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Doubt about command-line wrapper function padeldescriptor #30

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denisnpg opened this issue Aug 5, 2021 · 1 comment
Closed

Doubt about command-line wrapper function padeldescriptor #30

denisnpg opened this issue Aug 5, 2021 · 1 comment

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@denisnpg
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denisnpg commented Aug 5, 2021

Hi! I'm kinda new in the programming world and I have a doubt about how to use the command-line wrapper function.

So I have a .txt with a bunch of SMILES and I want to calculate their 2D descriptors, so how should I use the padeldescriptor function so I only calculate the 2D? Because by default I get all 1875 descriptors.

I wrote something like this:

image

Thanks!

@denisnpg
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denisnpg commented Aug 5, 2021

I was reading the closed issues and found the answer here Can not apply with .smi file (~4000 cps) #25

Finally I wrote

padeldescriptor(mol_dir= 'smiles.smi', d_file='descriptors.csv', d_2d=True, d_3d=False, retainorder=True)

smiles.smi it's a file with all the smiles

and it worked

@denisnpg denisnpg closed this as completed Aug 5, 2021
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