PRAD-compartments

Analysis scripts to accompany Simmons et al 2017 manuscript 'Integrating chromatin compartment maps with genome-wide transcription factor binding profiles and gene expression data identifies transcriptional drivers of prostate carcinogenesis'

Contents:

1. R script to generate PRAD compartments and identify TFs with enriched binding in aberrantly-compartmentalized regions
2. List of required data files and download instructions
3. Text files and objects to facilitate analysis