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No option to output flat alleles #5

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edawson opened this issue Mar 23, 2017 · 0 comments
Open

No option to output flat alleles #5

edawson opened this issue Mar 23, 2017 · 0 comments

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@edawson
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edawson commented Mar 23, 2017

svaha doesn't support flat alleles, which we use for variant recall in vg right now. It would be nice to have it as an option, even if the new SnarlTraversal-based variant pipeline should remove our dependencies on nice, flat alleles.
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@edawson