refactor: Make a Nextflow module

edmundmiller · Dec 18, 2023 · b5ba019 · b5ba019
1 parent bbd75fc
commit b5ba019
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Showing 4 changed files with 26 additions and 17 deletions.
diff --git a/hosts/framework/default.nix b/hosts/framework/default.nix
@@ -55,8 +55,8 @@
     };
     dev = {
       cc.enable = true;
-      java.enable = true;
       julia.enable = true;
+      nextflow.enable = true;
       nixlang.enable = true;
       node.enable = true;
       node.enableGlobally = true;

diff --git a/hosts/meshify/default.nix b/hosts/meshify/default.nix
@@ -51,8 +51,8 @@
     };
     dev = {
       cc.enable = true;
-      java.enable = true;
       julia.enable = true;
+      nextflow.enable = true;
       nixlang.enable = true;
       node.enable = true;
       node.enableGlobally = true;

diff --git a/modules/dev/java.nix b/modules/dev/java.nix
diff --git a/modules/dev/nextflow.nix b/modules/dev/nextflow.nix
@@ -0,0 +1,24 @@
+{
+  config,
+  options,
+  lib,
+  pkgs,
+  ...
+}:
+with lib;
+with lib.my; let
+  cfg = config.modules.dev.nextflow;
+in {
+  options.modules.dev.nextflow = {enable = mkBoolOpt false;};
+
+  config = mkIf cfg.enable {
+    user.packages = with pkgs; [
+      jdk17
+      my.nf-core
+    ];
+
+    environment.shellAliases = {
+      nf = "nextflow";
+    };
+  };
+}