Rd0004

composite island

Location

sequence            start    end      direction
TY-2482_chromosome  3114088  3163067  1
scaffold00002       109755   158805   -1

flu = Fluffing protein = Antigen 43 (AG43) = AidA-I like protein

• 5'-part highly similar to Tn21 element (ROD66) in E.coli strain 041 (O44:H18). ChaudhuriRR-SebaihiaM-2010
• 5'-part habours an amazing ensemble of antibiotic resistence gene
• 3'-part containing flu and yafZ/yeeVW gene cluster similar to Escherichia coli strain BEN2908 (CU928162.2)
• 3'-part containing flu and yafZ/yeeVW gene cluster is integreted into tRNAserX in UTI89 (CP000243.1)

Pathogenicity island EPI-I A selC-associated genomic island of the extraintestinal avian pathogenic Escherichia coli strain BEN2908 is involved in carbohydrate uptake and virulence. ChouikhaI-GermonP-2006, AY857617.1

pathogenicity island PAI-I GQ497943.1

Attachment site

between tRNAselC and setC

List of genes

	unigene	description	pubmed	size	sequence position
<—	D8CB43	Conserved domain protein		354	TY-2482_chromosome[3114181:3114534:r]
—>		ref|NC_010473|:3931829-3931923|Sec tRNA| [gene=selC] [locus_tag=ECDH10B_3840]		95	TY-2482_chromosome[3114380:3114474]
—>	B5YWF9	Integrase		1260	TY-2482_chromosome[3114696:3115955]
—>	Q7CGU0	Integrase (Putative phage integrase)	12142430;11586360;15368893	1203	TY-2482_chromosome[3114774:3115976]
<—	E1U309	Transposase InsAB'	20856797	695	TY-2482_chromosome[3116080:3116774:r]
<—	Q32IP8	IS1 ORF1	16275786	302	TY-2482_chromosome[3116502:3116803:r]
<—	Q4MUS7	Transposase (Transposase X)	15155910	2994	TY-2482_chromosome[3116967:3119960:r]
<—	D3H359	Transposon Tn21 resolvase	20098708	558	TY-2482_chromosome[3119936:3120493:r]
<—	C7S9T2	Transposon Tn21 modulator protein		612	TY-2482_chromosome[3120622:3121233:r]
<—	D3H361	Integrase	20098708	1011	TY-2482_chromosome[3121175:3122185:r]
—>	C9WXE6	Streptothricin acetyltransferase		216	TY-2482_chromosome[3122115:3122330]
—>	C7S9T5	Dihydrofolate reductase type VII		672	TY-2482_chromosome[3122142:3122813]
—>	B8X162	Dihydrofolate reductase-like protein		659	TY-2482_chromosome[3122268:3122926]
—>	Q3I3P0	ORF3-QacEdelta1 fusion protein	16436750	381	TY-2482_chromosome[3123010:3123390]
—>	A0SY34	Dihydropteroate synthase (Fragment)		201	TY-2482_chromosome[3123300:3123500]
—>	D3H364	Dihydropteroate synthase type-1 (EC 2.5.1.15)	20098708	777	TY-2482_chromosome[3123387:3124163]
<—	Q7AQT7	Putative transposase	11677608	702	TY-2482_chromosome[3124203:3124904:r]
—>	Q19NI7	Putative transposase	16940062	666	TY-2482_chromosome[3124377:3125042]
<—	C8UQP4	Conserved predicted protein	19815525	399	TY-2482_chromosome[3124954:3125352:r]
<—	C8UQP5	TEM-1 beta-lactamase	19815525	327	TY-2482_chromosome[3125505:3125831:r]
—>	P03853	Uncharacterized 9.2 kDa protein	383387;6337373	204	TY-2482_chromosome[3125632:3125835]
—>	C8UQP5	TEM-1 beta-lactamase	19815525	255	TY-2482_chromosome[3125826:3126080]
