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[ML] Data frame analytics data counts (#53998)
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This commit instruments data frame analytics
with stats for the data that are being analyzed.
In particular, we count training docs, test docs,
and skipped docs.

In order to account docs with missing values as skipped
docs for analyses that do not support missing values,
this commit changes the extractor so that it only ignores
docs with missing values when it collects the data summary,
which is used to estimate memory usage.
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dimitris-athanasiou committed Mar 23, 2020
1 parent 0a35f39 commit 39785eb
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Showing 28 changed files with 744 additions and 123 deletions.
Original file line number Diff line number Diff line change
Expand Up @@ -21,6 +21,7 @@

import org.elasticsearch.client.ml.NodeAttributes;
import org.elasticsearch.client.ml.dataframe.stats.AnalysisStats;
import org.elasticsearch.client.ml.dataframe.stats.common.DataCounts;
import org.elasticsearch.client.ml.dataframe.stats.common.MemoryUsage;
import org.elasticsearch.common.Nullable;
import org.elasticsearch.common.ParseField;
Expand All @@ -47,6 +48,7 @@ public static DataFrameAnalyticsStats fromXContent(XContentParser parser) throws
static final ParseField STATE = new ParseField("state");
static final ParseField FAILURE_REASON = new ParseField("failure_reason");
static final ParseField PROGRESS = new ParseField("progress");
static final ParseField DATA_COUNTS = new ParseField("data_counts");
static final ParseField MEMORY_USAGE = new ParseField("memory_usage");
static final ParseField ANALYSIS_STATS = new ParseField("analysis_stats");
static final ParseField NODE = new ParseField("node");
Expand All @@ -60,10 +62,11 @@ public static DataFrameAnalyticsStats fromXContent(XContentParser parser) throws
(DataFrameAnalyticsState) args[1],
(String) args[2],
(List<PhaseProgress>) args[3],
(MemoryUsage) args[4],
(AnalysisStats) args[5],
(NodeAttributes) args[6],
(String) args[7]));
(DataCounts) args[4],
(MemoryUsage) args[5],
(AnalysisStats) args[6],
(NodeAttributes) args[7],
(String) args[8]));

static {
PARSER.declareString(constructorArg(), ID);
Expand All @@ -75,6 +78,7 @@ public static DataFrameAnalyticsStats fromXContent(XContentParser parser) throws
}, STATE, ObjectParser.ValueType.STRING);
PARSER.declareString(optionalConstructorArg(), FAILURE_REASON);
PARSER.declareObjectArray(optionalConstructorArg(), PhaseProgress.PARSER, PROGRESS);
PARSER.declareObject(optionalConstructorArg(), DataCounts.PARSER, DATA_COUNTS);
PARSER.declareObject(optionalConstructorArg(), MemoryUsage.PARSER, MEMORY_USAGE);
PARSER.declareObject(optionalConstructorArg(), (p, c) -> parseAnalysisStats(p), ANALYSIS_STATS);
PARSER.declareObject(optionalConstructorArg(), NodeAttributes.PARSER, NODE);
Expand All @@ -93,19 +97,21 @@ private static AnalysisStats parseAnalysisStats(XContentParser parser) throws IO
private final DataFrameAnalyticsState state;
private final String failureReason;
private final List<PhaseProgress> progress;
private final DataCounts dataCounts;
private final MemoryUsage memoryUsage;
private final AnalysisStats analysisStats;
private final NodeAttributes node;
private final String assignmentExplanation;

public DataFrameAnalyticsStats(String id, DataFrameAnalyticsState state, @Nullable String failureReason,
@Nullable List<PhaseProgress> progress, @Nullable MemoryUsage memoryUsage,
@Nullable AnalysisStats analysisStats, @Nullable NodeAttributes node,
@Nullable List<PhaseProgress> progress, @Nullable DataCounts dataCounts,
@Nullable MemoryUsage memoryUsage, @Nullable AnalysisStats analysisStats, @Nullable NodeAttributes node,
@Nullable String assignmentExplanation) {
this.id = id;
this.state = state;
this.failureReason = failureReason;
this.progress = progress;
this.dataCounts = dataCounts;
this.memoryUsage = memoryUsage;
this.analysisStats = analysisStats;
this.node = node;
Expand All @@ -128,6 +134,11 @@ public List<PhaseProgress> getProgress() {
return progress;
}

