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GH-4622 change approach to writing the validation exception to more a…
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…lign with how RDF data is typically transmitted over HTTP
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hmottestad committed Oct 3, 2023
1 parent 7cfebab commit 5d652ee
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Showing 8 changed files with 213 additions and 100 deletions.
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Expand Up @@ -1076,6 +1076,13 @@ protected HttpResponse execute(HttpUriRequest method) throws IOException, RDF4JE
case HttpURLConnection.HTTP_UNAVAILABLE: // 503
throw new QueryInterruptedException();
default:

if (contentTypeIs(response, "application/shacl-validation-report")
&& getContentTypeSerialisation(response) == RDFFormat.BINARY) {
throw new RepositoryException(new RemoteShaclValidationException(
response.getEntity().getContent(), "", RDFFormat.BINARY));
}

ErrorInfo errInfo = getErrorInfo(response);
// Throw appropriate exception
if (errInfo.getErrorType() == ErrorType.MALFORMED_DATA) {
Expand All @@ -1087,10 +1094,10 @@ protected HttpResponse execute(HttpUriRequest method) throws IOException, RDF4JE
} else if (errInfo.getErrorType() == ErrorType.UNSUPPORTED_QUERY_LANGUAGE) {
throw new UnsupportedQueryLanguageException(errInfo.getErrorMessage());
} else if (contentTypeIs(response, "application/shacl-validation-report")) {
// Legacy support for validation exceptions prior to 4.3.3
RDFFormat format = getContentTypeSerialisation(response);
throw new RepositoryException(new RemoteShaclValidationException(
new StringReader(errInfo.toString()), "", format));

throw new RepositoryException(
new RemoteShaclValidationException(new StringReader(errInfo.toString()), "", format));
} else if (errInfo.toString().length() > 0) {
throw new RepositoryException(errInfo.toString());
} else {
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Expand Up @@ -11,6 +11,7 @@

package org.eclipse.rdf4j.http.client.shacl;

import java.io.InputStream;
import java.io.StringReader;

import org.eclipse.rdf4j.common.annotation.Experimental;
Expand All @@ -34,6 +35,10 @@ public RemoteShaclValidationException(StringReader stringReader, String s, RDFFo
remoteValidation = new RemoteValidation(stringReader, s, format);
}

public RemoteShaclValidationException(InputStream stringReader, String s, RDFFormat format) {
remoteValidation = new RemoteValidation(stringReader, s, format);
}

/**
* @return A Model containing the validation report as specified by the SHACL Recommendation
*/
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Expand Up @@ -12,6 +12,7 @@
package org.eclipse.rdf4j.http.client.shacl;

import java.io.IOException;
import java.io.InputStream;
import java.io.StringReader;

import org.eclipse.rdf4j.common.annotation.InternalUseOnly;
Expand All @@ -25,30 +26,29 @@

@InternalUseOnly
class RemoteValidation {

StringReader stringReader;
String baseUri;
RDFFormat format;

Model model;

RemoteValidation(StringReader stringReader, String baseUri, RDFFormat format) {
this.stringReader = stringReader;
this.baseUri = baseUri;
this.format = format;
RemoteValidation(InputStream inputStream, String baseUri, RDFFormat format) {
try {
ParserConfig parserConfig = new ParserConfig().set(BasicParserSettings.PRESERVE_BNODE_IDS, true);
model = Rio.parse(inputStream, baseUri, format, parserConfig, SimpleValueFactory.getInstance(),
new ParseErrorLogger());
} catch (IOException e) {
throw new RuntimeException(e);
}
}

Model asModel() {
if (model == null) {
try {
ParserConfig parserConfig = new ParserConfig().set(BasicParserSettings.PRESERVE_BNODE_IDS, true);
model = Rio.parse(stringReader, baseUri, format, parserConfig, SimpleValueFactory.getInstance(),
new ParseErrorLogger());
} catch (IOException e) {
throw new RuntimeException(e);
}
RemoteValidation(StringReader stringReader, String baseUri, RDFFormat format) {
try {
ParserConfig parserConfig = new ParserConfig().set(BasicParserSettings.PRESERVE_BNODE_IDS, true);
model = Rio.parse(stringReader, baseUri, format, parserConfig, SimpleValueFactory.getInstance(),
new ParseErrorLogger());
} catch (IOException e) {
throw new RuntimeException(e);
}
}

Model asModel() {
return model;
}

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5 changes: 5 additions & 0 deletions tools/server-spring/pom.xml
Original file line number Diff line number Diff line change
Expand Up @@ -27,6 +27,11 @@
<artifactId>rdf4j-config</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>${project.groupId}</groupId>
<artifactId>rdf4j-rio-binary</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>javax.servlet</groupId>
<artifactId>javax.servlet-api</artifactId>
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Original file line number Diff line number Diff line change
Expand Up @@ -10,7 +10,6 @@
*******************************************************************************/
package org.eclipse.rdf4j.http.server;

import java.io.StringWriter;
import java.util.HashMap;
import java.util.Map;

