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👋 Hi,

I am a neuroscientist currently trying to discover more about neurodegeneration and neuroinflammation. I regularly write code for data analysis for my experiments.

  • For microscopy image processing and analysis I use MATLAB and the Java-based image analysis software, ImageJ.
  • For bioinformatics analysis (data from RNA sequencing) I use R, and data processing toolkits run via the Linux and Windows command lines.

My older repositories include code I wrote for practice when learning programming. My newer repositories include code I wrote for my own data analysis at work.

Check out my website/blog:

🔭 I’m currently working on:

  • Writing code for analysing microscopy images, and for visualising RNA-seq data.

🌱 I’m currently learning:

  • Object oriented programming
  • How to create graphical user interfaces in MATLAB
  • How to apply machine learning methods for data classification and prediction
  • Methods for signal frequency analysis

📫 How to reach me:


  1. Morphometric analysis of neuromuscular junction microscopy images, and protein distribution and localisation analysis of immunohistochemically-labelled microscopy images.


  2. Morphometric analysis of cells in microscopy images.


  3. Various functions to inspect, extract, and visualise long-read RNA-seq data.

    MATLAB 1

  4. cyclotron Public

    Returns the energy of a positively charged isotope of hydrogen when it escapes a particle accelerator, and the number of times the isotope enters two vacuum chambers, after a voltage is applied to it.


  5. minesweeper Public

    Minesweeper game in Windows command line.


  6. This function performs gradient ascent, a first-order iterative optimisation algorithm for finding the maximum of a function. This algorithm uses a complex function.


105 contributions in the last year

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