MAQC

Example code for the MAQC project (Quartet protein reference materials and datasets for multi-platform assessment of label-free proteomics)

load custom library

maqc_analysis_library.R

input file

profile after QC:

maqc_proteome_profile_FOT_us=1.xlsx

metadata

maqc_proteome_metadata_uniform.xlsx

All R scripts are named based on their functionality. When the aforementioned profile and metadata file are inputted, the corresponding required data frames can be extracted, and the figures in the manuscript can be generated.