@Nullable
public DataCounts getDataCounts() {
return dataCounts;
}

@Nullable
public MemoryUsage getMemoryUsage() {
return memoryUsage;
Expand Down Expand Up @@ -156,6 +167,7 @@ public boolean equals(Object o) {
&& Objects.equals(state, other.state)
&& Objects.equals(failureReason, other.failureReason)
&& Objects.equals(progress, other.progress)
&& Objects.equals(dataCounts, other.dataCounts)
&& Objects.equals(memoryUsage, other.memoryUsage)
&& Objects.equals(analysisStats, other.analysisStats)
&& Objects.equals(node, other.node)
Expand All @@ -164,7 +176,7 @@ public boolean equals(Object o) {

@Override
public int hashCode() {
return Objects.hash(id, state, failureReason, progress, memoryUsage, analysisStats, node, assignmentExplanation);
return Objects.hash(id, state, failureReason, progress, dataCounts, memoryUsage, analysisStats, node, assignmentExplanation);
}

@Override
Expand All @@ -174,6 +186,7 @@ public String toString() {
.add("state", state)
.add("failureReason", failureReason)
.add("progress", progress)
.add("dataCounts", dataCounts)
.add("memoryUsage", memoryUsage)
.add("analysisStats", analysisStats)
.add("node", node)
Expand Down
Original file line number Diff line number Diff line change
@@ -0,0 +1,119 @@
/*
* Licensed to Elasticsearch under one or more contributor
* license agreements. See the NOTICE file distributed with
* this work for additional information regarding copyright
* ownership. Elasticsearch licenses this file to you under
* the Apache License, Version 2.0 (the "License"); you may
* not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing,
* software distributed under the License is distributed on an
* "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
* KIND, either express or implied. See the License for the
* specific language governing permissions and limitations
* under the License.
*/

package org.elasticsearch.client.ml.dataframe.stats.common;

import org.elasticsearch.common.Nullable;
import org.elasticsearch.common.ParseField;
import org.elasticsearch.common.inject.internal.ToStringBuilder;
import org.elasticsearch.common.xcontent.ConstructingObjectParser;
import org.elasticsearch.common.xcontent.ToXContentObject;
import org.elasticsearch.common.xcontent.XContentBuilder;

import java.io.IOException;
import java.util.Objects;

import static org.elasticsearch.common.xcontent.ConstructingObjectParser.optionalConstructorArg;

public class DataCounts implements ToXContentObject {

public static final String TYPE_VALUE = "analytics_data_counts";

public static final ParseField TRAINING_DOCS_COUNT = new ParseField("training_docs_count");
public static final ParseField TEST_DOCS_COUNT = new ParseField("test_docs_count");
public static final ParseField SKIPPED_DOCS_COUNT = new ParseField("skipped_docs_count");

public static final ConstructingObjectParser<DataCounts, Void> PARSER = new ConstructingObjectParser<>(TYPE_VALUE, true,
a -> {
Long trainingDocsCount = (Long) a[0];
Long testDocsCount = (Long) a[1];
Long skippedDocsCount = (Long) a[2];
return new DataCounts(
getOrDefault(trainingDocsCount, 0L),
getOrDefault(testDocsCount, 0L),
getOrDefault(skippedDocsCount, 0L)
);
});

static {
PARSER.declareLong(optionalConstructorArg(), TRAINING_DOCS_COUNT);
PARSER.declareLong(optionalConstructorArg(), TEST_DOCS_COUNT);
PARSER.declareLong(optionalConstructorArg(), SKIPPED_DOCS_COUNT);
}

private final long trainingDocsCount;
private final long testDocsCount;
private final long skippedDocsCount;

public DataCounts(long trainingDocsCount, long testDocsCount, long skippedDocsCount) {
this.trainingDocsCount = trainingDocsCount;
this.testDocsCount = testDocsCount;
this.skippedDocsCount = skippedDocsCount;
}

@Override
public XContentBuilder toXContent(XContentBuilder builder, Params params) throws IOException {
builder.startObject();
builder.field(TRAINING_DOCS_COUNT.getPreferredName(), trainingDocsCount);
builder.field(TEST_DOCS_COUNT.getPreferredName(), testDocsCount);
builder.field(SKIPPED_DOCS_COUNT.getPreferredName(), skippedDocsCount);
builder.endObject();
return builder;
}

