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Just ran into this. It seems openj9_version_info.h is generated by the configure step, but deleted by make clean. So if you run configure and follow the instruction to then make clean you hit the problem. For a temporary work-around, just run the configure step again. If you know you will need to do a make clean, do it before running configure.
Error:
gmake[5]: Entering directory `/apps/was/openj9-openjdk-jdk9/build/linux-x86_64-normal-server-release/vm/util'
cc -DJAVA_SPEC_VERSION=9 -O3 -fno-strict-aliasing -g -MMD -DLINUX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -fPIC -DIPv6_FUNCTION_SUPPORT -DJ9HAMMER -m64 -Wimplicit -Wreturn-type -Werror -I. -I../include -I../oti -I../gc_include -I/apps/was/openj9-openjdk-jdk9/build/linux-x86_64-normal-server-release/vm/omr/gc/include -I../nls -I/apps/was/openj9-openjdk-jdk9/build/linux-x86_64-normal-server-release/vm/omr/include_core -DUT_DIRECT_TRACE_REGISTRATION -DTR_HOST_X86 -DOPENJ9_BUILD -c -o openj9_version.o openj9_version.c
gmake[3]: warning: -jN forced in submake: disabling jobserver mode.
openj9_version.c:27:33: fatal error: openj9_version_info.h: No such file or directory
#include "openj9_version_info.h"
gmake[5]: *** [openj9_version.o] Error 1
gmake[5]: *** Waiting for unfinished jobs....
Workaround:
This clearly isn't the fix, so not submitting a pull request
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