Expand All @@ -19,9 +18,10 @@

import org.eclipse.rdf4j.common.exception.ValidationException;
import org.eclipse.rdf4j.common.webapp.views.SimpleResponseView;
import org.eclipse.rdf4j.model.Model;
import org.eclipse.rdf4j.http.server.repository.statements.ValidationExceptionView;
import org.eclipse.rdf4j.rio.RDFFormat;
import org.eclipse.rdf4j.rio.Rio;
import org.eclipse.rdf4j.rio.RDFWriterFactory;
import org.eclipse.rdf4j.rio.RDFWriterRegistry;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import org.springframework.web.servlet.HandlerExceptionResolver;
Expand Down Expand Up @@ -72,25 +72,21 @@ public ModelAndView resolveException(HttpServletRequest request, HttpServletResp
}

if (temp instanceof ValidationException) {
// This is currently just a simple fix that causes the validation report to be printed.
// This should not be the final solution.
Model validationReportModel = ((ValidationException) temp).validationReportAsModel();

StringWriter stringWriter = new StringWriter();
model.put(SimpleResponseView.SC_KEY, HttpServletResponse.SC_CONFLICT);

// We choose RDFJSON because this format doesn't rename blank nodes.
Rio.write(validationReportModel, stringWriter, RDFFormat.RDFJSON);
ProtocolUtil.logRequestParameters(request);

statusCode = HttpServletResponse.SC_CONFLICT;
errMsg = stringWriter.toString();
RDFWriterFactory rdfWriterFactory = RDFWriterRegistry.getInstance().get(RDFFormat.BINARY).orElseThrow();

Map<String, String> headers = new HashMap<>();
headers.put("Content-Type", "application/shacl-validation-report+rdf+json");
model.put(SimpleResponseView.CUSTOM_HEADERS_KEY, headers);
}
model.put(ValidationExceptionView.FACTORY_KEY, rdfWriterFactory);
model.put(ValidationExceptionView.VALIDATION_EXCEPTION, temp);
return new ModelAndView(ValidationExceptionView.getInstance(), model);

model.put(SimpleResponseView.SC_KEY, statusCode);
model.put(SimpleResponseView.CONTENT_KEY, errMsg);
} else {
model.put(SimpleResponseView.SC_KEY, statusCode);
model.put(SimpleResponseView.CONTENT_KEY, errMsg);
}

return new ModelAndView(SimpleResponseView.getInstance(), model);
}
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Original file line number Diff line number Diff line change
@@ -0,0 +1,99 @@
/*******************************************************************************
* Copyright (c) 2015 Eclipse RDF4J contributors, Aduna, and others.
*
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the Eclipse Distribution License v1.0
* which accompanies this distribution, and is available at
* http://www.eclipse.org/org/documents/edl-v10.php.
*
* SPDX-License-Identifier: BSD-3-Clause
*******************************************************************************/
package org.eclipse.rdf4j.http.server.repository.statements;

import java.io.ByteArrayOutputStream;
import java.io.OutputStream;
import java.nio.charset.Charset;
import java.util.Map;

import javax.servlet.http.HttpServletRequest;
import javax.servlet.http.HttpServletResponse;

import org.eclipse.rdf4j.common.annotation.InternalUseOnly;
import org.eclipse.rdf4j.common.exception.ValidationException;
import org.eclipse.rdf4j.common.webapp.views.SimpleResponseView;
import org.eclipse.rdf4j.model.Model;
import org.eclipse.rdf4j.model.Namespace;
import org.eclipse.rdf4j.model.Statement;
import org.eclipse.rdf4j.rio.RDFFormat;
import org.eclipse.rdf4j.rio.RDFWriter;
import org.eclipse.rdf4j.rio.RDFWriterFactory;
import org.springframework.web.servlet.View;

/**
* View used to export a ValidationException.
*
* @author Håvard Ottestad
*/
@InternalUseOnly
public class ValidationExceptionView implements View {

public static final String FACTORY_KEY = "factory";

public static final String VALIDATION_EXCEPTION = "validationException";

private static final ValidationExceptionView INSTANCE = new ValidationExceptionView();

public static ValidationExceptionView getInstance() {
return INSTANCE;
}

private ValidationExceptionView() {
}

@Override
public String getContentType() {
return null;
}

@SuppressWarnings("rawtypes")
@Override
public void render(Map model, HttpServletRequest request, HttpServletResponse response) throws Exception {

RDFWriterFactory rdfWriterFactory = (RDFWriterFactory) model.get(FACTORY_KEY);

RDFFormat rdfFormat = rdfWriterFactory.getRDFFormat();

try (ByteArrayOutputStream baos = new ByteArrayOutputStream()) {
RDFWriter rdfWriter = rdfWriterFactory.getWriter(baos);

