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satya-arjunan committed Jan 13, 2015
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Expand Up @@ -250,8 +250,8 @@ Figure 1: The E-Cell Session Monitor
}
Figure 2: E-Cell Model (EM) description file for the MinDE model. The
file is available in the Spatiocyte source package as
2010.arjunan.syst.synth.biol.wt.em.
file is available in the Spatiocyte source package in the examples directory
as 2010.arjunan.syst.synth.biol.wt.em.

.. image:: https://raw.github.com/ecell/spatiocyte-docs/master/images/image13.png

Expand Down Expand Up @@ -298,11 +298,11 @@ To start ecell3-session-monitor, run following command from your shell

$ PYTHONPATH=$HOME/root/lib/python2.7/site-packages:/usr/local/lib/python2.7/site-packages $HOME/root/bin/ecell3-session-monitor

To run a sample for Spatiocyte, run following commands from your shell
To run an example model with Spatiocyte, run following commands from your shell

::

$ $HOME/root/bin/ecell3-em2eml samples/2010.arjunan.syst.synth.biol/2010.arjunan.syst.synth.biol.wt.em
$ $HOME/root/bin/ecell3-em2eml examples/published/2010.arjunan.syst.synth.biol/2010.arjunan.syst.synth.biol.wt.em
$ $HOME/root/bin/ecell3-session -f 2010.arjunan.syst.synth.biol.wt.eml

If you succeed in Spatiocyte session, run following function with argument (in this case 10) from ecell session(, not from your shell).
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