@Override
public boolean equals(Object o) {
if (this == o) return true;
if (o == null || getClass() != o.getClass()) return false;
DataCounts that = (DataCounts) o;
return trainingDocsCount == that.trainingDocsCount
&& testDocsCount == that.testDocsCount
&& skippedDocsCount == that.skippedDocsCount;
}

@Override
public int hashCode() {
return Objects.hash(trainingDocsCount, testDocsCount, skippedDocsCount);
}

@Override
public String toString() {
return new ToStringBuilder(getClass())
.add(TRAINING_DOCS_COUNT.getPreferredName(), trainingDocsCount)
.add(TEST_DOCS_COUNT.getPreferredName(), testDocsCount)
.add(SKIPPED_DOCS_COUNT.getPreferredName(), skippedDocsCount)
.toString();
}

public long getTrainingDocsCount() {
return trainingDocsCount;
}

public long getTestDocsCount() {
return testDocsCount;
}

public long getSkippedDocsCount() {
return skippedDocsCount;
}

private static <T> T getOrDefault(@Nullable T value, T defaultValue) {
return value != null ? value : defaultValue;
}
}
Original file line number Diff line number Diff line change
Expand Up @@ -23,6 +23,7 @@
import org.elasticsearch.client.ml.dataframe.stats.AnalysisStats;
import org.elasticsearch.client.ml.dataframe.stats.AnalysisStatsNamedXContentProvider;
import org.elasticsearch.client.ml.dataframe.stats.classification.ClassificationStatsTests;
import org.elasticsearch.client.ml.dataframe.stats.common.DataCountsTests;
import org.elasticsearch.client.ml.dataframe.stats.common.MemoryUsageTests;
import org.elasticsearch.client.ml.dataframe.stats.outlierdetection.OutlierDetectionStatsTests;
import org.elasticsearch.client.ml.dataframe.stats.regression.RegressionStatsTests;
Expand Down Expand Up @@ -68,6 +69,7 @@ public static DataFrameAnalyticsStats randomDataFrameAnalyticsStats() {
randomFrom(DataFrameAnalyticsState.values()),
randomBoolean() ? null : randomAlphaOfLength(10),
randomBoolean() ? null : createRandomProgress(),
randomBoolean() ? null : DataCountsTests.createRandom(),
randomBoolean() ? null : MemoryUsageTests.createRandom(),
analysisStats,
randomBoolean() ? null : NodeAttributesTests.createRandom(),
Expand All @@ -93,6 +95,9 @@ public static void toXContent(DataFrameAnalyticsStats stats, XContentBuilder bui
if (stats.getProgress() != null) {
builder.field(DataFrameAnalyticsStats.PROGRESS.getPreferredName(), stats.getProgress());
}
if (stats.getDataCounts() != null) {
builder.field(DataFrameAnalyticsStats.DATA_COUNTS.getPreferredName(), stats.getDataCounts());
}
if (stats.getMemoryUsage() != null) {
builder.field(DataFrameAnalyticsStats.MEMORY_USAGE.getPreferredName(), stats.getMemoryUsage());
}
Expand Down
Original file line number Diff line number Diff line change
@@ -0,0 +1,51 @@
/*
* Licensed to Elasticsearch under one or more contributor
* license agreements. See the NOTICE file distributed with
* this work for additional information regarding copyright
* ownership. Elasticsearch licenses this file to you under
* the Apache License, Version 2.0 (the "License"); you may
* not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing,
* software distributed under the License is distributed on an
* "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
* KIND, either express or implied. See the License for the
* specific language governing permissions and limitations
* under the License.
*/

package org.elasticsearch.client.ml.dataframe.stats.common;

import org.elasticsearch.common.xcontent.XContentParser;
import org.elasticsearch.test.AbstractXContentTestCase;

import java.io.IOException;

public class DataCountsTests extends AbstractXContentTestCase<DataCounts> {

@Override
protected DataCounts createTestInstance() {
return createRandom();
}

public static DataCounts createRandom() {
return new DataCounts(
randomNonNegativeLong(),
randomNonNegativeLong(),
randomNonNegativeLong()
);
}

@Override
protected DataCounts doParseInstance(XContentParser parser) throws IOException {
return DataCounts.PARSER.apply(parser, null);
}

