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first version script upgrade db with alchemy
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Victor Reutenauer committed Feb 16, 2024
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139 changes: 139 additions & 0 deletions py/cmds/db_upg/versions/32a0ff0184b6_create_cnnfeature_table_with_pgvector.py
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"""create cnnfeature table with pgvector
Revision ID: 32a0ff0184b6
Revises: 1b1beb672279
Create Date: 2024-02-16 10:18:55.661964
"""

# revision identifiers, used by Alembic.
revision = '32a0ff0184b6'
down_revision = '1b1beb672279'

from alembic import op
import sqlalchemy as sa
from sqlalchemy.dialects import postgresql

def upgrade():
# ### commands auto generated by Alembic - please adjust! ###
op.drop_table('dbplyr_004')
op.drop_table('dbplyr_006')
op.drop_table('obj_cnn_features')

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@grololo06

grololo06 Feb 16, 2024

Member

Alembic vire cette table mais ne voit pas la nouvelle, donc on se retrouve sans aucune des 2 à la fin de l'upgrade :(
op.drop_table('dbplyr_007')
op.drop_table('dbplyr_001')
op.drop_table('dbplyr_003')
op.drop_table('dbplyr_005')
op.drop_table('dbplyr_002')
op.create_foreign_key(None, 'obj_cnn_features_vector', 'obj_head', ['objcnnid'], ['objid'], ondelete='CASCADE')

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@grololo06

grololo06 Feb 16, 2024

Member

Il l'a bien vue en fait, mais il ne la recrée pas, il faut lancer l'outil à partir d'une DB ayant la même structure que la prod'. Galère.
op.alter_column('user_password_reset', 'creation_date',
existing_type=postgresql.TIMESTAMP(),
nullable=True,
existing_server_default=sa.text('CURRENT_TIMESTAMP'))
op.drop_constraint('user_password_reset_user_id_fkey', 'user_password_reset', type_='foreignkey')
op.create_foreign_key(None, 'user_password_reset', 'users', ['user_id'], ['id'])
# ### end Alembic commands ###


