JV_Edit_FBA_Analysis.ipynb

{
 "cells": [
  {
   "cell_type": "code",
   "execution_count": 1,
   "metadata": {},
   "outputs": [],
   "source": [
    "import cobra\n",
    "from cobra.medium import minimal_medium\n",
    "from cobra.flux_analysis import (\n",
    "    single_gene_deletion, single_reaction_deletion, double_gene_deletion,\n",
    "    double_reaction_deletion)\n",
    "\n",
    "import numpy as np\n",
    "import pandas as pd"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 2,
   "metadata": {},
   "outputs": [],
   "source": [
    "def set_minimal_media(model,ions=[],auto_ions=True,ignore =[]):\n",
    "    ''' set media to minimal (M9) FBA (no carbon source) by default it provides a predeterimined set of ions (\n",
    "    auto_ions =True), you can specificy which metaoblites not to change for example if you have calibrated the \n",
    "    vmaxes or want anaerobic conditions'''\n",
    "    if auto_ions == True:\n",
    "        ions = ions + ['ca2_e', 'cl_e','cobalt2_e','cu2_e','fe2_e','fe3_e','h_e','h2o_e','k_e','mg2_e','mn2_e',\n",
    "                       'mobd_e','na1_e','nh4_e','ni2_e',\n",
    "                            'o2_e','pi_e','so4_e','zn2_e',\n",
    "                            'tungs_e','sel_e','slnt_e','cbl1_e']\n",
    "    exch = [x for x in model.reactions  if len(x.metabolites) == 1 and next(iter(x.metabolites.values())) == -1 and next(iter(x.metabolites.keys())).compartment == 'e']\n",
    "    #If compartments are not asigned to the model \n",
    "    if len(exch) ==0:\n",
    "        exch = [x for x in model.reactions  if len(x.metabolites) == 1 and next(iter(x.metabolites.values())) == -1 and next(iter(x.metabolites.keys())).id[-2:] == '_e']\n",
    "\n",
    "    # .. media\n",
    "    for l in exch:\n",
    "        if next(iter(l.metabolites.keys())).id in ions:\n",
    "            model.reactions.get_by_id(l.id).lower_bound = -1000\n",
    "        elif next(iter(l.metabolites.keys())).id not in ignore:\n",
    "            model.reactions.get_by_id(l.id).lower_bound = -0\n",
    "        else:\n",
    "            pass"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "### The Old version  -ion limited"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 3,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Academic license - for non-commercial use only\n",
      "{'EX_ca2_e': 0.005113800273256573, 'EX_cl_e': 0.005113800273256573, 'EX_cobalt2_e': 2.4561960966650205e-05, 'EX_cu2_e': 0.0006965772130141999, 'EX_fe2_e': 0.015779586203414755, 'EX_glc__D_e': 1.0, 'EX_k_e': 0.19177291387853412, 'EX_mg2_e': 0.00852300045542762, 'EX_mn2_e': 0.0006788926011182116, 'EX_mobd_e': 0.00012673971858791504, 'EX_nh4_e': 10.61157669982634, 'EX_ni2_e': 0.0003173405356891206, 'EX_o2_e': 17.57432917782036, 'EX_pi_e': 0.9477291587675234, 'EX_so4_e': 0.24779088701595373, 'EX_zn2_e': 0.00033502514758510876}\n"
     ]
    }
   ],
   "source": [
    "'''load the base model for REL606.'''\n",
    "base_model = cobra.io.read_sbml_model('iECB_1328.xml.gz')\n",
    "max_growth = base_model.slim_optimize()\n",
    "base_model.medium = minimal_medium(base_model,max_growth)\n",
    "\n",
    "''' set glucose to 1.0. This is to set relative molarity of citrate and glucose in the media properly,\n",
    "so that growth yields of Cit- on DM25 and Cit+ on DM0 and DM25 are \"apples to apples\". '''\n",
    "citminus_medium = base_model.medium\n",
    "citminus_medium['EX_glc__D_e'] = 1.0\n",
    "base_model.medium = citminus_medium\n",
    "print(base_model.medium)"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "### The New version  -ions unlimited"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 29,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "{'EX_ca2_e': 1000, 'EX_cbl1_e': 1000, 'EX_cl_e': 1000, 'EX_cobalt2_e': 1000, 'EX_cu2_e': 1000, 'EX_fe2_e': 1000, 'EX_fe3_e': 1000, 'EX_glc__D_e': 1.0, 'EX_h_e': 1000, 'EX_h2o_e': 1000, 'EX_k_e': 1000, 'EX_mg2_e': 1000, 'EX_mn2_e': 1000, 'EX_mobd_e': 1000, 'EX_na1_e': 1000, 'EX_nh4_e': 1000, 'EX_ni2_e': 1000, 'EX_o2_e': 1000, 'EX_pi_e': 1000, 'EX_sel_e': 1000, 'EX_slnt_e': 1000, 'EX_so4_e': 1000, 'EX_tungs_e': 1000, 'EX_zn2_e': 1000}\n"
     ]
    }
   ],
   "source": [
    "'''load the base model for REL606.'''\n",
    "base_model = cobra.io.read_sbml_model('iECB_1328.xml.gz')\n",
    "base_model.reactions.ATPM.lower_bound = 0.0\n",
    "set_minimal_media(base_model)\n",
    "''' set glucose to 1.0. This is to set relative molarity of citrate and glucose in the media properly,\n",
    "so that growth yields of Cit- on DM25 and Cit+ on DM0 and DM25 are \"apples to apples\". '''\n",
    "citminus_medium = base_model.medium\n",
    "citminus_medium['EX_glc__D_e'] = 1.0\n",
    "base_model.medium = citminus_medium\n",
    "print(base_model.medium)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 30,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Read LP format model from file /tmp/tmpuzfxpu92.lp\n",
      "Reading time = 0.01 seconds\n",
      ": 1951 rows, 5496 columns, 21258 nonzeros\n"
     ]
    },
    {
     "data": {
      "text/plain": [
       "'oaa_c --> co2_e + pyr_c'"
      ]
     },
     "execution_count": 30,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "''' add this reaction to maeA: nad[c] + oaa[c] ->pyr[c] + nadh[c].\n",
    "    This reaction is the difference between base_model and maeA_model.'''\n",
    "\n",
    "maeA_side_reaction = cobra.Reaction('MAEA')\n",
    "maeA_side_reaction.name = 'maeA_side_rxn '\n",
    "maeA_side_reaction.subsystem = 'Anaplerotic Reactions'\n",
    "maeA_side_reaction.lower_bound = 0.  # This is the default\n",
    "maeA_side_reaction.upper_bound = 1000.  # This is the default\n",
    "\n",
    "maeA_model = base_model.copy()\n",
    "maeA_model.add_reaction(maeA_side_reaction)\n",
    "\n",
    "''' \n",
    "cite: \n",
    "https://www.uniprot.org/uniprot/C3TAB2\n",
    "https://en.wikipedia.org/wiki/Malate_dehydrogenase_(oxaloacetate-decarboxylating)\n",
    "https://enzyme.expasy.org/EC/1.1.1.38\n",
    "'''\n",
    "\n",
    "maeA_side_reaction.add_metabolites({\n",
    "    'oaa_c': -1.0,\n",
    "    'pyr_c': 1.0,\n",
    "    'co2_e': 1.0,\n",
    "})\n",
    "\n",
    "maeA_side_reaction.reaction"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 31,
   "metadata": {},
   "outputs": [
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Model does not contain SBML fbc package information.\n",
      "SBML package 'layout' not supported by cobrapy, information is not parsed\n",
      "SBML package 'render' not supported by cobrapy, information is not parsed\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00060_c0 \"L_Methionine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00067_c0 \"H_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00001_c0 \"H2O_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00035_c0 \"L_Alanine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11590_c0 \"met_L_ala_L_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00161_c0 \"L_Threonine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11582_c0 \"ala_L_Thr_L_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11589_c0 \"gly_asp_L_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00041_c0 \"L_Aspartate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00033_c0 \"Glycine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00084_c0 \"L_Cysteine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15603_c0 \"Gly_Cys_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00023_c0 \"L_Glutamate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11586_c0 \"ala_L_glu_L_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00132_c0 \"L_Asparagine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11581_c0 \"gly_asn_L_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15604_c0 \"Gly_Leu_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00107_c0 \"L_Leucine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11585_c0 \"L_alanylglycine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11593_c0 \"ala_L_asp_L_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01017_c0 \"Cys_Gly_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00053_c0 \"L_Glutamine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11580_c0 \"Gly_Gln_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00066_c0 \"L_Phenylalanine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15605_c0 \"Gly_Phe_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00119_c0 \"L_Histidine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11584_c0 \"Ala_His_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11592_c0 \"gly_glu_L_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11587_c0 \"Ala_Gln_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00069_c0 \"L_Tyrosine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15606_c0 \"Gly_Tyr_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11588_c0 \"gly_pro_L_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00129_c0 \"L_Proline_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11583_c0 \"Ala_Leu_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11591_c0 \"Gly_Met_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00357_c0 \"TTP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00626_c0 \"dTDPglucose_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00089_c0 \"Glucose_1_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00012_c0 \"PPi_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00650_c0 \"Crotonyl_CoA_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00004_c0 \"NADH_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00003_c0 \"NAD_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00120_c0 \"Butyryl_CoA_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02187_c0 \"Methacrylyl_CoA_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00481_c0 \"Isobutyryl_CoA_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00007_c0 \"O2_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00760_c0 \"2_Methylbutyryl_CoA_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02125_c0 \"Tiglyl_CoA_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03671_c0 \"D_Glucosamine1_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02611_c0 \"N_Acetyl_D_glucosamine1_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00010_c0 \"CoA_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00022_c0 \"Acetyl_CoA_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00037_c0 \"UDP_N_acetylglucosamine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00062_c0 \"UTP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02152_c0 \"L_Argininosuccinate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00106_c0 \"Fumarate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00051_c0 \"L_Arginine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02255_c0 \"3_oxoadipate_enol_lactone_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00011_c0 \"CO2_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00938_c0 \"4_Carboxymuconolactone_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15352_c0 \"2_Demethylmenaquinone_8_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15353_c0 \"2_Demethylmenaquinol_8_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15561_c0 \"Ubiquinol_8_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15560_c0 \"Ubiquinone_8_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15500_c0 \"Menaquinone_8_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15499_c0 \"Menaquinol_8_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15672_c0 \"1_anteisoheptadecanoyl_sn_glycerol_3_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11434_c0 \"fa12coa_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15678_c0 \"1_2_dianteisoheptadecanoyl_sn_glycerol_3_phosphate_c0\">\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15682_c0 \"1_2_diisohexadecanoyl_sn_glycerol_3_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15676_c0 \"1_isohexadecanoyl_sn_glycerol_3_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11441_c0 \"fa6coa_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11493_c0 \"ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15328_c0 \"1_octadec_11_enoyl_sn_glycerol_3_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15527_c0 \"1_2_dioctadec_11_enoyl_sn_glycerol_3_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11825_c0 \"Octadecenoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15331_c0 \"1_tetradecanoyl_sn_glycerol_3_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15522_c0 \"1_2_ditetradecanoyl_sn_glycerol_3_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01695_c0 \"Myristoyl_CoA_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15521_c0 \"1_2_didodecanoyl_sn_glycerol_3_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15325_c0 \"1_dodecanoyl_sn_glycerol_3_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11468_c0 \"Dodecanoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15677_c0 \"1_2_diisoheptadecanoyl_sn_glycerol_3_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11432_c0 \"fa11coa_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15671_c0 \"1_isoheptadecanoyl_sn_glycerol_3_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00134_c0 \"Palmitoyl_CoA_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15327_c0 \"1_hexadecanoyl_sn_glycerol_3_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15524_c0 \"1_2_dihexadecanoyl_sn_glycerol_3_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15681_c0 \"1_2_dianteisopentadecanoyl_sn_glycerol_3_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11439_c0 \"fa4coa_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15675_c0 \"1_anteisopentadecanoyl_sn_glycerol_3_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15277_c0 \"Palmitoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15680_c0 \"1_2_diisopentadecanoyl_sn_glycerol_3_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15674_c0 \"1_isopentadecanoyl_sn_glycerol_3_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11437_c0 \"fa3coa_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15239_c0 \"Hexadecenoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15326_c0 \"1_hexadec_9_enoyl_sn_glycerol_3_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15525_c0 \"1_2_dihexadec_9_enoyl_sn_glycerol_3_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15268_c0 \"Octadecanoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15329_c0 \"1_octadecanoyl_sn_glycerol_3_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15526_c0 \"1_2_dioctadecanoyl_sn_glycerol_3_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15294_c0 \"Tetradecenoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15330_c0 \"1_tetradec_7_enoyl_sn_glycerol_3_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15523_c0 \"1_2_ditetradec_7_enoyl_sn_glycerol_3_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15673_c0 \"1_isotetradecanoyl_sn_glycerol_3_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15679_c0 \"1_2_diisotetradecanoyl_sn_glycerol_3_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11435_c0 \"fa1coa_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11466_c0 \"Myristoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00327_c0 \"strcoa_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00002_c0 \"ATP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00259_c0 \"D_Lyxulose_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00198_c0 \"D_Xylulose5_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00008_c0 \"ADP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00067_e0 \"H_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00609_c0 \"D_Glucarate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00609_e0 \"D_Glucarate_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00652_c0 \"D_Mucic_acid_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00652_e0 \"D_Mucic_acid_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00080_c0 \"Glycerol_3_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00091_c0 \"UMP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00249_c0 \"Uridine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00533_c0 \"dCDP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00356_c0 \"dCTP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00367_c0 \"Cytidine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00038_c0 \"GTP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00046_c0 \"CMP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00031_c0 \"GDP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00241_c0 \"dGTP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00295_c0 \"dGDP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00358_c0 \"dUTP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00978_c0 \"dUDP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00297_c0 \"dTDP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00068_c0 \"ITP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00090_c0 \"IDP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00014_c0 \"UDP_c0\">\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00177_c0 \"dADP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00115_c0 \"dATP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15492_c0 \"kdo_phospho_heptosyl_phospho_heptosyl_heptosyl_kdo2_lipidA_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15550_c0 \"phospho_heptosyl_phospho_heptosyl_heptosyl_kdo2_lipidA_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02546_c0 \"CMP_KDO_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00196_c0 \"Acetylphosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00029_c0 \"Acetate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01844_c0 \"Propionyl_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00141_c0 \"Propionate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00071_c0 \"Acetaldehyde_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00041_e0 \"L_Aspartate_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00036_c0 \"Succinate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00036_e0 \"Succinate_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00098_c0 \"Choline_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00447_c0 \"Betaine_aldehyde_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00009_c0 \"Phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11590_e0 \"met_L_ala_L_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11583_e0 \"Ala_Leu_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15603_e0 \"Gly_Cys_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15606_e0 \"Gly_Tyr_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01017_e0 \"Cys_Gly_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11586_e0 \"ala_L_glu_L_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11589_e0 \"gly_asp_L_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11584_e0 \"Ala_His_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15604_e0 \"Gly_Leu_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11593_e0 \"ala_L_asp_L_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11587_e0 \"Ala_Gln_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11592_e0 \"gly_glu_L_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11580_e0 \"Gly_Gln_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11581_e0 \"gly_asn_L_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11585_e0 \"L_alanylglycine_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11591_e0 \"Gly_Met_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15605_e0 \"Gly_Phe_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11582_e0 \"ala_L_Thr_L_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11588_e0 \"gly_pro_L_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03525_c0 \"N_Succinyl_L_glutamate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03526_c0 \"N_Succinyl_L_glutamate_5_semialdehyde_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01399_c0 \"Maltotetraose_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15495_c0 \"Maltopentaose_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01329_c0 \"Maltohexaose_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15494_c0 \"Maltoheptaose_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15302_c0 \"glycogenn_1_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15302_b \"glycogenn_1_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00155_c0 \"Glycogen_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11484_c0 \"HMA_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02886_c0 \"UDP_3_O_beta_hydroxymyristoyl_N_acetylglucosamine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00006_c0 \"NADP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03187_c0 \"Oxalosuccinate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00260_c0 \"Isocitrate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00005_c0 \"NADPH_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00024_c0 \"2_Oxoglutarate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00215_c0 \"Pyridoxal_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00016_c0 \"Pyridoxal_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00419_c0 \"PM_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00493_c0 \"Pyridoxamine_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00263_c0 \"Pyridoxol_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00478_c0 \"Pyridoxine_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02612_c0 \"N_Acetylmannosamine_6_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00293_c0 \"N_Acetyl_D_glucosamine_6_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00156_c0 \"L_Valine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00156_e0 \"L_Valine_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00322_c0 \"L_Isoleucine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00322_e0 \"L_Isoleucine_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00107_e0 \"L_Leucine_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02597_c0 \"cis_2_Methylaconitate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02799_c0 \"Methylisocitrate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00441_c0 \"CH33N_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00811_c0 \"CH33NO_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00450_c0 \"Methyl_sulfide_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd08021_c0 \"DMSO_c0\">\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01242_c0 \"Thyminose_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01242_e0 \"Thyminose_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00105_c0 \"D_Ribose_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00105_e0 \"D_Ribose_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11473_c0 \"2E_Hexenoyl_acp_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11479_c0 \"D_3_Hydroxyhexanoyl_acp_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11467_c0 \"2E_Tetradecenoyl_acp_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11483_c0 \"R_3_Hydroxyoctanoyl_acyl_carrier_protein_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11471_c0 \"2E_Octenoyl_acp_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11478_c0 \"R_3_Hydroxybutanoyl_acyl_carrier_protein_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11465_c0 \"But_2_enoyl_acyl_carrier_protein_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11475_c0 \"2E_Decenoyl_acp_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11482_c0 \"R_3_Hydroxydecanoyl_acyl_carrier_protein_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11481_c0 \"R_3_hydroxypalmitoyl_acyl_carrierprotein__c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11477_c0 \"2E_Hexadecenoyl_acp_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11469_c0 \"2E_Dodecenoyl_acp_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11480_c0 \"D_3_Hydroxydodecanoyl_acp_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11552_c0 \"6_methyl_trans_hept_2_enoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11551_c0 \"6_methyl_3_hydroxy_heptanoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11518_c0 \"14_methyl_trans_hexa_dec_2_enoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11517_c0 \"14_methyl_3_hydroxy_hexa_decanoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11522_c0 \"5_methyl_3_hydroxy_hexanoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11523_c0 \"5_methyl_trans_hex_2_enoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11563_c0 \"12_methyl_3_hydroxy_tridecanoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11564_c0 \"12_methyl_trans_tridec_2_enoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11568_c0 \"14_methyl_trans_pentadec_2_enoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11567_c0 \"14_methyl_3_hydroxy_pentadecanoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11509_c0 \"10_methyl_3_hydroxy_dodecanoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11510_c0 \"10_methyl_trans_dodec_2_enoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11513_c0 \"12_methyl_3_hydroxy_tetra_decanoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11514_c0 \"12_methyl_trans_tetra_dec_2_enoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11534_c0 \"11_methyl_3_hydroxy_dodecanoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11535_c0 \"11_methyl_trans_dodec_2_enoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11556_c0 \"8_methyl_trans_non_2_enoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11555_c0 \"8_methyl_3_hydroxy_nonanoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11538_c0 \"13_methyl_3_hydroxy_tetra_decanoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11539_c0 \"13_methyl_trans_tetra_dec_2_enoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11506_c0 \"8_methyl_trans_dec_2_enoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11505_c0 \"8_methyl_3_hydroxy_decanoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11498_c0 \"4_methyl_trans_hex_2_enoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11497_c0 \"4_methyl_3_hydroxy_hexanoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11530_c0 \"9_methyl_3_hydroxy_decanoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11531_c0 \"9_methyl_trans_dec_2_enoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11542_c0 \"15_methyl_3_hydroxy_hexa_decanoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11543_c0 \"15_methyl_trans_hexa_dec_2_enoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11501_c0 \"6_methyl_3_hydroxy_octanoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11502_c0 \"6_methyl_trans_oct_2_enoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11527_c0 \"7_methyl_trans_oct_2_enoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11526_c0 \"7_methyl_3_hydroxy_octanoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11560_c0 \"10_methyl_trans_undec_2_enoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11559_c0 \"10_methyl_3_hydroxy_undecanoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11572_c0 \"trans_Octodec_2_enoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11571_c0 \"3_Hydroxyoctodecanoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11548_c0 \"4_methyl_trans_pent_2_enoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11547_c0 \"4_methyl_3_hydroxy_pentanoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd08301_c0 \"2_C_methyl_D_erythritol2_4_cyclodiphosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd08288_c0 \"2_phospho_4__cytidine5_diphospho_2_C_methyl_D_erythritol_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03761_c0 \"Precorrin_6A_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03760_c0 \"Precorrin_6B_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd08372_c0 \"Cobalt_precorrin_6_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd08373_c0 \"Cobalt_precorrin_6B_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15441_c0 \"crotonobetainyl_CoA_c0\">\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15440_c0 \"Carnitinyl_CoA_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00254_e0 \"Mg_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00254_c0 \"Mg_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00149_e0 \"Co2_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00149_c0 \"Co2_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd09818_c0 \"Naphthyl_2_methyl_succinic_acid_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00078_c0 \"Succinyl_CoA_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd09819_c0 \"Naphthyl_2_methyl_succinyl_CoA_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00142_c0 \"Acetoacetate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00279_c0 \"Acetoacetyl_CoA_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00211_c0 \"Butyrate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00027_c0 \"D_Glucose_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00208_c0 \"LACT_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00108_c0 \"Galactose_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00842_c0 \"S_3_Hydroxybutyryl_CoA_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02234_c0 \"R_3_Hydroxybutanoyl_CoA_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00179_c0 \"Maltose_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00794_c0 \"TRHL_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00015_c0 \"FAD_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00982_c0 \"FADH2_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd09878_c0 \"Sulfoacetate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00040_c0 \"Glyoxalate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01270_c0 \"FMNH2_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00081_c0 \"Sulfite_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00050_c0 \"FMN_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00210_c0 \"Taurine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd04122_c0 \"Aminoacetaldehyde_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03048_c0 \"Isethionate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00229_c0 \"Glycolaldehyde_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15611_c0 \"hexanal_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11578_c0 \"hexanesulfonate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00055_c0 \"Formaldehyde_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd08023_c0 \"methanesulfonate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11579_c0 \"ethanesulfonate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11596_c0 \"butanesulfonate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01011_c0 \"Butanal_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02857_c0 \"DAHP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00699_c0 \"5_Dehydroquinate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11545_c0 \"isobutyryl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11476_c0 \"hexadecanoyl_acp_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11540_c0 \"13_methyl_tetra_decanoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11492_c0 \"Malonyl_acyl_carrierprotein__c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00070_c0 \"Malonyl_CoA_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11519_c0 \"14_methyl_hexa_decanoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11573_c0 \"Octodecanoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01882_c0 \"Isovaleryl_CoA_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11520_c0 \"isovaleryl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11569_c0 \"14_methyl_pentadecanoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11565_c0 \"12_methyl_tridecanoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11515_c0 \"12_methyl_tetra_decanoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11495_c0 \"2_methylbutyryl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11544_c0 \"15_methyl_hexa_decanoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00641_c0 \"L_Histidinol_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00807_c0 \"L_histidinol_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11576_c0 \"L_methionine_R_oxide_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11576_e0 \"L_methionine_R_oxide_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00060_e0 \"L_Methionine_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01914_c0 \"L_Methionine_S_oxide_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01914_e0 \"L_Methionine_S_oxide_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00637_c0 \"D_Methionine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00637_e0 \"D_Methionine_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02555_c0 \"Tetrahydropteroyltri_L_glutamate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00135_c0 \"Homocysteine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02738_c0 \"5_Methyltetrahydropteroyltri_L_glutamate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00019_c0 \"S_Adenosyl_homocysteine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00017_c0 \"S_Adenosyl_L_methionine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00098_e0 \"Choline_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00121_c0 \"L_Inositol_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02484_c0 \"Inositol_3_phosphate_c0\">\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02230_c0 \"Inositol_4_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00867_c0 \"Inositol_1_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00130_c0 \"L_Malate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00032_c0 \"Oxaloacetate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00346_c0 \"L_Aspartate4_semialdehyde_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00227_c0 \"L_Homoserine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11558_c0 \"10_methyl_3_oxo_undecanoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11508_c0 \"10_methyl_3_oxo_dodecanoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11490_c0 \"3_oxooctanoyl_acp_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11512_c0 \"12_methyl_3_oxo_tetra_decanoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11491_c0 \"3_oxotetradecanoyl_acp_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11486_c0 \"3_Oxohexanoyl_acp_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11521_c0 \"5_methyl_3_oxo_hexanoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11533_c0 \"11_methyl_3_oxo_dodecanoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11489_c0 \"3_oxododecanoyl_acp_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11570_c0 \"3_Oxooctodecanoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11504_c0 \"8_methyl_3_oxo_decanoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11554_c0 \"8_methyl_3_oxo_nonanoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11529_c0 \"9_methyl_3_oxo_decanoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11485_c0 \"3_oxohexadecanoyl_acp_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11562_c0 \"12_methyl_3_oxo_tridecanoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11500_c0 \"6_methyl_3_oxo_octanoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11566_c0 \"14_methyl_3_oxo_pentadecanoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11546_c0 \"4_methyl_3_oxo_pentanoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11488_c0 \"Acetoacetyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11537_c0 \"13_methyl_3_oxo_tetra_decanoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11487_c0 \"3_oxodecanoyl_acp_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11496_c0 \"4_methyl_3_oxo_hexanoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11550_c0 \"6_methyl_3_oxo_heptanoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11541_c0 \"15_methyl_3_oxo_hexa_decanoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11525_c0 \"7_methyl_3_oxo_octanoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11516_c0 \"14_methyl_3_oxo_hexa_decanoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11561_c0 \"10_methyl_undecanoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11464_c0 \"Butyryl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11503_c0 \"6_methyl_octanoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11511_c0 \"10_methyl_dodecanoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11528_c0 \"7_methyl_octanoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11499_c0 \"4_methyl_hexanoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11470_c0 \"Octanoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11532_c0 \"9_methyl_decanoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11549_c0 \"4_methyl_pentanoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11553_c0 \"6_methyl_heptanoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11507_c0 \"8_methyl_decanoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11472_c0 \"Hexanoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11524_c0 \"5_methyl_hexanoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11536_c0 \"11_methyl_dodecanoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11557_c0 \"8_methyl_nonanoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11474_c0 \"Decanoyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02656_c0 \"6_7_Dimethyl_8__1_D_ribityllumazine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02882_c0 \"4__1_D_Ribitylamino_5_aminouracil_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00220_c0 \"Riboflavin_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd14955_c0 \"Lipoyl_AMP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00541_c0 \"Lipoate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02964_c0 \"UDP_N_acetylmuramoyl_L_alanyl_D_gamma_glutamyl_meso_2_6_diaminopimelate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00731_c0 \"Ala_Ala_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02968_c0 \"UDP_N_acetylmuramoyl_L_alanyl_D_glutamyl_6_carboxy_L_lysyl_D_alanyl__D_alanine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00971_c0 \"Na_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00971_e0 \"Na_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00023_e0 \"L_Glutamate_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02893_c0 \"5_Phosphoribosyl_4_carboxy_5_aminoimidazole_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02140_c0 \"AIR_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00242_c0 \"H2CO3_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00790_c0 \"O_Acetyl_L_homoserine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00424_c0 \"Cystathionine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00013_c0 \"NH3_c0\">\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00822_c0 \"O_Succinyl_L_homoserine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00094_c0 \"2_Oxobutyrate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00396_c0 \"L_Rhamnose_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00396_e0 \"L_Rhamnose_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00840_c0 \"L_beta_Lysine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00039_c0 \"L_Lysine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15538_c0 \"Phosphatidylglycerol_dihexadecanoyl_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15545_c0 \"Phosphatidylglycerophosphate_dihexadecanoyl_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15723_c0 \"Dianteisoheptadecanoylphosphatidylglycerol_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15717_c0 \"Dianteisoheptadecanoylphosphatidylglycerophosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15544_c0 \"Phosphatidylglycerophosphate_ditetradec_7_enoyl_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15537_c0 \"Phosphatidylglycerol_ditetradec_7_enoyl_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15548_c0 \"Phosphatidylglycerophosphate_dioctadec_11_enoyl_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15541_c0 \"Phosphatidylglycerol_dioctadec_11_enoyl_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15539_c0 \"Phosphatidylglycerol_dihexadec_9_enoyl_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15546_c0 \"Phosphatidylglycerophosphate_dihexadec_9_enoyl_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15726_c0 \"Dianteisopentadecanoylphosphatidylglycerol_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15720_c0 \"Dianteisopentadecanoylphosphatidylglycerophosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15724_c0 \"Diisotetradecanoylphosphatidylglycerol_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15718_c0 \"Diisotetradecanoylphosphatidylglycerophosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15542_c0 \"Phosphatidylglycerophosphate_didodecanoyl_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15535_c0 \"Phosphatidylglycerol_didodecanoyl_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15719_c0 \"Diisopentadecanoylphosphatidylglycerophosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15725_c0 \"Diisopentadecanoylphosphatidylglycerol_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15716_c0 \"Diisoheptadecanoylphosphatidylglycerophosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15722_c0 \"Diisoheptadecanoylphosphatidylglycerol_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15543_c0 \"Phosphatidylglycerophosphate_ditetradecanoyl_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15536_c0 \"Phosphatidylglycerol_ditetradecanoyl_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15540_c0 \"Phosphatidylglycerol_dioctadecanoyl_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15547_c0 \"Phosphatidylglycerophosphate_dioctadecanoyl_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15727_c0 \"Diisohexadecanoylphosphatidylglycerol_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15721_c0 \"Diisohexadecanoylphosphatidylglycerophosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd14960_c0 \"Cobalt_precorrin_5B_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd08371_c0 \"Cobalt_precorrin_5_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00268_c0 \"H2S2O3_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01211_c0 \"Thiocyanate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00150_c0 \"HCN_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03917_c0 \"Adenosylcobyric_acid_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03918_c0 \"Adenosyl_cobinamide_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02039_c0 \"1_Aminopropan_2_ol_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03919_c0 \"Adenosyl_cobinamide_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02547_c0 \"R_1_Aminopropan_2_yl_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15309_c0 \"1_2_Diacyl_sn_glycerol_dihexadecanoyl_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15306_c0 \"1_2_Diacyl_sn_glycerol_didodecanoyl_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15703_c0 \"1_2_Diisotetradecanoyl_sn_glycerol_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15310_c0 \"1_2_Diacyl_sn_glycerol_dihexadec_9_enoyl_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15704_c0 \"1_2_Diisopentadecanoyl_sn_glycerol_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15312_c0 \"1_2_Diacyl_sn_glycerol_dioctadec_11_enoyl_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15307_c0 \"1_2_Diacyl_sn_glycerol_ditetradecanoyl_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15311_c0 \"1_2_Diacyl_sn_glycerol_dioctadecanoyl_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15308_c0 \"1_2_Diacyl_sn_glycerol_ditetradec_7_enoyl_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15701_c0 \"1_2_Diisoheptadecanoyl_sn_glycerol_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15706_c0 \"1_2_Diisohexadecanoyl_sn_glycerol_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15705_c0 \"1_2_Dianteisopentadecanoyl_sn_glycerol_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15702_c0 \"1_2_Dianteisoheptadecanoyl_sn_glycerol_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00123_c0 \"3_Methyl_2_oxobutanoate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01646_c0 \"2_Isopropylmalate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02431_c0 \"1_Pyrroline_5_carboxylate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00858_c0 \"L_Glutamate5_semialdehyde_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00900_c0 \"GDP_4_dehydro_D_rhamnose_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00272_c0 \"GDP_L_fucose_c0\">\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00470_c0 \"N1_Acetylspermidine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00264_c0 \"Spermidine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00758_c0 \"N8_Acetylspermidine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03424_c0 \"Vitamin_B12_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03424_e0 \"Vitamin_B12_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00423_c0 \"Vitamin_B12r_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00423_e0 \"Vitamin_B12r_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15693_c0 \"Dianteisopentadecanoylphosphatidylserine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00054_c0 \"L_Serine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15687_c0 \"CDP_1_2_dianteisopentadecanoylglycerol_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15555_c0 \"phosphatidylserine_dihexadecanoyl_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15419_c0 \"CDP_1_2_dihexadecanoylglycerol_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15554_c0 \"phosphatidylserine_ditetradec_7_enoyl_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15422_c0 \"CDP_1_2_ditetradec_7_enoylglycerol_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15421_c0 \"CDP_1_2_dioctadecanoylglycerol_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15557_c0 \"phosphatidylserine_dioctadecanoyl_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15692_c0 \"Diisopentadecanoylphosphatidylserine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15686_c0 \"CDP_1_2_diisopentadecanoylglycerol_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15553_c0 \"phosphatidylserine_ditetradecanoyl_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15423_c0 \"CDP_1_2_ditetradecanoylglycerol_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15690_c0 \"Dianteisoheptadecanoylphosphatidylserine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15684_c0 \"CDP_1_2_dianteisoheptadecanoylglycerol_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15683_c0 \"CDP_1_2_diisoheptadecanoylglycerol_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15689_c0 \"Diisoheptadecanoylphosphatidylserine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15417_c0 \"CDP_1_2_didodecanoylglycerol_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15552_c0 \"phosphatidylserine_didodecanoyl_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15685_c0 \"CDP_1_2_diisotetradecanoylglycerol_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15691_c0 \"Diisotetradecanoylphosphatidylserine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15558_c0 \"phosphatidylserine_dioctadec_11_enoyl_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15420_c0 \"CDP_1_2_dioctadec_11_enoylglycerol_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15556_c0 \"phosphatidylserine_dihexadec_9_enoyl_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15418_c0 \"CDP_1_2_dihexadec_9_enoylglycerol_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15688_c0 \"CDP_1_2_diisohexadecanoylglycerol_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15694_c0 \"Diisohexadecanoylphosphatidylserine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00557_c0 \"Siroheme_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03426_c0 \"Sirohydrochlorin_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd10515_c0 \"Fe2_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15340_c0 \"2_Acyl_sn_glycero_3_phosphoethanolamine_hexadec_9_enoyl_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15237_c0 \"hexadecenoate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15532_c0 \"phosphatidylethanolamine_dihexadec_9enoyl_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15362_c0 \"2_tetradec_7_enoyl_sn_glycerol_3_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15298_c0 \"tetradecenoate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15269_c0 \"octadecenoate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd12547_c0 \"L_2_Lysophosphatidylethanolamine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15534_c0 \"phosphatidylethanolamine_dioctadec_11_enoyl_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15358_c0 \"2_octadecanoyl_sn_glycerol_3_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01080_c0 \"ocdca_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15348_c0 \"2_Acyl_sn_glycero_3_phosphoglycerol_octadecanoyl_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15321_c0 \"1_Acyl_sn_glycero_3_phosphoglycerol_hexadecanoyl_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00214_c0 \"Palmitate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15324_c0 \"1_Acyl_sn_glycero_3_phosphoglycerol_octadec_11_enoyl_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03847_c0 \"Myristic_acid_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15529_c0 \"phosphatidylethanolamine_ditetradecanoyl_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15314_c0 \"1_Acyl_sn_glycero_3_phosphoethanolamine_tetradecanoyl_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15363_c0 \"2_tetradecanoyl_sn_glycerol_3_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15337_c0 \"2_Acyl_sn_glycero_3_phosphoethanolamine_tetradecanoyl_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15339_c0 \"2_Acyl_sn_glycero_3_phosphoethanolamine_n_C16_0_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15531_c0 \"phosphatidylethanolamine_dihexadecanoyl_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15344_c0 \"2_Acyl_sn_glycero_3_phosphoglycerol_tetradecanoyl_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15349_c0 \"2_Acyl_sn_glycero_3_phosphoglycerol_octadec_11_enoyl_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15530_c0 \"phosphatidylethanolamine_ditetradec_7_enoyl_c0\">\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15315_c0 \"1_Acyl_sn_glycero_3_phosphoethanolamine_tetradec_7_enoyl_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15320_c0 \"1_Acyl_sn_glycero_3_phosphoglycerol_tetradec_7_enoyl_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15318_c0 \"1_Acyl_sn_glycero_3_phosphoglycerol_dodecanoyl_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01741_c0 \"ddca_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15336_c0 \"2_Acyl_sn_glycero_3_phosphoethanolamine_dodecanoyl_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15528_c0 \"phosphatidylethanolamine_didodecanoyl_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15323_c0 \"1_Acyl_sn_glycero_3_phosphoglycerol_octadecanoyl_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15319_c0 \"1_Acyl_sn_glycero_3_phosphoglycerol_tetradecanoyl_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15338_c0 \"2_Acyl_sn_glycero_3_phosphoethanolamine_tetradec_7_enoyl_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15354_c0 \"2_hexadec_9_enoyl_sn_glycerol_3_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15346_c0 \"2_Acyl_sn_glycero_3_phosphoglycerol_hexadecanoyl_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15343_c0 \"2_Acyl_sn_glycero_3_phosphoglycerol_dodecanoyl_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15316_c0 \"1_Acyl_sn_glycero_3_phosphoethanolamine_hexadecanoyl_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15313_c0 \"1_Acyl_sn_glycero_3_phosphoethanolamine_dodecanoyl_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15350_c0 \"2_dodecanoyl_sn_glycerol_3_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15345_c0 \"2_Acyl_sn_glycero_3_phosphoglycerol_tetradec_7_enoyl_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15355_c0 \"2_hexadecanoyl_sn_glycerol_3_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15347_c0 \"2_Acyl_sn_glycero_3_phosphoglycerol_hexadec_9_enoyl_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15341_c0 \"2_Acyl_sn_glycero_3_phosphoethanolamine_n_C18_0_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15533_c0 \"phosphatidylethanolamine_dioctadecanoyl_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15342_c0 \"2_Acyl_sn_glycero_3_phosphoethanolamine_octadec_11_enoyl_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15317_c0 \"1_Acyl_sn_glycero_3_phosphoethanolamine_hexadec_9_enoyl_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15322_c0 \"1_Acyl_sn_glycero_3_phosphoglycerol_hexadec_9_enoyl_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15357_c0 \"2_octadec_11_enoyl_sn_glycerol_3_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00061_c0 \"Phosphoenolpyruvate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00482_c0 \"2_Phospho_D_glycerate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00152_c0 \"Agmatine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03572_c0 \"S_3_Hydroxyisobutyryl_CoA_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03127_c0 \"2E_Tetradecenoyl_CoA_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03115_c0 \"S_3_Hydroxytetradecanoyl_CoA_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03118_c0 \"S_Hydroxydecanoyl_CoA_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03129_c0 \"2E_Decenoyl_CoA_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03116_c0 \"S_3_Hydroxydodecanoyl_CoA_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02060_c0 \"2E_Dodecenoyl_CoA_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03122_c0 \"S_Hydroxyhexanoyl_CoA_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03125_c0 \"2E_Hexenoyl_CoA_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02691_c0 \"2_methyl_3_hydroxy_butyryl_CoA_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03126_c0 \"2E_Hexadecenoyl_CoA_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03113_c0 \"S_3_Hydroxyhexadecanoyl_CoA_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03120_c0 \"S_Hydroxyoctanoyl_CoA_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03130_c0 \"2E_Octenoyl_CoA_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00052_c0 \"CTP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00246_c0 \"Inosine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00246_e0 \"Inosine_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03279_c0 \"Deoxyinosine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03279_e0 \"Deoxyinosine_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00367_e0 \"Cytidine_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00277_c0 \"Deoxyguanosine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00277_e0 \"Deoxyguanosine_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00249_e0 \"Uridine_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00184_c0 \"Thymidine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00184_e0 \"Thymidine_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00412_c0 \"Deoxyuridine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00412_e0 \"Deoxyuridine_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00182_c0 \"Adenosine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00182_e0 \"Adenosine_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00654_c0 \"Deoxycytidine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00654_e0 \"Deoxycytidine_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00802_c0 \"D_fructose_1_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00290_c0 \"D_fructose_1_6_bisphosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00805_c0 \"D_Tagatose_6_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02371_c0 \"D_Tagatose_1_6_biphosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02069_c0 \"3_Phosphonooxypyruvate_c0\">\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00169_c0 \"3_Phosphoglycerate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd08023_e0 \"methanesulfonate_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd09878_e0 \"Sulfoacetate_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11578_e0 \"hexanesulfonate_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00210_e0 \"Taurine_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03048_e0 \"Isethionate_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11579_e0 \"ethanesulfonate_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00395_c0 \"L_Cysteate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00395_e0 \"L_Cysteate_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11596_e0 \"butanesulfonate_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11575_c0 \"MOPS_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11575_e0 \"MOPS_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00222_c0 \"GLCN_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00480_c0 \"2_Dehydro_D_gluconate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00020_c0 \"Pyruvate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02760_c0 \"cellobiose_6_phoshate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00158_e0 \"CELB_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00009_e0 \"Phosphate_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02160_c0 \"N2_Succinyl_L_ornithine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02730_c0 \"3_Deoxy_D_manno_octulosonate8_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00817_c0 \"D_Arabinose5_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11494_c0 \"Acetyl_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03448_c0 \"2_Octaprenyl_3_methyl_6_methoxy_1_4_benzoquinone_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03449_c0 \"2_Octaprenyl_3_methyl_5_hydroxy_6_methoxy_1_4_benzoquinone_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02229_c0 \"Bactoprenyl_diphosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15666_c0 \"Peptidoglycan_polymer_n_1_subunits_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15665_c0 \"Peptidoglycan_polymer_n_subunits_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03495_c0 \"Undecaprenyl_diphospho_N_acetylmuramoyl__N_acetylglucosamine_L_ala_D_glu_meso_2_6_diaminopimeloyl_D_ala_D_ala_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15698_c0 \"Diisopentadecanoylphosphatidylethanolamine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15699_c0 \"Dianteisopentadecanoylphosphatidylethanolamine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15696_c0 \"Dianteisoheptadecanoylphosphatidylethanolamine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15695_c0 \"Diisoheptadecanoylphosphatidylethanolamine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15700_c0 \"Diisohexadecanoylphosphatidylethanolamine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15697_c0 \"Diisotetradecanoylphosphatidylethanolamine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02826_c0 \"5_Phosphoribosylformylglycinamidine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00102_c0 \"Glyceraldehyde3_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00945_c0 \"2_Dehydro_3_deoxy_D_galactonate_6_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00485_c0 \"D_Mannose1_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00083_c0 \"GDP_mannose_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd04098_e0 \"Arsenite_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd04098_c0 \"Arsenite_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01048_e0 \"Arsenate_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01048_c0 \"Arsenate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00239_c0 \"H2S_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00722_c0 \"O_Acetyl_L_serine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11420_c0 \"trdox_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11421_c0 \"trdrd_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00808_c0 \"L_ribulose_5_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00397_c0 \"L_Ribulose_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00171_c0 \"D_Ribulose5_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00258_c0 \"D_Ribulose_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00048_c0 \"Sulfate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00048_e0 \"Sulfate_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00207_c0 \"Guanine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00509_c0 \"deoxyribose_1_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00475_c0 \"Ribose_1_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00309_c0 \"XAN_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01217_c0 \"Xanthosine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00128_c0 \"Adenine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00311_c0 \"Guanosine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00226_c0 \"HYXN_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03471_c0 \"Nicotinate_D_ribonucleoside_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00218_c0 \"Niacin_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00438_c0 \"Deoxyadenosine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00133_c0 \"Nicotinamide_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02016_c0 \"N_Ribosylnicotinamide_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00092_c0 \"Uracil_c0\">\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02258_c0 \"4_Hydroxy_2_oxovalerate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00461_c0 \"Oxopent_4_enoate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00086_c0 \"Propionyl_CoA_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00287_c0 \"3_Oxo_2_methylpropanoate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00191_c0 \"3_Oxopropanoate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00072_c0 \"D_fructose_6_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00079_c0 \"D_glucose_6_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00863_c0 \"beta_D_Glucose_6_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00118_c0 \"Putrescine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00147_c0 \"5_Methylthioadenosine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00837_c0 \"S_Adenosylmethioninamine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15797_c0 \"Isopentadecanoylcardiolipin_B_subtilis_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00100_c0 \"Glycerol_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15791_c0 \"Palmitoylcardiolipin_B_subtilis_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15794_c0 \"Isoheptadecanoylcardiolipin_B_subtilis_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15795_c0 \"Anteisoheptadecanoylcardiolipin_B_subtilis_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15798_c0 \"Anteisopentadecanoylcardiolipin_B_subtilis_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15792_c0 \"Myristoylcardiolipin_B_subtilis_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15799_c0 \"Isohexadecanoylcardiolipin_B_subtilis_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15796_c0 \"Isotetradecanoylcardiolipin_B_subtilis_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15793_c0 \"Stearoylcardiolipin_B_subtilis_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02227_c0 \"S_Ribosylhomocysteine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01981_c0 \"5_Methylthio_D_ribose_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03496_c0 \"Undecaprenyl_diphospho_N_acetylmuramoyl_N_acetylglucosamine_L_alanyl_D_glutaminyl_meso_2_6_diaminopimeloyl_D_alanyl_D_alanine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03492_c0 \"Undecaprenyl_diphospho_N_acetylmuramoyl_N_acetylglucosamine_L_alanyl_D_isoglutaminyl_L_lysyl_D_alanyl_D_alanine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03491_c0 \"Undecaprenyl_diphospho_N_acetylmuramoyl_N_acetylglucosamine_L_alanyl_gamma_D_glutamyl_L_lysyl_D_alanyl_D_alanine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03487_c0 \"Undecaprenyl_diphospho_N_acetylmuramoyl_N_acetylglucosamine_L_alanyl_D_glutamyl_L_lysyl_D_alanyl_D_alanine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03488_c0 \"Undecaprenyl_diphospho_N_acetylmuramoyl_N_acetylglucosamine_L_alanyl_D_glutaminyl_L_lysyl_D_alanyl_D_alanine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00238_c0 \"Sedoheptulose7_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00101_c0 \"ribose_5_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00236_c0 \"D_Erythrose4_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd08210_c0 \"ADC_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00443_c0 \"ABEE_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00186_c0 \"D_Glutamate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00106_e0 \"Fumarate_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00042_c0 \"GSH_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02182_c0 \"R_S_Lactoylglutathione_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00428_c0 \"2_Oxopropanal_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00386_c0 \"D_Malate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00666_c0 \"Tartrate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00223_c0 \"Glycerate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02186_c0 \"Oxaloglycolate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00432_c0 \"meso_Tartrate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00415_c0 \"Quinol_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03697_c0 \"Arbutin_6P_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03698_c0 \"Salicin_6P_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01553_c0 \"Saligenin_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00203_c0 \"1_3_Bisphospho_D_glycerate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00162_c0 \"Aminoethanol_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00908_c0 \"Glycerophosphoethanolamine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02090_c0 \"Glycerophosphoglycerol_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00507_c0 \"Glycerophosphocholine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00264_e0 \"Spermidine_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00118_e0 \"Putrescine_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02536_c0 \"Muconolactone_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00114_c0 \"IMP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00126_c0 \"GMP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00911_c0 \"6_phospho_D_glucono_1_5_lactone_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd08636_c0 \"4_5_dihydroxy_2_3_pentanedione_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd08636_b \"4_5_dihydroxy_2_3_pentanedione_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00096_c0 \"CDP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00280_c0 \"D_Galacturonate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00437_c0 \"D_Tagaturonate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00672_c0 \"D_Fructuronate_c0\">\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00164_c0 \"Glucuronate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03752_c0 \"Galactitol_1_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01171_e0 \"Dulcose_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00211_e0 \"Butyrate_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00142_e0 \"Acetoacetate_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11830_c0 \"S_Aminomethyldihydrolipoylprotein_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd12005_c0 \"Lipoylprotein_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00030_c0 \"Mn2_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00030_e0 \"Mn2_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00025_c0 \"H2O2_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00532_c0 \"O2__c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00157_c0 \"Glycerone_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02124_c0 \"2_Methylacetoacetyl_CoA_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01507_c0 \"3_Oxoadipyl_CoA_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd09844_c0 \"3S_3_Hydroxyadipyl_CoA_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03119_c0 \"3_Oxodecanoyl_CoA_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03114_c0 \"3_Oxopalmitoyl_CoA_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03121_c0 \"3_Oxooctanoyl_CoA_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03117_c0 \"3_Oxododecanoyl_CoA_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03123_c0 \"3_Oxohexanoyl_CoA_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd12689_c0 \"3_Oxotetradecanoyl_CoA_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00655_c0 \"Dephospho_CoA_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00343_c0 \"N_Carbamoyl_L_aspartate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00146_c0 \"Carbamoylphosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00200_c0 \"4MOP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00508_c0 \"3MOP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00075_c0 \"Nitrite_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00209_c0 \"Nitrate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00334_c0 \"L_Lactaldehyde_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00159_c0 \"L_Lactate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00834_c0 \"Phosphopantetheine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02666_c0 \"R_4_Phosphopantothenoyl_L_cysteine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd12370_c0 \"apo_ACP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15378_c0 \"4_Hydroxy_benzylalcohol_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00018_c0 \"AMP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd08289_c0 \"1_deoxy_D_xylulose5_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02654_c0 \"4_Methyl_5__2_phosphoethyl_thiazole_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02979_c0 \"phosphoribosylformiminoaicar_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02991_c0 \"phosphoribulosylformimino_AICAR_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00047_c0 \"Formate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00129_e0 \"L_Proline_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00224_c0 \"L_Arabinose_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00224_e0 \"L_Arabinose_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00154_c0 \"Xylose_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00154_e0 \"Xylose_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00108_e0 \"Galactose_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00299_c0 \"dUMP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00298_c0 \"dTMP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00550_c0 \"D_Serine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00550_e0 \"D_Serine_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00033_e0 \"Glycine_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00054_e0 \"L_Serine_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00117_c0 \"D_Alanine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00117_e0 \"D_Alanine_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00095_c0 \"Glycerone_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00448_c0 \"D_Glyceraldehyde_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00349_c0 \"Sedoheptulose_1_7_bisphosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00635_c0 \"Cbl_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00918_c0 \"2_Acetamido_5_oxopentanoate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00342_c0 \"N_Acetylornithine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00080_e0 \"Glycerol_3_phosphate_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00523_c0 \"Trehalose_6_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00026_c0 \"UDP_glucose_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00193_c0 \"APS_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00039_e0 \"L_Lysine_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00087_c0 \"Tetrahydrofolate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd06227_c0 \"THF_L_glutamate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00683_c0 \"Dihydropteroate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00330_c0 \"Dihydrofolate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00201_c0 \"10_Formyltetrahydrofolate_c0\">\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03524_c0 \"10_Formyl_THF_L_glutamate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00119_e0 \"L_Histidine_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00176_c0 \"2_keto_3_deoxygluconate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00608_c0 \"D_Altronate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd09254_c0 \"2_3_dihydroxicinnamic_acid_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd09252_c0 \"3_Coumaric_acid_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02501_c0 \"2_3_Dihydroxyphenylpropanoate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00882_c0 \"Melilotate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd08304_c0 \"Dihydro_3_coumaric_acid_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02100_c0 \"L_Xylulose_5_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd10596_c0 \"3_keto_L_gulonate_6_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01260_c0 \"Lauroyl_CoA_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03124_c0 \"Hexanoyl_CoA_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03128_c0 \"Decanoyl_CoA_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01335_c0 \"Octanoyl_CoA_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00205_e0 \"K_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00205_c0 \"K_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03831_c0 \"ADP_L_glycero_D_manno_heptose_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03830_c0 \"ADP_D_glycero_D_manno_heptose_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03470_c0 \"Iminoaspartate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00875_c0 \"KDO_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00288_c0 \"D_Glucosamine_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00810_c0 \"Orotidylic_acid_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01571_c0 \"2_3_Cyclic_CMP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03454_c0 \"3_CMP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01570_c0 \"2_3_Cyclic_AMP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00988_c0 \"3_AMP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00989_c0 \"3_UMP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01572_c0 \"2_3_Cyclic_UMP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03701_c0 \"Gp_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03702_c0 \"2_3_Cyclic_GMP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01620_c0 \"Precorrin_2_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03420_c0 \"Precorrin_3A_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd08369_c0 \"Cobalt_precorrin_3_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd08368_c0 \"Cobalt_precorrin_2_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd14961_c0 \"Cobalt_precorrin_7_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd08375_c0 \"Cobalt_precorrin_8_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03835_c0 \"Precorrin_8_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11640_c0 \"H2_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02295_c0 \"1_4_Dihydroxy_2_naphthoate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02557_c0 \"Farnesylfarnesylgeraniol_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd09410_c0 \"Demethylphylloquinone_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03214_c0 \"Phytyl_diphosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00307_c0 \"Cytosine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00151_c0 \"Thymine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01587_c0 \"5_Methylcytosine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15432_c0 \"core_oligosaccharide_lipid_A_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15477_c0 \"glucosyl_glucosyl_galactosyl_glucosyl_inner_core_oligosaccharide_lipid_A_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00344_c0 \"N_Formimino_L_glutamate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02311_c0 \"4_Imidazolone_5_propanoate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15747_c0 \"Myristoyllipoteichoic_acid_n24__linked__unsubstituted_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15765_c0 \"Myristoyllipoteichoic_acid_n24__linked__N_acetyl_D_glucosamine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15768_c0 \"Anteisoheptadecanoyllipoteichoic_acid_n24__linked__N_acetyl_D_glucosamine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15750_c0 \"Anteisoheptadecanoyllipoteichoic_acid_n24__linked__unsubstituted_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15754_c0 \"Isohexadecanoyllipoteichoic_acid_n24__linked__unsubstituted_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15772_c0 \"Isohexadecanoyllipoteichoic_acid_n24__linked__N_acetyl_D_glucosamine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15748_c0 \"Stearoyllipoteichoic_acid_n24__linked__unsubstituted_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15766_c0 \"Stearoyllipoteichoic_acid_n24__linked__N_acetyl_D_glucosamine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15746_c0 \"Palmitoyllipoteichoic_acid_n24__linked__unsubstituted_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15764_c0 \"Palmitoyllipoteichoic_acid_n24__linked__N_acetyl_D_glucosamine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15751_c0 \"Isotetradecanoyllipoteichoic_acid_n24__linked__unsubstituted_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15769_c0 \"Isotetradecanoyllipoteichoic_acid_n24__linked__N_acetyl_D_glucosamine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15767_c0 \"Isoheptadecanoyllipoteichoic_acid_n24__linked__N_acetyl_D_glucosamine_c0\">\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15749_c0 \"Isoheptadecanoyllipoteichoic_acid_n24__linked__unsubstituted_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15753_c0 \"Anteisopentadecanoyllipoteichoic_acid_n24__linked__unsubstituted_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15771_c0 \"Anteisopentadecanoyllipoteichoic_acid_n24__linked__N_acetyl_D_glucosamine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00946_c0 \"Undecaprenyl_diphospho_N_acetyl_glucosamine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00286_c0 \"Undecaprenylphosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15770_c0 \"Isopentadecanoyllipoteichoic_acid_n24__linked__N_acetyl_D_glucosamine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15752_c0 \"Isopentadecanoyllipoteichoic_acid_n24__linked__unsubstituted_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11436_c0 \"fa3_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11440_c0 \"fa6_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11431_c0 \"fa11_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11430_c0 \"fa1_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11438_c0 \"fa4_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11433_c0 \"fa12_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15274_c0 \"Octadecenoyl_CoA_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15238_c0 \"Hexadecenoyl_CoA_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01997_c0 \"Dimethylbenzimidazole_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00873_c0 \"Nicotinate_ribonucleotide_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02904_c0 \"alpha_Ribazole_5_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd16540_c0 \"5_Deoxy_glucuronic_acid_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02631_c0 \"DKDI_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd04242_c0 \"DKH_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd04920_c0 \"D_Glycero_D_manno_heptose1_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01401_c0 \"Vitamin_K1_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03447_c0 \"2_Octaprenyl_6_methoxy_1_4_benzoquinone_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd17041_c0 \"Protein_biosynthesis_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00345_c0 \"5_Methyltetrahydrofolate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00125_c0 \"5_10_Methylenetetrahydrofolate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00890_c0 \"UDP_N_acetylmuramoyl_L_alanine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00773_c0 \"UDP_MurNAc_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03002_c0 \"Lipid_A_disaccharide_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02930_c0 \"Lipid_X_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02835_c0 \"UDP_2_3_bis3_hydroxytetradecanoylglucosamine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02210_c0 \"Indoleglycerol_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00359_c0 \"indol_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00065_c0 \"L_Tryptophan_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02720_c0 \"5_Amino_6__5_phosphoribitylaminouracil_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00931_c0 \"5_Amino_6__5_phosphoribosylaminouracil_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00079_e0 \"D_glucose_6_phosphate_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01912_c0 \"L_Fucose_1_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01912_e0 \"L_Fucose_1_phosphate_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00235_c0 \"D_mannose_6_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00235_e0 \"D_mannose_6_phosphate_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00371_c0 \"Propanal_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00453_c0 \"1_2_Propanediol_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02498_c0 \"2_3_Dihydroxy_isovalerate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02535_c0 \"2_3_Dihydroxy_3_methylvalerate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00809_c0 \"O_Phospho_L_homoserine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03608_c0 \"4_Hydroxy_L_threonine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03607_c0 \"4_Phosphonooxy_threonine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00521_c0 \"dTDP_4_oxo_6_deoxy_D_glucose_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00830_c0 \"4_Hydroxy_2_oxoglutarate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01974_c0 \"4_Hydroxy_L_glutamate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00403_c0 \"D_Mannonate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02775_c0 \"4_Amino_5_phosphomethyl_2_methylpyrimidine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00939_c0 \"Toxopyrimidine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02894_c0 \"4_Amino_2_methyl_5_diphosphomethylpyrimidine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02851_c0 \"AICAR_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02884_c0 \"FAICAR_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15488_c0 \"heptosyl_phospho_heptosyl_heptosyl_kdo2_lipidA_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00868_c0 \"p_hydroxyphenylpyruvate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00219_c0 \"Prephenate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00616_c0 \"Pretyrosine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00143_c0 \"Phenylpyruvate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00930_c0 \"imidazole_acetol_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03421_c0 \"Cobyrinate_c0\">\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03832_c0 \"Hydrogenobyrinate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00043_c0 \"UDP_galactose_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00348_c0 \"D_Galactose_1_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd17042_c0 \"DNA_replication_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01262_c0 \"Amylotriose_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00261_c0 \"L_Lyxulose_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03861_c0 \"L_Xylulose_1_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00642_c0 \"L_Rhamnulose_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00831_c0 \"L_Rhamnulose_1_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03446_c0 \"2_Octaprenyl_6_methoxyphenol_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02625_c0 \"3_Hydroxy_L_1_pyrroline_5_carboxylate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00851_c0 \"trans_4_Hydroxy_L_proline_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00504_c0 \"LL_2_6_Diaminopimelate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00516_c0 \"meso_2_6_Diaminopimelate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00221_c0 \"D_Lactate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00525_c0 \"UDP_N_acetylmuramoyl_L_alanyl_D_glutamate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00510_c0 \"deoxyribose_5_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00638_c0 \"Deamido_NAD_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00103_c0 \"PRPP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00497_c0 \"XMP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02820_c0 \"UDP_N_acetylglucosamine_enolpyruvate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00168_c0 \"2_3_Dihydroxybenzoate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02566_c0 \"2_3_Dihydroxy_2_3_dihydrobenzoate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00045_c0 \"Adenosine_3_5_bisphosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00104_c0 \"BIOT_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15414_c0 \"d_biotin_d_sulfoxide_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03583_c0 \"D_arabino_6_Phospho_hex_3_ulose_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03189_c0 \"3_Carboxy_1_hydroxypropyl_ThPP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00056_c0 \"TPP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00213_c0 \"Lipoamide_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00860_c0 \"S_Succinyldihydrolipoamide_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02201_c0 \"4_phosphopantothenate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00797_c0 \"R_3_Hydroxybutanoate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00797_e0 \"R_3_Hydroxybutanoate_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00956_c0 \"1_2_carboxyphenylamino_1_deoxyribulose_5_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02948_c0 \"MurAcoyl_L_Ala_D_gamma_Glu_L_Lys_D_Ala_D_Ala_diphospho__undecaprenol_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03494_c0 \"Undecaprenyl_diphospho_N_acetylmuramoyl_L_alanyl_D_glutamyl_meso_2_6_diaminopimeloyl_D_alanyl_D_alanine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00309_e0 \"XAN_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02103_c0 \"N2_Succinyl_L_arginine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00027_e0 \"D_Glucose_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00082_e0 \"D_Fructose_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03736_c0 \"Lauroyl_KDO2_lipid_IVA_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03586_c0 \"kdo2_lipid_iva_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02740_c0 \"Guanosine_5_triphosphate_3_diphosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00274_c0 \"Citrulline_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00064_c0 \"Ornithine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd08287_c0 \"4__cytidine5_diphospho_2_C_methyl_D_erythritol_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd12139_c0 \"Protein_disulfide_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd12072_c0 \"Protein_dithiol_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00130_e0 \"L_Malate_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00024_e0 \"2_Oxoglutarate_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01716_c0 \"3_Dehydroshikimate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00954_c0 \"6_hydroxymethyl_dihydropterin_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02920_c0 \"7_8_Dihydropterin_pyrophosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02605_c0 \"2_isopropyl_3_oxosuccinate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02693_c0 \"3_Isopropylmalate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02698_c0 \"N_Succinyl_L_2_6_diaminopimelate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00190_c0 \"beta_D_Glucose_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00331_c0 \"cis_Aconitate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00137_c0 \"Citrate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00085_c0 \"beta_Alanine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00408_c0 \"Pantoate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00644_c0 \"PAN_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00158_c0 \"CELB_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15584_c0 \"alpha_Methyl_D_glucoside_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00116_c0 \"Methanol_c0\">\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15585_c0 \"beta_Methylglucoside_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00110_c0 \"Cytochrome_c2_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00109_c0 \"Cytochrome_c3_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00338_c0 \"5_Aminolevulinate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00689_c0 \"Porphobilinogen_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01501_c0 \"2_Methylcitrate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00905_c0 \"Guanosine_3_5_bisdiphosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03920_c0 \"Adenosylcobinamide_GDP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01030_e0 \"Salicin_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03696_e0 \"Ursin_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00387_c0 \"ADPglucose_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd08316_c0 \"D_Glycero_D_manno_heptose1_7_bisphosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00268_e0 \"H2S2O3_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00284_c0 \"6_Phospho_D_gluconate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02711_c0 \"2_Keto_3_deoxy_6_phosphogluconate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00035_e0 \"L_Alanine_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd10162_c0 \"R_3_Hydroxy_3_methyl_2_oxopentanoate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02569_c0 \"2_Oxo_3_hydroxyisovalerate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00668_c0 \"ALCTT_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00498_c0 \"2_Aceto_2_hydroxybutanoate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00712_c0 \"2_Dehydropantoate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00077_c0 \"Catechol_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03762_c0 \"cis_1_2_dihydroxybenzoate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00658_c0 \"Isochorismate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd16335_c0 \"2_Succinyl_5_enolpyruvyl_6_hydroxy_3_cyclohexene_1_carboxylate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00175_c0 \"UDP_N_acetyl_D_galactosamine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00438_e0 \"Deoxyadenosine_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00206_c0 \"dCMP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03834_c0 \"Precorrin_4_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03839_c0 \"Precorrin_5_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd08370_c0 \"Cobalt_precorrin_4_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00653_c0 \"D_Galactonate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00653_e0 \"D_Galactonate_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00294_c0 \"dAMP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00421_c0 \"Triphosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00355_c0 \"Nicotinamide_ribonucleotide_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00355_e0 \"Nicotinamide_ribonucleotide_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03049_c0 \"2_Hydroxyethyl_ThPP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01217_e0 \"Xanthosine_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03646_c0 \"gamma_Glutamyl_3_aminopropiononitrile_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01651_c0 \"L_3_Cyanoalanine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03407_c0 \"gamma_Glutamyl_beta_cyanoalanine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00064_e0 \"Ornithine_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03560_c0 \"Propionyladenylate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00540_c0 \"BET_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00793_c0 \"Thiamine_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03416_c0 \"CoproporphyrinogenI_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03414_c0 \"UroporphyrinogenI_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00774_c0 \"UroporphyrinogenIII_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02083_c0 \"CoproporphyrinogenIII_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00162_e0 \"Aminoethanol_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00296_c0 \"dGMP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02721_c0 \"DKHP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15549_c0 \"phospho_heptosyl_heptosyl_kdo2_lipidA_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00001_e0 \"H2O_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00222_e0 \"GLCN_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00113_c0 \"Isopentenyldiphosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd08615_c0 \"1_Hydroxy_2_methyl_2_butenyl_4_diphosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00202_c0 \"DMAPP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11217_c0 \"1_4_Dihydroxy_2_naphthoyl_CoA_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02021_c0 \"Succinylbenzoyl_CoA_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00363_c0 \"Ethanol_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01329_e0 \"Maltohexaose_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01262_e0 \"Amylotriose_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00179_e0 \"Maltose_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01919_c0 \"maltose_6_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01772_c0 \"Succinylbenzoate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02921_c0 \"SAICAR_c0\">\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02375_c0 \"Adenylosuccinate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00540_e0 \"BET_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00166_c0 \"Calomide_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03422_c0 \"Cobinamide_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03916_c0 \"Adenosyl_cobyrinate_diamide_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03915_c0 \"CobIyrinate_diamide_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02494_c0 \"2_3_Dihydroxybenzoyladenylate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00843_c0 \"Tartronate_semialdehyde_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02439_c0 \"2_Dehydro_3_deoxy_D_glucarate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00515_c0 \"5_Dehydro_4_deoxy_D_glucarate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00314_e0 \"D_Mannitol_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00491_c0 \"D_mannitol_1_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02097_c0 \"L_Glutamyl_5_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00100_e0 \"Glycerol_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00093_c0 \"Anthranilate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00216_c0 \"Chorismate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00806_c0 \"L_Fuculose1_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01186_c0 \"L_Fuculose_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00924_c0 \"AppppA_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00347_c0 \"5_10_Methenyltetrahydrofolate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01476_c0 \"Protoporphyrin_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00791_c0 \"ProtoporphyrinogenIX_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00393_c0 \"Folate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01630_c0 \"cis_cis_Muconate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15469_c0 \"galactosyl_glucosyl_inner_core_oligosaccharide_lipid_A_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15475_c0 \"glucosyl_galactosyl_glucosyl_inner_core_oligosaccharide_lipid_A_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00449_c0 \"Dihydrolipoamide_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd12225_c0 \"Dihydrolipolprotein_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00300_c0 \"Urate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15454_c0 \"dTDP_4_acetamido_4_6_dideoxy_D_galactose_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02616_c0 \"dTDP_4_amino_4_6_dideoxy_D_glucose_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00859_c0 \"Pseudouridine_5_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00932_c0 \"5_O__1_Carboxyvinyl_3_phosphoshikimate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00282_c0 \"S_Dihydroorotate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00247_c0 \"Orotate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd08286_c0 \"2_C_methyl_D_erythritol4_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd16654_c0 \"tricarballylate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00492_c0 \"N_Acetyl_D_mannosamine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00232_c0 \"Neu5Ac_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00524_c0 \"2_Inosose_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00957_c0 \"2_5_Diamino_6_5_phosphoribosylamino_4_pyrimidineone_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00012_e0 \"PPi_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00506_c0 \"gamma_Glutamylcysteine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15484_c0 \"heptosyl_heptosyl_kdo2_lipidA_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00804_c0 \"Sorbitol_6_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd12848_c0 \"Holo_carboxylase_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd12543_c0 \"Carboxybiotin_carboxyl_carrier_protein_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd17043_c0 \"RNA_transcription_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00588_e0 \"Sorbitol_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03091_c0 \"5_Deoxyadenosine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02345_c0 \"L_Glutamate1_semialdehyde_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00136_c0 \"4_Hydroxybenzoate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02678_c0 \"N_Formyl_GAR_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00836_c0 \"S_Acetyldihydrolipoamide_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00861_c0 \"UDP_N_acetyl_D_mannosamine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00013_e0 \"NH3_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00028_c0 \"Heme_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11313_c0 \"hemeO_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00350_c0 \"Farnesyldiphosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00894_c0 \"2_Dehydro_3_deoxy_D_galactonate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01080_e0 \"ocdca_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00214_e0 \"Palmitate_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03847_e0 \"Myristic_acid_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00053_e0 \"L_Glutamine_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02030_c0 \"3_phosphoshikimate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02147_c0 \"4_Phosphoerythronate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01441_c0 \"Acetyl_maltose_c0\">\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00251_c0 \"ADPribose_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00082_c0 \"D_Fructose_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00044_c0 \"3_phosphoadenylylsulfate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00226_e0 \"HYXN_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02731_c0 \"2_Hydroxy_6_oxonona_2_4_diene_1_9_dioate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd09255_c0 \"2_Hydroxy_6_ketononatrienedioate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01710_c0 \"2_Isopropylmaleate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01155_c0 \"Cadaverine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03411_c0 \"Glutathionylspermidine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00434_c0 \"4_Aminobutanal_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00418_c0 \"NO_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01324_c0 \"L_Histidinal_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03423_c0 \"alpha_Ribazole_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00076_c0 \"Sucrose_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00382_c0 \"Melitose_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03200_c0 \"Manninotriose_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03198_c0 \"Melibiose_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01133_c0 \"Stachyose_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00644_e0 \"PAN_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd10515_e0 \"Fe2_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd10516_c0 \"fe3_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd08928_c0 \"L_Threonine_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00738_c0 \"phosphoserine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03606_c0 \"2_Oxo_3_hydroxy_4_phosphobutanoate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00402_c0 \"CDPglycerol_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00233_c0 \"Tetrahydrobiopterin_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00231_c0 \"Dihydrobiopterin_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03914_c0 \"CobIIyrinate_diamide_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03913_c0 \"Hydrogenobyrinate_diamide_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00856_c0 \"3_Carboxy_cis_cis_muconate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00197_c0 \"Protocatechuate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03343_c0 \"Phenylpropanoate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03343_e0 \"Phenylpropanoate_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00153_c0 \"Benzoate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02961_c0 \"Dihydroneopterin_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00099_c0 \"Cl__c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00099_e0 \"Cl__e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd04918_c0 \"D_Glycero_D_manno_heptose7_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00047_e0 \"Formate_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00742_c0 \"Allophanate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15351_c0 \"2_Dehydro_L_gulonate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01793_c0 \"2_5_diketo_D_gluconate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00199_c0 \"4_Oxobutanoate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00111_c0 \"Oxidized_glutathione_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01982_c0 \"5_Phosphoribosylamine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00276_e0 \"GLUM_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00164_e0 \"Glucuronate_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00280_e0 \"D_Galacturonate_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00755_c0 \"Hydroxymethylbilane_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00137_e0 \"Citrate_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02843_c0 \"D_erythro_imidazol_glycerol_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11225_c0 \"3_4_dihydroxy_2_butanone4_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00034_c0 \"Zn2_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00034_e0 \"Zn2_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00782_c0 \"Pimeloyl_CoA_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00800_c0 \"8_Amino_7_oxononanoate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00378_c0 \"Formamide_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00281_c0 \"GABA_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03198_e0 \"Melibiose_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15479_c0 \"glucosyl_inner_core_oligosaccharide_lipid_A_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00588_c0 \"Sorbitol_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15489_c0 \"inner_core_oligosaccharide_lipid_A_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03587_c0 \"kdo2_lipid_a_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00477_c0 \"N_Acetyl_L_glutamate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11621_c0 \"Oxidizedferredoxin_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11620_c0 \"Reducedferredoxin_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00144_c0 \"UDPglucuronate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03451_c0 \"SHCHC_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00751_c0 \"L_Fucose_c0\">\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03443_c0 \"3_Octaprenyl_4_hydroxybenzoate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03444_c0 \"2_Octaprenylphenol_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02394_c0 \"GAR_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00581_c0 \"Urocanate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00383_c0 \"Shikimate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11912_c0 \"tRNA_Glu_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd12227_c0 \"L_Glutamyl_tRNA_Glu_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00501_c0 \"beta_D_Glucose_1_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00139_c0 \"Glycolate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00727_c0 \"2_Phosphoglycolate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02642_c0 \"N_5_phosphoribosyl_anthranilate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00161_e0 \"L_Threonine_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02120_c0 \"Dihydrodipicolinate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd08353_c0 \"E_3_Methoxycarbonylpent_2_enedioate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01563_c0 \"trans_Aconitate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01012_e0 \"Cd2_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01012_c0 \"Cd2_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00531_e0 \"Hg2_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00531_c0 \"Hg2_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd04097_e0 \"Pb_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd04097_c0 \"Pb_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00063_e0 \"Ca2_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00063_c0 \"Ca2_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00307_e0 \"Cytosine_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03517_c0 \"Biotinyl_5_AMP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02862_c0 \"UDPMurAcoyl_L_Ala_D_gamma_Glu_L_Lys_D_Ala_D_Ala_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02552_c0 \"n_acetylglutamyl_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15485_c0 \"heptosyl_kdo2_lipidA_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03833_c0 \"Precorrin_3B_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00176_e0 \"2_keto_3_deoxygluconate_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd10516_e0 \"fe3_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03445_c0 \"2_Octaprenyl_6_hydroxyphenol_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00051_e0 \"L_Arginine_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03724_c0 \"Ferrichrome_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03724_e0 \"Ferrichrome_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02211_c0 \"L_2_Amino_acetoacetate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00446_c0 \"cAMP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01977_c0 \"4_Phospho_L_aspartate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00159_e0 \"L_Lactate_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd14905_c0 \"L_Ascorbate_6_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00876_c0 \"3_Hydroxyisobutyrate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02993_c0 \"Lipid_IVA_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00122_e0 \"N_Acetyl_D_glucosamine_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd08449_c0 \"3_Amino_2_oxopropyl_phosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01311_c0 \"Dethiobiotin_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00764_c0 \"7_8_Diaminononanoate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00635_e0 \"Cbl_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00065_e0 \"L_Tryptophan_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00266_c0 \"Carnitine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd08305_c0 \"crotonobetaine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00209_e0 \"Nitrate_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00075_e0 \"Nitrite_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02465_c0 \"tetrahydrodipicolinate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02724_c0 \"N_Succinyl_L_2_amino_6_oxopimelate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00092_e0 \"Uracil_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00208_e0 \"LACT_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01775_c0 \"Phosphoribosyl_ATP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00058_c0 \"Cu2_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00058_e0 \"Cu2_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02701_c0 \"S_Adenosyl_4_methylthio_2_oxobutanoate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02701_b \"S_Adenosyl_4_methylthio_2_oxobutanoate_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd04539_c0 \"2_Amino_3_oxo_4_phosphonooxybutyrate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00308_c0 \"Malonate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00630_c0 \"3_Oxoadipate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00794_e0 \"TRHL_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02197_c0 \"5_Formyltetrahydrofolate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02333_c0 \"Quinolinate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00138_e0 \"D_Mannose_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01693_c0 \"6_Phosphosucrose_c0\">\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00076_e0 \"Sucrose_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00681_c0 \"Choline_sulfate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00305_c0 \"Thiamin_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00305_e0 \"Thiamin_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03571_c0 \"Lactaldehyde_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00145_c0 \"Hydroxypyruvate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02636_c0 \"4_Methyl_5__2_hydroxyethyl_thiazole_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00281_e0 \"GABA_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00522_c0 \"dTDP_4_oxo_L_rhamnose_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02113_c0 \"dTDP_rhamnose_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd14507_c0 \"Peptide_L_methionine_R_S_oxide_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd12237_c0 \"Peptide_L_methionine_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00819_c0 \"L_Arabinono_1_4_lactone_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00073_c0 \"Urea_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00069_e0 \"L_Tyrosine_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd08625_c0 \"5_Hydroxyisourate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01567_c0 \"R_Allantoin_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01092_c0 \"Allantoin_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00011_e0 \"CO2_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00007_e0 \"O2_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02414_c0 \"L_2_Amino_6_oxopimelate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01101_c0 \"Carbamate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01298_c0 \"Aminoacetone_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd09027_c0 \"5_Hydroxy_2_oxo_4_ureido_2_5_dihydro_1H_imidazole_5_carboxylate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02522_c0 \"2_Aminoadipate_6_semialdehyde_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00352_c0 \"delta1_Piperideine_6_L_carboxylate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00922_c0 \"delta1_Piperideine_2_carboxylate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd02074_c0 \"2_Oxo_6_aminocaproate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00073_e0 \"Urea_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11416_c0 \"Biomass_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11416_b \"Biomass_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00283_c0 \"Geranyldiphosphate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00220_e0 \"Riboflavin_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00581_e0 \"Urocanate_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01777_c0 \"Phosphoribosyl_AMP_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00029_e0 \"Acetate_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00185_c0 \"D_Arabinose_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00185_e0 \"D_Arabinose_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00132_e0 \"L_Asparagine_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00751_e0 \"L_Fucose_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01022_c0 \"Lactate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01022_e0 \"Lactate_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00121_e0 \"L_Inositol_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00020_e0 \"Pyruvate_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01293_c0 \"5_Oxoproline_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01293_e0 \"5_Oxoproline_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00128_e0 \"Adenine_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01092_e0 \"Allantoin_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00388_c0 \"Allantoate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00465_c0 \"Ureidoglycolate_c0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00151_e0 \"Thymine_e0\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00067_b \"H_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00609_b \"D_Glucarate_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00652_b \"D_Mucic_acid_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00041_b \"L_Aspartate_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00036_b \"Succinate_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11590_b \"met_L_ala_L_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11583_b \"Ala_Leu_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15603_b \"Gly_Cys_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15606_b \"Gly_Tyr_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01017_b \"Cys_Gly_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11586_b \"ala_L_glu_L_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11589_b \"gly_asp_L_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11584_b \"Ala_His_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15604_b \"Gly_Leu_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11593_b \"ala_L_asp_L_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11587_b \"Ala_Gln_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11592_b \"gly_glu_L_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11580_b \"Gly_Gln_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11581_b \"gly_asn_L_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11585_b \"L_alanylglycine_b\">\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11591_b \"Gly_Met_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd15605_b \"Gly_Phe_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11582_b \"ala_L_Thr_L_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11588_b \"gly_pro_L_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00156_b \"L_Valine_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00322_b \"L_Isoleucine_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00107_b \"L_Leucine_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01242_b \"Thyminose_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00105_b \"D_Ribose_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00254_b \"Mg_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00149_b \"Co2_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11576_b \"L_methionine_R_oxide_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00060_b \"L_Methionine_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01914_b \"L_Methionine_S_oxide_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00637_b \"D_Methionine_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00098_b \"Choline_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00971_b \"Na_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00023_b \"L_Glutamate_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00396_b \"L_Rhamnose_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03424_b \"Vitamin_B12_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00423_b \"Vitamin_B12r_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00246_b \"Inosine_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03279_b \"Deoxyinosine_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00367_b \"Cytidine_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00277_b \"Deoxyguanosine_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00249_b \"Uridine_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00184_b \"Thymidine_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00412_b \"Deoxyuridine_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00182_b \"Adenosine_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00654_b \"Deoxycytidine_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd08023_b \"methanesulfonate_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd09878_b \"Sulfoacetate_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11578_b \"hexanesulfonate_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00210_b \"Taurine_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03048_b \"Isethionate_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11579_b \"ethanesulfonate_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00395_b \"L_Cysteate_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11596_b \"butanesulfonate_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd11575_b \"MOPS_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00158_b \"CELB_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00009_b \"Phosphate_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd04098_b \"Arsenite_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01048_b \"Arsenate_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00048_b \"Sulfate_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00106_b \"Fumarate_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00264_b \"Spermidine_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00118_b \"Putrescine_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01171_b \"Dulcose_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00211_b \"Butyrate_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00142_b \"Acetoacetate_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00030_b \"Mn2_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00129_b \"L_Proline_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00224_b \"L_Arabinose_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00154_b \"Xylose_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00108_b \"Galactose_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00550_b \"D_Serine_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00033_b \"Glycine_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00054_b \"L_Serine_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00117_b \"D_Alanine_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00080_b \"Glycerol_3_phosphate_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00039_b \"L_Lysine_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00119_b \"L_Histidine_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00205_b \"K_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00079_b \"D_glucose_6_phosphate_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01912_b \"L_Fucose_1_phosphate_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00235_b \"D_mannose_6_phosphate_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00797_b \"R_3_Hydroxybutanoate_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00309_b \"XAN_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00027_b \"D_Glucose_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00082_b \"D_Fructose_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00130_b \"L_Malate_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00024_b \"2_Oxoglutarate_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01030_b \"Salicin_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03696_b \"Ursin_b\">\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00268_b \"H2S2O3_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00035_b \"L_Alanine_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00438_b \"Deoxyadenosine_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00653_b \"D_Galactonate_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00355_b \"Nicotinamide_ribonucleotide_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01217_b \"Xanthosine_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00064_b \"Ornithine_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00162_b \"Aminoethanol_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00001_b \"H2O_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00222_b \"GLCN_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01329_b \"Maltohexaose_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01262_b \"Amylotriose_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00179_b \"Maltose_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00540_b \"BET_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00314_b \"D_Mannitol_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00100_b \"Glycerol_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00012_b \"PPi_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00588_b \"Sorbitol_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00013_b \"NH3_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01080_b \"ocdca_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00214_b \"Palmitate_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03847_b \"Myristic_acid_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00053_b \"L_Glutamine_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00226_b \"HYXN_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00644_b \"PAN_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd10515_b \"Fe2_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03343_b \"Phenylpropanoate_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00099_b \"Cl__b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00047_b \"Formate_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00276_b \"GLUM_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00164_b \"Glucuronate_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00280_b \"D_Galacturonate_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00137_b \"Citrate_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00034_b \"Zn2_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03198_b \"Melibiose_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00161_b \"L_Threonine_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01012_b \"Cd2_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00531_b \"Hg2_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd04097_b \"Pb_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00063_b \"Ca2_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00307_b \"Cytosine_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00176_b \"2_keto_3_deoxygluconate_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd10516_b \"fe3_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00051_b \"L_Arginine_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd03724_b \"Ferrichrome_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00159_b \"L_Lactate_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00122_b \"N_Acetyl_D_glucosamine_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00635_b \"Cbl_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00065_b \"L_Tryptophan_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00209_b \"Nitrate_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00075_b \"Nitrite_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00092_b \"Uracil_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00208_b \"LACT_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00058_b \"Cu2_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00794_b \"TRHL_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00138_b \"D_Mannose_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00076_b \"Sucrose_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00305_b \"Thiamin_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00281_b \"GABA_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00069_b \"L_Tyrosine_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00011_b \"CO2_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00007_b \"O2_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00073_b \"Urea_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00220_b \"Riboflavin_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00581_b \"Urocanate_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00029_b \"Acetate_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00185_b \"D_Arabinose_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00132_b \"L_Asparagine_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00751_b \"L_Fucose_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01022_b \"Lactate_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00121_b \"L_Inositol_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00020_b \"Pyruvate_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01293_b \"5_Oxoproline_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00128_b \"Adenine_b\">\n",
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd01092_b \"Allantoin_b\">\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Use of the species charge attribute is discouraged, use fbc:charge instead: <Species cpd00151_b \"Thymine_b\">\n",
      "Adding exchange reaction EX_cpd15302_b with default bounds for boundary metabolite: cpd15302_b.\n",
      "Adding exchange reaction EX_cpd08636_b with default bounds for boundary metabolite: cpd08636_b.\n",
      "Adding exchange reaction EX_cpd02701_b with default bounds for boundary metabolite: cpd02701_b.\n",
      "Adding exchange reaction EX_cpd11416_b with default bounds for boundary metabolite: cpd11416_b.\n",
      "Adding exchange reaction EX_cpd00067_b with default bounds for boundary metabolite: cpd00067_b.\n",
