enough to use ecell4. Slack (https://ecell-project.herokuapp.com/) is also open for questions. Please feel free to ask there. Thank you for your report! |
I am working on a new project that involves Ecell and hence I am trying to install it. I have tried everything as mentioned in instructions but there is some issue with the installation for ecell4-base. If I type in command pip install ecell4 it says that it could not fulfil the requirement of ecell4-base because it could not find ecell4-base in ecell4 version. I am relatively new to this field so kindly help me. Please. Suggest the changes I can do and also why this issue is happening in first place?
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