def downgrade():
# ### commands auto generated by Alembic - please adjust! ###
op.drop_constraint(None, 'user_password_reset', type_='foreignkey')
op.create_foreign_key('user_password_reset_user_id_fkey', 'user_password_reset', 'users', ['user_id'], ['id'], ondelete='CASCADE')
op.alter_column('user_password_reset', 'creation_date',
existing_type=postgresql.TIMESTAMP(),
nullable=False,
existing_server_default=sa.text('CURRENT_TIMESTAMP'))
op.drop_constraint(None, 'obj_cnn_features_vector', type_='foreignkey')
op.create_table('dbplyr_002',
sa.Column('psampleid', postgresql.DOUBLE_PRECISION(precision=53), autoincrement=False, nullable=True),
sa.Column('sampleid', postgresql.DOUBLE_PRECISION(precision=53), autoincrement=False, nullable=True)
)
op.create_table('dbplyr_005',
sa.Column('pprojid', postgresql.DOUBLE_PRECISION(precision=53), autoincrement=False, nullable=True),
sa.Column('project', sa.TEXT(), autoincrement=False, nullable=True),
sa.Column('project_short', sa.TEXT(), autoincrement=False, nullable=True),
sa.Column('use', postgresql.DOUBLE_PRECISION(precision=53), autoincrement=False, nullable=True)
)
op.create_table('dbplyr_003',
sa.Column('pprojid', postgresql.DOUBLE_PRECISION(precision=53), autoincrement=False, nullable=True),
sa.Column('project', sa.TEXT(), autoincrement=False, nullable=True),
sa.Column('project_short', sa.TEXT(), autoincrement=False, nullable=True),
sa.Column('use', postgresql.DOUBLE_PRECISION(precision=53), autoincrement=False, nullable=True)
)
op.create_table('dbplyr_001',
sa.Column('psampleid', postgresql.DOUBLE_PRECISION(precision=53), autoincrement=False, nullable=True),
sa.Column('sampleid', postgresql.DOUBLE_PRECISION(precision=53), autoincrement=False, nullable=True)
)
op.create_table('dbplyr_007',
sa.Column('pprojid', postgresql.DOUBLE_PRECISION(precision=53), autoincrement=False, nullable=True),
sa.Column('project', sa.TEXT(), autoincrement=False, nullable=True),
sa.Column('project_short', sa.TEXT(), autoincrement=False, nullable=True),
sa.Column('use', postgresql.DOUBLE_PRECISION(precision=53), autoincrement=False, nullable=True)
)
op.create_table('obj_cnn_features',
sa.Column('objcnnid', sa.BIGINT(), autoincrement=False, nullable=False),
sa.Column('cnn01', sa.REAL(), autoincrement=False, nullable=True),
sa.Column('cnn02', sa.REAL(), autoincrement=False, nullable=True),
sa.Column('cnn03', sa.REAL(), autoincrement=False, nullable=True),
sa.Column('cnn04', sa.REAL(), autoincrement=False, nullable=True),
sa.Column('cnn05', sa.REAL(), autoincrement=False, nullable=True),
sa.Column('cnn06', sa.REAL(), autoincrement=False, nullable=True),
sa.Column('cnn07', sa.REAL(), autoincrement=False, nullable=True),
sa.Column('cnn08', sa.REAL(), autoincrement=False, nullable=True),
sa.Column('cnn09', sa.REAL(), autoincrement=False, nullable=True),
sa.Column('cnn10', sa.REAL(), autoincrement=False, nullable=True),
sa.Column('cnn11', sa.REAL(), autoincrement=False, nullable=True),
sa.Column('cnn12', sa.REAL(), autoincrement=False, nullable=True),
sa.Column('cnn13', sa.REAL(), autoincrement=False, nullable=True),
sa.Column('cnn14', sa.REAL(), autoincrement=False, nullable=True),
sa.Column('cnn15', sa.REAL(), autoincrement=False, nullable=True),
sa.Column('cnn16', sa.REAL(), autoincrement=False, nullable=True),
sa.Column('cnn17', sa.REAL(), autoincrement=False, nullable=True),
sa.Column('cnn18', sa.REAL(), autoincrement=False, nullable=True),
sa.Column('cnn19', sa.REAL(), autoincrement=False, nullable=True),
sa.Column('cnn20', sa.REAL(), autoincrement=False, nullable=True),
sa.Column('cnn21', sa.REAL(), autoincrement=False, nullable=True),
sa.Column('cnn22', sa.REAL(), autoincrement=False, nullable=True),
sa.Column('cnn23', sa.REAL(), autoincrement=False, nullable=True),
sa.Column('cnn24', sa.REAL(), autoincrement=False, nullable=True),
sa.Column('cnn25', sa.REAL(), autoincrement=False, nullable=True),
sa.Column('cnn26', sa.REAL(), autoincrement=False, nullable=True),
sa.Column('cnn27', sa.REAL(), autoincrement=False, nullable=True),
sa.Column('cnn28', sa.REAL(), autoincrement=False, nullable=True),
sa.Column('cnn29', sa.REAL(), autoincrement=False, nullable=True),
sa.Column('cnn30', sa.REAL(), autoincrement=False, nullable=True),
sa.Column('cnn31', sa.REAL(), autoincrement=False, nullable=True),
sa.Column('cnn32', sa.REAL(), autoincrement=False, nullable=True),
sa.Column('cnn33', sa.REAL(), autoincrement=False, nullable=True),
sa.Column('cnn34', sa.REAL(), autoincrement=False, nullable=True),
sa.Column('cnn35', sa.REAL(), autoincrement=False, nullable=True),
sa.Column('cnn36', sa.REAL(), autoincrement=False, nullable=True),
sa.Column('cnn37', sa.REAL(), autoincrement=False, nullable=True),
sa.Column('cnn38', sa.REAL(), autoincrement=False, nullable=True),
sa.Column('cnn39', sa.REAL(), autoincrement=False, nullable=True),
sa.Column('cnn40', sa.REAL(), autoincrement=False, nullable=True),
sa.Column('cnn41', sa.REAL(), autoincrement=False, nullable=True),
sa.Column('cnn42', sa.REAL(), autoincrement=False, nullable=True),
sa.Column('cnn43', sa.REAL(), autoincrement=False, nullable=True),
sa.Column('cnn44', sa.REAL(), autoincrement=False, nullable=True),
sa.Column('cnn45', sa.REAL(), autoincrement=False, nullable=True),
sa.Column('cnn46', sa.REAL(), autoincrement=False, nullable=True),
sa.Column('cnn47', sa.REAL(), autoincrement=False, nullable=True),
sa.Column('cnn48', sa.REAL(), autoincrement=False, nullable=True),
sa.Column('cnn49', sa.REAL(), autoincrement=False, nullable=True),
sa.Column('cnn50', sa.REAL(), autoincrement=False, nullable=True),
sa.ForeignKeyConstraint(['objcnnid'], ['obj_head.objid'], name='obj_cnn_features_objcnnid_fkey', ondelete='CASCADE'),
sa.PrimaryKeyConstraint('objcnnid', name='obj_cnn_features_pkey')
)
op.create_table('dbplyr_006',
sa.Column('pprojid', postgresql.DOUBLE_PRECISION(precision=53), autoincrement=False, nullable=True),
sa.Column('project', sa.TEXT(), autoincrement=False, nullable=True),
sa.Column('project_short', sa.TEXT(), autoincrement=False, nullable=True),
sa.Column('use', postgresql.DOUBLE_PRECISION(precision=53), autoincrement=False, nullable=True)
)
op.create_table('dbplyr_004',
sa.Column('pprojid', postgresql.DOUBLE_PRECISION(precision=53), autoincrement=False, nullable=True),
sa.Column('project', sa.TEXT(), autoincrement=False, nullable=True),
sa.Column('project_short', sa.TEXT(), autoincrement=False, nullable=True),
sa.Column('use', postgresql.DOUBLE_PRECISION(precision=53), autoincrement=False, nullable=True)
)
# ### end Alembic commands ###

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