@Override
protected boolean supportsUnknownFields() {
return true;
}
}
Original file line number Diff line number Diff line change
Expand Up @@ -29,6 +29,7 @@
import org.elasticsearch.xpack.core.ml.dataframe.DataFrameAnalyticsConfig;
import org.elasticsearch.xpack.core.ml.dataframe.DataFrameAnalyticsState;
import org.elasticsearch.xpack.core.ml.dataframe.stats.AnalysisStats;
import org.elasticsearch.xpack.core.ml.dataframe.stats.common.DataCounts;
import org.elasticsearch.xpack.core.ml.dataframe.stats.MemoryUsage;
import org.elasticsearch.xpack.core.ml.utils.ExceptionsHelper;
import org.elasticsearch.xpack.core.ml.utils.PhaseProgress;
Expand Down Expand Up @@ -165,6 +166,9 @@ public static class Stats implements ToXContentObject, Writeable {
*/
private final List<PhaseProgress> progress;

@Nullable
private final DataCounts dataCounts;

@Nullable
private final MemoryUsage memoryUsage;

Expand All @@ -177,12 +181,13 @@ public static class Stats implements ToXContentObject, Writeable {
private final String assignmentExplanation;

public Stats(String id, DataFrameAnalyticsState state, @Nullable String failureReason, List<PhaseProgress> progress,
@Nullable MemoryUsage memoryUsage, @Nullable AnalysisStats analysisStats, @Nullable DiscoveryNode node,
@Nullable String assignmentExplanation) {
@Nullable DataCounts dataCounts, @Nullable MemoryUsage memoryUsage, @Nullable AnalysisStats analysisStats,
@Nullable DiscoveryNode node, @Nullable String assignmentExplanation) {
this.id = Objects.requireNonNull(id);
this.state = Objects.requireNonNull(state);
this.failureReason = failureReason;
this.progress = Objects.requireNonNull(progress);
this.dataCounts = dataCounts;
this.memoryUsage = memoryUsage;
this.analysisStats = analysisStats;
this.node = node;
Expand All @@ -198,6 +203,11 @@ public Stats(StreamInput in) throws IOException {
} else {
progress = in.readList(PhaseProgress::new);
}
if (in.getVersion().onOrAfter(Version.V_8_0_0)) {
dataCounts = in.readOptionalWriteable(DataCounts::new);
} else {
dataCounts = null;
}
if (in.getVersion().onOrAfter(Version.V_7_7_0)) {
memoryUsage = in.readOptionalWriteable(MemoryUsage::new);
} else {
Expand Down Expand Up @@ -261,6 +271,11 @@ public List<PhaseProgress> getProgress() {
return progress;
}

@Nullable
public DataCounts getDataCounts() {
return dataCounts;
}

@Nullable
public MemoryUsage getMemoryUsage() {
return memoryUsage;
Expand Down Expand Up @@ -293,6 +308,9 @@ public XContentBuilder toUnwrappedXContent(XContentBuilder builder) throws IOExc
if (progress != null) {
builder.field("progress", progress);
}
if (dataCounts != null) {
builder.field("data_counts", dataCounts);
}
if (memoryUsage != null) {
builder.field("memory_usage", memoryUsage);
}
Expand Down Expand Up @@ -331,6 +349,9 @@ public void writeTo(StreamOutput out) throws IOException {
} else {
out.writeList(progress);
}
if (out.getVersion().onOrAfter(Version.V_8_0_0)) {
out.writeOptionalWriteable(dataCounts);
}
if (out.getVersion().onOrAfter(Version.V_7_7_0)) {
out.writeOptionalWriteable(memoryUsage);
}
Expand Down Expand Up @@ -369,7 +390,8 @@ private void writeProgressToLegacy(StreamOutput out) throws IOException {

@Override
public int hashCode() {
return Objects.hash(id, state, failureReason, progress, memoryUsage, analysisStats, node, assignmentExplanation);
return Objects.hash(id, state, failureReason, progress, dataCounts, memoryUsage, analysisStats, node,
assignmentExplanation);
}

@Override
Expand All @@ -385,6 +407,7 @@ public boolean equals(Object obj) {
&& Objects.equals(this.state, other.state)
&& Objects.equals(this.failureReason, other.failureReason)
&& Objects.equals(this.progress, other.progress)
&& Objects.equals(this.dataCounts, other.dataCounts)
&& Objects.equals(this.memoryUsage, other.memoryUsage)
&& Objects.equals(this.analysisStats, other.analysisStats)
&& Objects.equals(this.node, other.node)
Expand Down
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