—>	C8UQP4	Conserved predicted protein	19815525	399	TY-2482_chromosome[3126233:3126631]
<—	Q19NI7	Putative transposase	16940062	666	TY-2482_chromosome[3126543:3127208:r]
—>	Q7AQT7	Putative transposase	11677608	702	TY-2482_chromosome[3126681:3127382]
—>	P20356	Regulatory protein repA	2653965	717	TY-2482_chromosome[3127435:3128151]
—>	E3PYS5	Replication protein C		948	TY-2482_chromosome[3128042:3128989]
—>	E6B917	Replication protein C		966	TY-2482_chromosome[3128144:3129109]
—>	C8UQP1	Sulfonamide-resistant dihydropteroate synthase	19815525	813	TY-2482_chromosome[3129300:3130112]
<—	B7JCH5	Putative uncharacterized protein	20160015	267	TY-2482_chromosome[3130115:3130381:r]
—>	A8SPZ5	StrA	18039823	930	TY-2482_chromosome[3130176:3131105]
—>	C8UQN9	Streptomycin phosphotransferase	19815525	843	TY-2482_chromosome[3130970:3131812]
<—	Q7AQT7	Putative transposase	11677608	702	TY-2482_chromosome[3131879:3132580:r]
—>	Q935I2	Putative transposase	11677608	618	TY-2482_chromosome[3132053:3132670]
<—	D3H369	Putative transposase	20098708	1302	TY-2482_chromosome[3132630:3133931:r]
<—	Q5J458	Urf2	15781495	882	TY-2482_chromosome[3133973:3134854:r]
<—	Q7AQT2	Putative uncharacterized protein HCM1.229c	11677608	234	TY-2482_chromosome[3134677:3134910:r]
<—	D3H372	MerR-family transcriptional regulator	20098708	360	TY-2482_chromosome[3134910:3135269:r]
<—	Q935L3	Putative mercuric reductase (EC 1.16.1.1)	11677608	1692	TY-2482_chromosome[3135290:3136981:r]
<—	Q0ZKU6	Mercuric resistance protein MerC (Mercury resistance operon transport protein MerC) (Putative uncharacterized protein)	16820486;20160015	459	TY-2482_chromosome[3137036:3137494:r]
<—	D3H375	Mercuric ion transport protein	20098708	273	TY-2482_chromosome[3137494:3137766:r]
<—	C8UQM9	Mercuric ion transport protein MerT	19815525	348	TY-2482_chromosome[3137783:3138130:r]
<—	Q50918	Mercury resistance (mer) operon	6530603	360	TY-2482_chromosome[3138196:3138555:r]
—>	C8UQM8	Mercuric resistance operon regulatory protein MerR	19815525	432	TY-2482_chromosome[3138202:3138633]
<—	P11901	Transposase for insertion sequence element IS421	2542093	1110	TY-2482_chromosome[3139007:3140116:r]
<—	D3H379	Putative uncharacterized protein	20098708	333	TY-2482_chromosome[3140579:3140911:r]
—>	E5FD82	Relaxase (Fragment)		264	TY-2482_chromosome[3140964:3141227]
<—	D3H381	Tetracycline repressor	20098708	648	TY-2482_chromosome[3141265:3141912:r]
—>	D3H382	Tetracycline resistance protein	20098708	1197	TY-2482_chromosome[3142018:3143214]
<—	Q6SJ76	PecM (PecM-like protein) (Protein pecM)	15388431;20160015	909	TY-2482_chromosome[3143252:3144160:r]
<—	D3H369	Putative transposase	20098708	741	TY-2482_chromosome[3144097:3144837:r]
<—	B7LG76	Putative uncharacterized protein	19165319	268	TY-2482_chromosome[3145351:3145618:r]
<—	Q5I3K5	Aec60	16428402	384	TY-2482_chromosome[3145557:3145940:r]
<—	D2NGS8	Putative uncharacterized protein	20008064	567	TY-2482_chromosome[3146106:3146672:r]
