MolecularLogicMouseNeoCortex

Single Cell Processed Data

The processed single cell RNA data from E10-E18, P1 and P4 from Di Bella & Habibi, et al. can be downloaded from the Broad Single-cell Portal (https://singlecell.broadinstitute.org/single_cell/study/SCP1290/molecular-logic-of-cellular-diversification-in-the-mammalian-cerebral-cortex).

Determining Tips and Root cells to build up the RNA tree

URD reqires to define the 'root' cells (the base of the specification tree), from the first developmental stage and the 'tips' (i.e. the terminal populations) of the tree. You can load these cells as follow:

load("root_and_tips.obj")