This repository contains the research compendium for the project: Growth and survival of enrichment planted tree seedlings in old-growth and selectively logged lowland dipterocarp rainforest.
The code/ directory contains these subdirectories:
notebooks/ contains Quarto files that are used for exploratory analysis. They produce figures and documents.
scripts/ contains action scripts, i.e. all the code for cleaning, combining, and analysing the data. All paths in the scripts are relative to the root directory (where the .Rproj file lives). Each .R script has a summary at the top of what it does. The scripts are numbered in the order in which they would typically be run.
The original data is stored in the data/raw/ subdirectory. Any data that is produced using code is stored in data/derived/. Data will be archived separately.
The output/ directory contains the subdirectories figures/ and results/, which contain the figures used in the paper and other output from analyses, respectively.
The docs/ directory contains the data dictionary (i.e. metadata), protocols and any other relevant documents.
To reproduce results and figures run the .R scripts in code/scripts/ in the order in which they are labelled.