ValidationException validationException = (ValidationException) model.get(VALIDATION_EXCEPTION);

Model validationReportModel = validationException.validationReportAsModel();

rdfWriter.startRDF();
for (Namespace namespace : validationReportModel.getNamespaces()) {
rdfWriter.handleNamespace(namespace.getPrefix(), namespace.getName());
}
for (Statement statement : validationReportModel) {
rdfWriter.handleStatement(statement);
}
rdfWriter.endRDF();

try (OutputStream out = response.getOutputStream()) {
response.setStatus((int) model.get(SimpleResponseView.SC_KEY));

String mimeType = rdfFormat.getDefaultMIMEType();
if (rdfFormat.hasCharset()) {
Charset charset = rdfFormat.getCharset();
mimeType += "; charset=" + charset.name();
}

assert mimeType.startsWith("application/");
response.setContentType("application/shacl-validation-report+" + mimeType.replace("application/", ""));

out.write(baos.toByteArray());
}
}
}

}
Original file line number Diff line number Diff line change
Expand Up @@ -15,20 +15,30 @@

import java.io.IOException;
import java.io.StringReader;
import java.util.List;
import java.util.stream.Collectors;

import org.eclipse.rdf4j.common.exception.ValidationException;
import org.eclipse.rdf4j.http.client.shacl.RemoteShaclValidationException;
import org.eclipse.rdf4j.http.protocol.Protocol;
import org.eclipse.rdf4j.model.BNode;
import org.eclipse.rdf4j.model.Model;
import org.eclipse.rdf4j.model.Statement;
import org.eclipse.rdf4j.model.Value;
import org.eclipse.rdf4j.model.ValueFactory;
import org.eclipse.rdf4j.model.impl.SimpleValueFactory;
import org.eclipse.rdf4j.model.util.Values;
import org.eclipse.rdf4j.model.vocabulary.RDF;
import org.eclipse.rdf4j.model.vocabulary.RDF4J;
import org.eclipse.rdf4j.model.vocabulary.RDFS;
import org.eclipse.rdf4j.model.vocabulary.SHACL;
import org.eclipse.rdf4j.repository.Repository;
import org.eclipse.rdf4j.repository.RepositoryConnection;
import org.eclipse.rdf4j.repository.RepositoryException;
import org.eclipse.rdf4j.repository.http.HTTPRepository;
import org.eclipse.rdf4j.rio.RDFFormat;
import org.junit.jupiter.api.AfterAll;
import org.junit.jupiter.api.Assertions;
import org.junit.jupiter.api.BeforeAll;
import org.junit.jupiter.api.Test;

Expand Down Expand Up @@ -65,11 +75,12 @@ public static void stopServer() throws Exception {
"ex:PersonShape\n" +
"\ta sh:NodeShape ;\n" +
"\tsh:targetClass rdfs:Resource ;\n" +
"\tsh:property ex:PersonShapeProperty .\n" +
"\tsh:property _:bnode .\n" +
"\n" +
"\n" +
"ex:PersonShapeProperty\n" +
"_:bnode\n" +
" sh:path rdfs:label ;\n" +
" rdfs:label \"abc\" ;\n" +
" sh:minCount 1 .";

@Test
Expand Down Expand Up @@ -128,4 +139,54 @@ public void testAddingData() throws IOException {

}

@Test
public void testBlankNodeIdsPreserved() throws IOException {

Repository repository = new HTTPRepository(
Protocol.getRepositoryLocation(TestServer.SERVER_URL, TestServer.TEST_SHACL_REPO_ID));

try (RepositoryConnection connection = repository.getConnection()) {
connection.begin();
connection.add(new StringReader(shacl), "", RDFFormat.TURTLE, RDF4J.SHACL_SHAPE_GRAPH);
connection.commit();
}

try (RepositoryConnection connection = repository.getConnection()) {
connection.begin();
connection.add(RDFS.RESOURCE, RDF.TYPE, RDFS.RESOURCE);
connection.commit();
} catch (RepositoryException repositoryException) {

Model validationReport = ((RemoteShaclValidationException) repositoryException.getCause())
.validationReportAsModel();

BNode shapeBnode = (BNode) validationReport
.filter(null, SHACL.SOURCE_SHAPE, null)
.objects()
.stream()
.findAny()
.orElseThrow();

try (RepositoryConnection connection = repository.getConnection()) {
List<Statement> collect = connection
.getStatements(shapeBnode, null, null, RDF4J.SHACL_SHAPE_GRAPH)
.stream()
.collect(Collectors.toList());

Assertions.assertEquals(3, collect.size());

Value rdfsLabel = collect
.stream()
.filter(s -> s.getPredicate().equals(RDFS.LABEL))
.map(Statement::getObject)
.findAny()
.orElseThrow();

Assertions.assertEquals(Values.literal("abc"), rdfsLabel);

}
}

}

}

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