<—	Q0TDJ8	Putative hemolysin expression modulating protein	16879640	290	TY-2482_chromosome[3147419:3147708:r]
—>	B7LDW1	Putative uncharacterized protein	19165319	399	TY-2482_chromosome[3148140:3148538]
—>	E8J5T9	Putative transcriptional regulator		296	TY-2482_chromosome[3148335:3148630]
—>	C8TTS1	Conserved predicted protein	19815525	755	TY-2482_chromosome[3148481:3149235]
—>	E9YZX6	IstB ATP binding protein		346	TY-2482_chromosome[3149872:3150217]
—>	C8TWJ4	Putative uncharacterized protein	19815525	870	TY-2482_chromosome[3151826:3152695]
—>	C8TV65	Putative uncharacterized protein	19815525	972	TY-2482_chromosome[3152695:3153666]
<—	E9TXK9	Conserved domain protein (Fragment)		384	TY-2482_chromosome[3153436:3153819:r]
—>	E7HRI2	Antigen 43 (Fragment)		400	TY-2482_chromosome[3153873:3154272]
—>	C8TNL5	Putative AidA-I adhesin-like protein	19815525	2955	TY-2482_chromosome[3153931:3156885]
—>	B3Y1R9	Predicted protein	18757547	192	TY-2482_chromosome[3156923:3157114]
—>	C8TWJ8	Putative uncharacterized protein	19815525	816	TY-2482_chromosome[3157272:3158087]
<—	Q1RDE0	Putative uncharacterized protein	16585510	852	TY-2482_chromosome[3157281:3158132:r]
<—	Q1RA72	Putative uncharacterized protein	16585510	48	TY-2482_chromosome[3158212:3158259:r]
—>	Q5K5L7	Putative uncharacterized protein	11682182;12635929	540	TY-2482_chromosome[3158360:3158899]
<—	Q5K5L6	Putative uncharacterized protein	11682182;12635929	957	TY-2482_chromosome[3158426:3159382:r]
—>	D3GUT2	Putative DNA repair protein (Putative RadC-like DNA repair protein)	20098708	489	TY-2482_chromosome[3158903:3159391]
—>	E7H850	DNA repair RadC family protein		758	TY-2482_chromosome[3158918:3159675]
<—	Q6KD12	Putative uncharacterized protein	15292145	327	TY-2482_chromosome[3159394:3159720:r]
—>	D3GX48	Putative uncharacterized protein	20098708	483	TY-2482_chromosome[3159733:3160215]
—>	E9TQB2	Conserved domain protein (Fragment)		174	TY-2482_chromosome[3160092:3160265]
—>	B7MN77	Toxin of the YeeV-YeeU toxin-antitoxin system	19165319	489	TY-2482_chromosome[3160151:3160639]
—>	B7LBT9	Putative uncharacterized protein yeeW	19165319	486	TY-2482_chromosome[3160639:3161124]
—>	Q9X5P0	Putative uncharacterized protein	10094710	372	TY-2482_chromosome[3160970:3161341]
—>	D8A1P1	Putative uncharacterized protein (Fragment)		489	TY-2482_chromosome[3161360:3161848]
—>	B7MSL6	Putative uncharacterized protein	19165319	843	TY-2482_chromosome[3161429:3162271]

This list was extracted from [Era7_EHEC_BGI_V4_Annotation.txt](/ehec-outbreak-crowdsourced/BGI-data-analysis/strains/TY2482/seqProject/BGI/annotations/era7bioinformatics/era7_BGI_V4_annotation/Era7_EHEC_BGI_V4_Annotation.txt) using [rod2html.py](/ehec-outbreak-crowdsourced/BGI-data-analysis/strains/comparativeAnalysis/Regions-of-difference/rod2html.py). Sequence positions are formatted as Emboss Universal Sequence Addresses.