      "Adding exchange reaction EX_cpd00609_b with default bounds for boundary metabolite: cpd00609_b.\n",
      "Adding exchange reaction EX_cpd00652_b with default bounds for boundary metabolite: cpd00652_b.\n",
      "Adding exchange reaction EX_cpd00041_b with default bounds for boundary metabolite: cpd00041_b.\n",
      "Adding exchange reaction EX_cpd00036_b with default bounds for boundary metabolite: cpd00036_b.\n",
      "Adding exchange reaction EX_cpd11590_b with default bounds for boundary metabolite: cpd11590_b.\n",
      "Adding exchange reaction EX_cpd11583_b with default bounds for boundary metabolite: cpd11583_b.\n",
      "Adding exchange reaction EX_cpd15603_b with default bounds for boundary metabolite: cpd15603_b.\n",
      "Adding exchange reaction EX_cpd15606_b with default bounds for boundary metabolite: cpd15606_b.\n",
      "Adding exchange reaction EX_cpd01017_b with default bounds for boundary metabolite: cpd01017_b.\n",
      "Adding exchange reaction EX_cpd11586_b with default bounds for boundary metabolite: cpd11586_b.\n",
      "Adding exchange reaction EX_cpd11589_b with default bounds for boundary metabolite: cpd11589_b.\n",
      "Adding exchange reaction EX_cpd11584_b with default bounds for boundary metabolite: cpd11584_b.\n",
      "Adding exchange reaction EX_cpd15604_b with default bounds for boundary metabolite: cpd15604_b.\n",
      "Adding exchange reaction EX_cpd11593_b with default bounds for boundary metabolite: cpd11593_b.\n",
      "Adding exchange reaction EX_cpd11587_b with default bounds for boundary metabolite: cpd11587_b.\n",
      "Adding exchange reaction EX_cpd11592_b with default bounds for boundary metabolite: cpd11592_b.\n",
      "Adding exchange reaction EX_cpd11580_b with default bounds for boundary metabolite: cpd11580_b.\n",
      "Adding exchange reaction EX_cpd11581_b with default bounds for boundary metabolite: cpd11581_b.\n",
      "Adding exchange reaction EX_cpd11585_b with default bounds for boundary metabolite: cpd11585_b.\n",
      "Adding exchange reaction EX_cpd11591_b with default bounds for boundary metabolite: cpd11591_b.\n",
      "Adding exchange reaction EX_cpd15605_b with default bounds for boundary metabolite: cpd15605_b.\n",
      "Adding exchange reaction EX_cpd11582_b with default bounds for boundary metabolite: cpd11582_b.\n",
      "Adding exchange reaction EX_cpd11588_b with default bounds for boundary metabolite: cpd11588_b.\n",
      "Adding exchange reaction EX_cpd00156_b with default bounds for boundary metabolite: cpd00156_b.\n",
      "Adding exchange reaction EX_cpd00322_b with default bounds for boundary metabolite: cpd00322_b.\n",
      "Adding exchange reaction EX_cpd00107_b with default bounds for boundary metabolite: cpd00107_b.\n",
      "Adding exchange reaction EX_cpd01242_b with default bounds for boundary metabolite: cpd01242_b.\n",
      "Adding exchange reaction EX_cpd00105_b with default bounds for boundary metabolite: cpd00105_b.\n",
      "Adding exchange reaction EX_cpd00254_b with default bounds for boundary metabolite: cpd00254_b.\n",
      "Adding exchange reaction EX_cpd00149_b with default bounds for boundary metabolite: cpd00149_b.\n",
      "Adding exchange reaction EX_cpd11576_b with default bounds for boundary metabolite: cpd11576_b.\n",
      "Adding exchange reaction EX_cpd00060_b with default bounds for boundary metabolite: cpd00060_b.\n",
      "Adding exchange reaction EX_cpd01914_b with default bounds for boundary metabolite: cpd01914_b.\n",
      "Adding exchange reaction EX_cpd00637_b with default bounds for boundary metabolite: cpd00637_b.\n",
      "Adding exchange reaction EX_cpd00098_b with default bounds for boundary metabolite: cpd00098_b.\n",
      "Adding exchange reaction EX_cpd00971_b with default bounds for boundary metabolite: cpd00971_b.\n",
      "Adding exchange reaction EX_cpd00023_b with default bounds for boundary metabolite: cpd00023_b.\n",
      "Adding exchange reaction EX_cpd00396_b with default bounds for boundary metabolite: cpd00396_b.\n",
      "Adding exchange reaction EX_cpd03424_b with default bounds for boundary metabolite: cpd03424_b.\n",
      "Adding exchange reaction EX_cpd00423_b with default bounds for boundary metabolite: cpd00423_b.\n",
      "Adding exchange reaction EX_cpd00246_b with default bounds for boundary metabolite: cpd00246_b.\n",
      "Adding exchange reaction EX_cpd03279_b with default bounds for boundary metabolite: cpd03279_b.\n",
      "Adding exchange reaction EX_cpd00367_b with default bounds for boundary metabolite: cpd00367_b.\n",
      "Adding exchange reaction EX_cpd00277_b with default bounds for boundary metabolite: cpd00277_b.\n",
      "Adding exchange reaction EX_cpd00249_b with default bounds for boundary metabolite: cpd00249_b.\n",
      "Adding exchange reaction EX_cpd00184_b with default bounds for boundary metabolite: cpd00184_b.\n",
      "Adding exchange reaction EX_cpd00412_b with default bounds for boundary metabolite: cpd00412_b.\n",
      "Adding exchange reaction EX_cpd00182_b with default bounds for boundary metabolite: cpd00182_b.\n",
      "Adding exchange reaction EX_cpd00654_b with default bounds for boundary metabolite: cpd00654_b.\n",
      "Adding exchange reaction EX_cpd08023_b with default bounds for boundary metabolite: cpd08023_b.\n",
      "Adding exchange reaction EX_cpd09878_b with default bounds for boundary metabolite: cpd09878_b.\n",
      "Adding exchange reaction EX_cpd11578_b with default bounds for boundary metabolite: cpd11578_b.\n",
      "Adding exchange reaction EX_cpd00210_b with default bounds for boundary metabolite: cpd00210_b.\n",
      "Adding exchange reaction EX_cpd03048_b with default bounds for boundary metabolite: cpd03048_b.\n",
      "Adding exchange reaction EX_cpd11579_b with default bounds for boundary metabolite: cpd11579_b.\n",
      "Adding exchange reaction EX_cpd00395_b with default bounds for boundary metabolite: cpd00395_b.\n",
      "Adding exchange reaction EX_cpd11596_b with default bounds for boundary metabolite: cpd11596_b.\n",
      "Adding exchange reaction EX_cpd11575_b with default bounds for boundary metabolite: cpd11575_b.\n",
      "Adding exchange reaction EX_cpd00158_b with default bounds for boundary metabolite: cpd00158_b.\n",
      "Adding exchange reaction EX_cpd00009_b with default bounds for boundary metabolite: cpd00009_b.\n",
      "Adding exchange reaction EX_cpd04098_b with default bounds for boundary metabolite: cpd04098_b.\n",
      "Adding exchange reaction EX_cpd01048_b with default bounds for boundary metabolite: cpd01048_b.\n",
      "Adding exchange reaction EX_cpd00048_b with default bounds for boundary metabolite: cpd00048_b.\n",
      "Adding exchange reaction EX_cpd00106_b with default bounds for boundary metabolite: cpd00106_b.\n",
      "Adding exchange reaction EX_cpd00264_b with default bounds for boundary metabolite: cpd00264_b.\n",
      "Adding exchange reaction EX_cpd00118_b with default bounds for boundary metabolite: cpd00118_b.\n",
      "Adding exchange reaction EX_cpd01171_b with default bounds for boundary metabolite: cpd01171_b.\n",
      "Adding exchange reaction EX_cpd00211_b with default bounds for boundary metabolite: cpd00211_b.\n",
      "Adding exchange reaction EX_cpd00142_b with default bounds for boundary metabolite: cpd00142_b.\n",
      "Adding exchange reaction EX_cpd00030_b with default bounds for boundary metabolite: cpd00030_b.\n",
      "Adding exchange reaction EX_cpd00129_b with default bounds for boundary metabolite: cpd00129_b.\n",
      "Adding exchange reaction EX_cpd00224_b with default bounds for boundary metabolite: cpd00224_b.\n",
      "Adding exchange reaction EX_cpd00154_b with default bounds for boundary metabolite: cpd00154_b.\n",
      "Adding exchange reaction EX_cpd00108_b with default bounds for boundary metabolite: cpd00108_b.\n",
      "Adding exchange reaction EX_cpd00550_b with default bounds for boundary metabolite: cpd00550_b.\n",
      "Adding exchange reaction EX_cpd00033_b with default bounds for boundary metabolite: cpd00033_b.\n",
      "Adding exchange reaction EX_cpd00054_b with default bounds for boundary metabolite: cpd00054_b.\n",
      "Adding exchange reaction EX_cpd00117_b with default bounds for boundary metabolite: cpd00117_b.\n",
      "Adding exchange reaction EX_cpd00080_b with default bounds for boundary metabolite: cpd00080_b.\n",
      "Adding exchange reaction EX_cpd00039_b with default bounds for boundary metabolite: cpd00039_b.\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Adding exchange reaction EX_cpd00119_b with default bounds for boundary metabolite: cpd00119_b.\n",
      "Adding exchange reaction EX_cpd00205_b with default bounds for boundary metabolite: cpd00205_b.\n",
      "Adding exchange reaction EX_cpd00079_b with default bounds for boundary metabolite: cpd00079_b.\n",
      "Adding exchange reaction EX_cpd01912_b with default bounds for boundary metabolite: cpd01912_b.\n",
      "Adding exchange reaction EX_cpd00235_b with default bounds for boundary metabolite: cpd00235_b.\n",
      "Adding exchange reaction EX_cpd00797_b with default bounds for boundary metabolite: cpd00797_b.\n",
      "Adding exchange reaction EX_cpd00309_b with default bounds for boundary metabolite: cpd00309_b.\n",
      "Adding exchange reaction EX_cpd00027_b with default bounds for boundary metabolite: cpd00027_b.\n",
      "Adding exchange reaction EX_cpd00082_b with default bounds for boundary metabolite: cpd00082_b.\n",
      "Adding exchange reaction EX_cpd00130_b with default bounds for boundary metabolite: cpd00130_b.\n",
      "Adding exchange reaction EX_cpd00024_b with default bounds for boundary metabolite: cpd00024_b.\n",
      "Adding exchange reaction EX_cpd01030_b with default bounds for boundary metabolite: cpd01030_b.\n",
      "Adding exchange reaction EX_cpd03696_b with default bounds for boundary metabolite: cpd03696_b.\n",
      "Adding exchange reaction EX_cpd00268_b with default bounds for boundary metabolite: cpd00268_b.\n",
      "Adding exchange reaction EX_cpd00035_b with default bounds for boundary metabolite: cpd00035_b.\n",
      "Adding exchange reaction EX_cpd00438_b with default bounds for boundary metabolite: cpd00438_b.\n",
      "Adding exchange reaction EX_cpd00653_b with default bounds for boundary metabolite: cpd00653_b.\n",
      "Adding exchange reaction EX_cpd00355_b with default bounds for boundary metabolite: cpd00355_b.\n",
      "Adding exchange reaction EX_cpd01217_b with default bounds for boundary metabolite: cpd01217_b.\n",
      "Adding exchange reaction EX_cpd00064_b with default bounds for boundary metabolite: cpd00064_b.\n",
      "Adding exchange reaction EX_cpd00162_b with default bounds for boundary metabolite: cpd00162_b.\n",
      "Adding exchange reaction EX_cpd00001_b with default bounds for boundary metabolite: cpd00001_b.\n",
      "Adding exchange reaction EX_cpd00222_b with default bounds for boundary metabolite: cpd00222_b.\n",
      "Adding exchange reaction EX_cpd01329_b with default bounds for boundary metabolite: cpd01329_b.\n",
      "Adding exchange reaction EX_cpd01262_b with default bounds for boundary metabolite: cpd01262_b.\n",
      "Adding exchange reaction EX_cpd00179_b with default bounds for boundary metabolite: cpd00179_b.\n",
      "Adding exchange reaction EX_cpd00540_b with default bounds for boundary metabolite: cpd00540_b.\n",
      "Adding exchange reaction EX_cpd00314_b with default bounds for boundary metabolite: cpd00314_b.\n",
      "Adding exchange reaction EX_cpd00100_b with default bounds for boundary metabolite: cpd00100_b.\n",
      "Adding exchange reaction EX_cpd00012_b with default bounds for boundary metabolite: cpd00012_b.\n",
      "Adding exchange reaction EX_cpd00588_b with default bounds for boundary metabolite: cpd00588_b.\n",
      "Adding exchange reaction EX_cpd00013_b with default bounds for boundary metabolite: cpd00013_b.\n",
      "Adding exchange reaction EX_cpd01080_b with default bounds for boundary metabolite: cpd01080_b.\n",
      "Adding exchange reaction EX_cpd00214_b with default bounds for boundary metabolite: cpd00214_b.\n",
      "Adding exchange reaction EX_cpd03847_b with default bounds for boundary metabolite: cpd03847_b.\n",
      "Adding exchange reaction EX_cpd00053_b with default bounds for boundary metabolite: cpd00053_b.\n",
      "Adding exchange reaction EX_cpd00226_b with default bounds for boundary metabolite: cpd00226_b.\n",
      "Adding exchange reaction EX_cpd00644_b with default bounds for boundary metabolite: cpd00644_b.\n",
      "Adding exchange reaction EX_cpd10515_b with default bounds for boundary metabolite: cpd10515_b.\n",
      "Adding exchange reaction EX_cpd03343_b with default bounds for boundary metabolite: cpd03343_b.\n",
      "Adding exchange reaction EX_cpd00099_b with default bounds for boundary metabolite: cpd00099_b.\n",
      "Adding exchange reaction EX_cpd00047_b with default bounds for boundary metabolite: cpd00047_b.\n",
      "Adding exchange reaction EX_cpd00276_b with default bounds for boundary metabolite: cpd00276_b.\n",
      "Adding exchange reaction EX_cpd00164_b with default bounds for boundary metabolite: cpd00164_b.\n",
      "Adding exchange reaction EX_cpd00280_b with default bounds for boundary metabolite: cpd00280_b.\n",
      "Adding exchange reaction EX_cpd00137_b with default bounds for boundary metabolite: cpd00137_b.\n",
      "Adding exchange reaction EX_cpd00034_b with default bounds for boundary metabolite: cpd00034_b.\n",
      "Adding exchange reaction EX_cpd03198_b with default bounds for boundary metabolite: cpd03198_b.\n",
      "Adding exchange reaction EX_cpd00161_b with default bounds for boundary metabolite: cpd00161_b.\n",
      "Adding exchange reaction EX_cpd01012_b with default bounds for boundary metabolite: cpd01012_b.\n",
      "Adding exchange reaction EX_cpd00531_b with default bounds for boundary metabolite: cpd00531_b.\n",
      "Adding exchange reaction EX_cpd04097_b with default bounds for boundary metabolite: cpd04097_b.\n",
      "Adding exchange reaction EX_cpd00063_b with default bounds for boundary metabolite: cpd00063_b.\n",
      "Adding exchange reaction EX_cpd00307_b with default bounds for boundary metabolite: cpd00307_b.\n",
      "Adding exchange reaction EX_cpd00176_b with default bounds for boundary metabolite: cpd00176_b.\n",
      "Adding exchange reaction EX_cpd10516_b with default bounds for boundary metabolite: cpd10516_b.\n",
      "Adding exchange reaction EX_cpd00051_b with default bounds for boundary metabolite: cpd00051_b.\n",
      "Adding exchange reaction EX_cpd03724_b with default bounds for boundary metabolite: cpd03724_b.\n",
      "Adding exchange reaction EX_cpd00159_b with default bounds for boundary metabolite: cpd00159_b.\n",
      "Adding exchange reaction EX_cpd00122_b with default bounds for boundary metabolite: cpd00122_b.\n",
      "Adding exchange reaction EX_cpd00635_b with default bounds for boundary metabolite: cpd00635_b.\n",
      "Adding exchange reaction EX_cpd00065_b with default bounds for boundary metabolite: cpd00065_b.\n",
      "Adding exchange reaction EX_cpd00209_b with default bounds for boundary metabolite: cpd00209_b.\n",
      "Adding exchange reaction EX_cpd00075_b with default bounds for boundary metabolite: cpd00075_b.\n",
      "Adding exchange reaction EX_cpd00092_b with default bounds for boundary metabolite: cpd00092_b.\n",
      "Adding exchange reaction EX_cpd00208_b with default bounds for boundary metabolite: cpd00208_b.\n",
      "Adding exchange reaction EX_cpd00058_b with default bounds for boundary metabolite: cpd00058_b.\n",
      "Adding exchange reaction EX_cpd00794_b with default bounds for boundary metabolite: cpd00794_b.\n",
      "Adding exchange reaction EX_cpd00138_b with default bounds for boundary metabolite: cpd00138_b.\n",
      "Adding exchange reaction EX_cpd00076_b with default bounds for boundary metabolite: cpd00076_b.\n",
      "Adding exchange reaction EX_cpd00305_b with default bounds for boundary metabolite: cpd00305_b.\n",
      "Adding exchange reaction EX_cpd00281_b with default bounds for boundary metabolite: cpd00281_b.\n",
      "Adding exchange reaction EX_cpd00069_b with default bounds for boundary metabolite: cpd00069_b.\n",
      "Adding exchange reaction EX_cpd00011_b with default bounds for boundary metabolite: cpd00011_b.\n",
      "Adding exchange reaction EX_cpd00007_b with default bounds for boundary metabolite: cpd00007_b.\n",
      "Adding exchange reaction EX_cpd00073_b with default bounds for boundary metabolite: cpd00073_b.\n",
      "Adding exchange reaction EX_cpd00220_b with default bounds for boundary metabolite: cpd00220_b.\n",
      "Adding exchange reaction EX_cpd00581_b with default bounds for boundary metabolite: cpd00581_b.\n",
      "Adding exchange reaction EX_cpd00029_b with default bounds for boundary metabolite: cpd00029_b.\n",
      "Adding exchange reaction EX_cpd00185_b with default bounds for boundary metabolite: cpd00185_b.\n",
      "Adding exchange reaction EX_cpd00132_b with default bounds for boundary metabolite: cpd00132_b.\n",
      "Adding exchange reaction EX_cpd00751_b with default bounds for boundary metabolite: cpd00751_b.\n",
      "Adding exchange reaction EX_cpd01022_b with default bounds for boundary metabolite: cpd01022_b.\n",
      "Adding exchange reaction EX_cpd00121_b with default bounds for boundary metabolite: cpd00121_b.\n",
      "Adding exchange reaction EX_cpd00020_b with default bounds for boundary metabolite: cpd00020_b.\n",
      "Adding exchange reaction EX_cpd01293_b with default bounds for boundary metabolite: cpd01293_b.\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Adding exchange reaction EX_cpd00128_b with default bounds for boundary metabolite: cpd00128_b.\n",
      "Adding exchange reaction EX_cpd01092_b with default bounds for boundary metabolite: cpd01092_b.\n",
      "Adding exchange reaction EX_cpd00151_b with default bounds for boundary metabolite: cpd00151_b.\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn12636_c0 \"aminopeptidase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn12644_c0 \"aminopeptidase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn12637_c0 \"aminopeptidase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn12844_c0 \"Gly_Cys_aminopeptidase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn12640_c0 \"aminopeptidase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn12645_c0 \"aminopeptidase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn12845_c0 \"Gly_Leu_aminopeptidase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn12641_c0 \"aminopeptidase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn12633_c0 \"aminopeptidase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00650_c0 \"membrane_alanyl_aminopeptidase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn12646_c0 \"aminopeptidase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn12846_c0 \"Gly_Phe_aminopeptidase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn12642_c0 \"aminopeptidase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn12634_c0 \"aminopeptidase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn12639_c0 \"aminopeptidase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn12847_c0 \"Gly_Try_aminopeptidase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn12638_c0 \"aminopeptidase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn12643_c0 \"aminopeptidase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn12635_c0 \"aminopeptidase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01675_c0 \"dTTP_alpha_D_glucose_1_phosphate_thymidylyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00868_c0 \"Butanoyl_CoA_acceptor_2_3_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01923_c0 \"2_Methylpropanoyl_CoA_oxygen_2_3_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02268_c0 \"S_2_methylbutanoyl_CoA_oxygen_2_3_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03638_c0 \"Acetyl_CoA_D_glucosamine_1_phosphate_N_acetyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00293_c0 \"UTP_N_acetyl_alpha_D_glucosamine_1_phosphate_uridylyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00802_c0 \"N_L_Argininosuccinate_arginie_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02483_c0 \"4_Carboxymuconolactone_carboxy_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08976_c0 \"NADH_dehydrogenase_demethylmenaquinone_8__0_protons_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08975_c0 \"NADH_dehydrogenase_ubiquinone_8__c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08971_c0 \"NADH_dehydrogenase_menaquinone_8__0_protons_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10215_c0 \"anteisoheptadecanoyl_1_acylglycerol_3_phosphate_O_acyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10219_c0 \"isohexadecanoyl_1_acylglycerol_3_phosphate_O_acyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08089_c0 \"1_octadec_7_enoyl_sn_glycerol_3_phosphate_O_acyltransferase_n_C18_1_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10212_c0 \"myristoyl_1_acylglycerol_3_phosphate_O_acyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08083_c0 \"1_tetradecanoyl_sn_glycerol_3_phosphate_O_acyltransferase_n_C12_0_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10214_c0 \"isoheptadecanoyl_1_acylglycerol_3_phosphate_O_acyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10211_c0 \"palmitoyl_1_acylglycerol_3_phosphate_O_acyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10218_c0 \"anteisopentadecanoyl_1_acylglycerol_3_phosphate_O_acyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08086_c0 \"1_hexadecanoyl_sn_glycerol_3_phosphate_O_acyltransferase_n_C16_0_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10217_c0 \"isopentadecanoyl_1_acylglycerol_3_phosphate_O_acyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08087_c0 \"1_hexadec_7_enoyl_sn_glycerol_3_phosphate_O_acyltransferase_n_C16_1_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08088_c0 \"1_octadecanoyl_sn_glycerol_3_phosphate_O_acyltransferase_n_C18_0_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08085_c0 \"1_tetradec_7_enoyl_sn_glycerol_3_phosphate_O_acyltransferase_n_C14_1_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10216_c0 \"isotetradecanoyl_1_acylglycerol_3_phosphate_O_acyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08084_c0 \"1_tetradecanoyl_sn_glycerol_3_phosphate_O_acyltransferase_n_C14_0_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10213_c0 \"stearoyl_1_acylglycerol_3_phosphate_O_acyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01199_c0 \"ATP_D_xylulose_5_phosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05572_c0 \"glucarate_transport_in_via_proton_symport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05565_c0 \"galactarate_transport_in_via_proton_symport_c0\">\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10206_c0 \"anteisoheptadecanoyl_glycerol_3_phosphate_O_acyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10203_c0 \"myristoyl_glycerol_3_phosphate_O_acyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08549_c0 \"glycerol_3_phosphate_acyltransferase_C16_0_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10209_c0 \"anteisopentadecanoyl_glycerol_3_phosphate_O_acyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08551_c0 \"glycerol_3_phosphate_acyltransferase_C18_0_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10205_c0 \"isoheptadecanoyl_glycerol_3_phosphate_O_acyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08552_c0 \"glycerol_3_phosphate_acyltransferase_C18_1_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10204_c0 \"stearoyl_glycerol_3_phosphate_O_acyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08547_c0 \"glycerol_3_phosphate_acyltransferase_C14_0_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10208_c0 \"isopentadecanoyl_glycerol_3_phosphate_O_acyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10210_c0 \"isohexadecanoyl_glycerol_3_phosphate_O_acyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08548_c0 \"glycerol_3_phosphate_acyltransferase_C14_1_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08546_c0 \"glycerol_3_phosphate_acyltransferase_C12_0_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10202_c0 \"palmitoyl_glycerol_3_phosphate_O_acyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10207_c0 \"isotetradecanoyl_glycerol_3_phosphate_O_acyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08550_c0 \"glycerol_3_phosphate_acyltransferase_C16_1_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01674_c0 \"dCTP_uridine_5_phosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00369_c0 \"GTP_cytidine_5_phosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01370_c0 \"dGTP_uridine_5_phosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01706_c0 \"dUTP_cytidine_5_phosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01516_c0 \"dTTP_uridine_5_phosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01515_c0 \"dTTP_cytidine_5_phosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01510_c0 \"dGTP_cytidine_5_phosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00715_c0 \"ITP_uridine_5_phosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00712_c0 \"UTP_uridine_5_phosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01128_c0 \"dATP_cytidine_5_phosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01679_c0 \"dUTP_uridine_5_phosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01129_c0 \"dATP_uridine_5_phosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00709_c0 \"ATP_uridine_5_phosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00368_c0 \"UTP_cytidine_5_phosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00365_c0 \"ATP_cytidine_5_phosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01705_c0 \"dCTP_cytidine_5_phosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00713_c0 \"GTP_uridine_5_phosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08954_c0 \"3_deoxy_D_manno_octulosonic_acid_transferase_III_LPS_core_biosynthesis_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00225_c0 \"ATP_acetate_phosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00985_c0 \"ATP_acetate_phosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00541_c0 \"L_Threonine_acetaldehyde_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10155_c0 \"L_asparate_transport_via_proton_symport_3_H_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10157_c0 \"Succintate_transport_via_proton_symport_3_H_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10770_c0 \"choline_dehydrogenase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05536_c0 \"Dipeptide_transport_via_ABC_system_met_ala_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05544_c0 \"Dipeptide_transport_via_ABC_system_ala_leu_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn12848_c0 \"Gly_Cys_ABC_transporters_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn12851_c0 \"Gly_Try_ABC_transporters_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05539_c0 \"Dipeptide_transport_via_ABC_system_cgly_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05541_c0 \"Dipeptide_transport_via_ABC_system_ala_glu_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05537_c0 \"Dipeptide_transport_via_ABC_system_gly_asp_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05543_c0 \"Dipeptide_transport_via_ABC_system_ala_his_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn12849_c0 \"Gly_Leu_ABC_transporters_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05533_c0 \"Dipeptide_transport_via_ABC_system_ala_asp_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05540_c0 \"Dipeptide_transport_via_ABC_system_ala_gln_c0\">\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05534_c0 \"Dipeptide_transport_via_ABC_system_gly_glu_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05547_c0 \"Dipeptide_transport_via_ABC_system_gly_gln_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05546_c0 \"Dipeptide_transport_via_ABC_system_gly_asn_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05542_c0 \"Dipeptide_transport_via_ABC_system_ala_gly_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05535_c0 \"Dipeptide_transport_via_ABC_system_gly_met_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn12850_c0 \"Gly_Phe_ABC_transporters_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05545_c0 \"Dipeptide_transport_via_ABC_system_ala_thr_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05538_c0 \"Dipeptide_transport_via_ABC_system_gly_pro_L_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03422_c0 \"N_succinyl_L_glutamate_5_semialdehyde_NAD_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08941_c0 \"Maltodextrin_phosphorylase_maltopentaose_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08943_c0 \"Maltodextrin_phosphorylase_maltoheptaose_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05740_c0 \"cpd00155_phosphorylase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08942_c0 \"Maltodextrin_phosphorylase_maltohexaose_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn06729_c0 \"R_3_Hydroxytetradecanoly_acyl_carrier_protein_UDP_N_acetyl__c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01387_c0 \"Isocitrate_NADP_oxidoreductase_decarboxylating_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00199_c0 \"Oxalosuccinate_NADP_oxidoreductase_decarboxylating_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00124_c0 \"ATP_pyridoxal_5_phosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01807_c0 \"ATP_pyridoxal_5_phosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01396_c0 \"ATP_pyridoxal_5_phosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01506_c0 \"N_Acetyl_D_glucosamine_6_phosphate_2_epimerase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05168_c0 \"L_Valine_ABC_transport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05179_c0 \"L_Isoleucine_ABC_transport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05161_c0 \"L_Leucine_ABC_transport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03061_c0 \"2S_3R_3_Hydroxybutane_1_2_3_tricarboxylate_hydro_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09313_c0 \"Trimethylamine_N_oxide_reductase_menaquinol_8_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08354_c0 \"Dimethyl_sulfoxide_reductase_Menaquinol_8_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08356_c0 \"Dimethyl_sulfoxide_reductase_Demethylmenaquinol_8_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09315_c0 \"Trimethylamine_N_oxide_reductase_demethylmenaquinol_8_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05549_c0 \"Deoxyribose_transport_via_ABC_system_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05160_c0 \"D_Ribose_ABC_transport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05644_c0 \"D_ribose_transport_out_via_ABC_system_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05330_c0 \"3R_3_Hydroxybutanoyl_acyl_carrier_protein_hydro_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05335_c0 \"3R_3_Hydroxypalmitoyl_acyl_carrier_protein_hydro_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05334_c0 \"3R_3_Hydroxybutanoyl_acyl_carrier_protein_hydro_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05329_c0 \"3R_3_Hydroxybutanoyl_acyl_carrier_protein_hydro_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05333_c0 \"3R_3_Hydroxybutanoyl_acyl_carrier_protein_hydro_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05332_c0 \"3R_3_Hydroxypalmitoyl_acyl_carrier_protein_hydro_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05331_c0 \"3R_3_Hydroxybutanoyl_acyl_carrier_protein_hydro_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05415_c0 \"6_methyl_3_hydroxy_heptanoyl_ACP_hydro_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05381_c0 \"14_methyl_3_hydroxy_hexa_decanoyl_ACP_hydro_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05386_c0 \"5_methyl_3_hydroxy_hexanoyl_ACP_hydro_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05427_c0 \"12_methyl_3_hydroxy_tridecanoyl_ACP_hydro_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05431_c0 \"14_methyl_3_hydroxy_pentadecanoyl_ACP_hydro_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05373_c0 \"10_methyl_3_hydroxy_dodecanoyl_ACP_hydro_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05377_c0 \"12_methyl_3_hydroxy_tetra_decanoyl_ACP_hydro_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05398_c0 \"11_methyl_3_hydroxy_dodecanoyl_ACP_hydro_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05419_c0 \"8_methyl_3_hydroxy_nonanoyl_ACP_hydro_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05402_c0 \"13_methyl_3_hydroxy_tetra_decanoyl_ACP_hydro_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05369_c0 \"8_methyl_3_hydroxy_decanoyl_ACP_hydro_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05361_c0 \"4_methyl_3_hydroxy_hexanoyl_ACP_hydro_lyase_c0\">\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05394_c0 \"9_methyl_3_hydroxy_decanoyl_ACP_hydro_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05406_c0 \"15_methyl_3_hydroxy_hexa_decanoyl_ACP_hydro_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05365_c0 \"6_methyl_3_hydroxy_octanoyl_ACP_hydro_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05390_c0 \"7_methyl_3_hydroxy_octanoyl_ACP_hydro_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05423_c0 \"10_methyl_3_hydroxy_undecanoyl_ACP_hydro_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05462_c0 \"trans_Octodec_2_enoyl_ACP_hydro_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05411_c0 \"4_methyl_3_hydroxy_pentanoyl_ACP_hydro_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03910_c0 \"2_Phospho_4_cytidine_5_diphospho_2_C_methyl_D_erythritol_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03492_c0 \"precorrin_6Y_NADP_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn04050_c0 \"precorrin_6A_reductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08258_c0 \"Carnityl_CoA_dehydratse_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05616_c0 \"magnesium_transport_inout_via_permease_no_H_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10474_c0 \"cobalt_transport_inout_via_permease_no_H_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn04713_c0 \"rxn04713_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00990_c0 \"Acetoacetyl_CoA_acetate_CoA_transferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00875_c0 \"Butanoyl_CoA_acetate_CoA_transferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00816_c0 \"Lactose_galactohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02345_c0 \"S_3_Hydroxybutanoyl_CoA_3_epimerase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01134_c0 \"Maltose_alpha_D_glucosylmutase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08527_c0 \"fumarate_reductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08528_c0 \"fumarate_reductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09272_c0 \"succinate_dehydrogenase_irreversible_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10126_c0 \"succinate_dehyrdogenase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08471_c0 \"FMNH2_dependent_monooxygenase_sulfoacetate_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05737_c0 \"FMN_dependent_monooxygenase_taurine_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08467_c0 \"FMNH2_dependent_monooxygenase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10067_c0 \"FMN_dependent_monooxygenase_hexanesulfonate_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08468_c0 \"FMNH2_dependent_monooxygenase_methanesulfonate_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08469_c0 \"FMNH2_dependent_monooxygenase_ethanesulfonate_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08470_c0 \"FMNH2_dependent_monooxygenase_butanesulfonate_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02212_c0 \"2_Dehydro_3_deoxy_D_arabino_heptonate_7_phosphate_phosphate_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05408_c0 \"2_methylpropionyl_CoA_acyl_carrier_protein_transferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05458_c0 \"hexadecanoyl_ACP_acyl_carrier_protein_transferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05453_c0 \"13_methyl_tetra_decanoyl_ACP_acyl_carrier_protein_transferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05465_c0 \"malonyl_ACP_acyl_carrier_protein_transferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05452_c0 \"14_methyl_hexa_decanoyl_ACP_acyl_carrier_protein_transferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05459_c0 \"stearyl_ACP_acyl_carrier_protein_transferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05383_c0 \"3_methylbutanoyl_CoA_acyl_carrier_protein_transferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05456_c0 \"14_methyl_pentadecanoyl_ACP_acyl_carrier_protein_transferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05455_c0 \"12_methyl_tridecanoyl_ACP_acyl_carrier_protein_transferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05451_c0 \"12_methyl_tetra_decanoyl_ACP_acyl_carrier_protein_transferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05358_c0 \"2_methylbutanoyl_CoA_acyl_carrier_protein_transferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05457_c0 \"tetradecanoyl_ACP_acyl_carrier_protein_transferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05454_c0 \"15_methyl_hexa_decanoyl_ACP_acyl_carrier_protein_transferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02160_c0 \"L_Histidinol_phosphate_phosphohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10125_c0 \"NADP_transhydrogenase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00083_c0 \"NADPH_NAD_oxidoreductase_B_specific_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05614_c0 \"L_methionine_R_oxide_transport_via_ABC_system_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05219_c0 \"L_Methionine_ABC_transport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05613_c0 \"L_methionine_S_oxide_transport_via_ABC_system_c0\">\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05183_c0 \"D_Methionine_ABC_transport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03052_c0 \"5_Methyltetrahydropteroyltri_L_glutamate_L_homocysteine_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn11944_c0 \"Methyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09692_c0 \"choline_transport_via_proton_symport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00883_c0 \"1D_myo_Inositol_3_phosphate_phosphahydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00882_c0 \"myo_Inositol_4_phosphate_phosphahydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00881_c0 \"myo_Inositol_1_phosphate_phosphahydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00248_c0 \"S_malate_NAD_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01302_c0 \"L_Homoserine_NADP_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01301_c0 \"L_Homoserine_NAD_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05422_c0 \"10_methyl_3_oxo_undecanoyl_ACP_NADP_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05372_c0 \"10_methyl_3_oxo_dodecanoyl_ACP_NADP_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05341_c0 \"3R_3_Hydroxyoctanoyl_acyl_carrier_protein_NADP_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05376_c0 \"12_methyl_3_oxo_tetra_decanoyl_ACP_NADP_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05342_c0 \"3R_3_Hydroxytetradecanoyl_acyl_carrier_protein_NADP_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05337_c0 \"3R_3_Hydroxyhexanoyl_acyl_carrier_protein_NADP_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05385_c0 \"5_methyl_3_oxo_hexanoyl_ACP_NADP_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05397_c0 \"11_methyl_3_oxo_dodecanoyl_ACP_NADP_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05340_c0 \"3R_3_Hydroxydodecanoyl_acyl_carrier_protein_NADP_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05461_c0 \"3_Hydroxyoctodecanoyl_ACP_NADP_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05368_c0 \"8_methyl_3_oxo_decanoyl_ACP_NADP_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05418_c0 \"8_methyl_3_oxo_nonanoyl_ACP_NADP_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05393_c0 \"9_methyl_3_oxo_decanoyl_ACP_NADP_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05336_c0 \"3R_3_Hydroxypalmitoyl_acyl_carrier_protein_NADP_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05426_c0 \"12_methyl_3_oxo_tridecanoyl_ACP_NADP_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05364_c0 \"6_methyl_3_oxo_octanoyl_ACP_NADP_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05430_c0 \"14_methyl_3_oxo_pentadecanoyl_ACP_NADP_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05410_c0 \"4_methyl_3_oxo_pentanoyl_ACP_NADP_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05339_c0 \"3R_3_Hydroxybutanoyl_acyl_carrier_protein_NADP_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05401_c0 \"13_methyl_3_oxo_tetra_decanoyl_ACP_NADP_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05338_c0 \"3R_3_Hydroxydecanoyl_acyl_carrier_protein_NADP_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05360_c0 \"4_methyl_3_oxo_hexanoyl_ACP_NADP_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05414_c0 \"6_methyl_3_oxo_heptanoyl_ACP_NADP_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05405_c0 \"15_methyl_3_oxo_hexa_decanoyl_ACP_NADP_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05389_c0 \"7_methyl_3_oxo_octanoyl_ACP_NADP_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05380_c0 \"14_methyl_3_oxo_hexa_decanoyl_ACP_NADP_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05448_c0 \"10_methyl_trans_undec_2_enoyl_ACP_NAD_oxidoreductase_A_specific_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05328_c0 \"Hexadecanoyl_acyl_carrier_protein_malonyl_CoA_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05437_c0 \"12_methyl_trans_tetra_dec_2_enoyl_ACP_NAD_oxidoreductase_A_specific_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05324_c0 \"Dodecanoyl_acyl_carrier_protein_malonyl_CoA_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05464_c0 \"trans_Octodec_2_enoyl_ACP_NAD_oxidoreductase_A_specific_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05322_c0 \"Butyryl_acyl_carrier_protein_malonyl_CoA_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05443_c0 \"13_methyl_trans_tetra_dec_2_enoyl_ACP_NAD_oxidoreductase_A_specific_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05434_c0 \"6_methyl_trans_oct_2_enoyl_ACP_NAD_oxidoreductase_A_specific_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05436_c0 \"10_methyl_trans_dodec_2_enoyl_ACP_NAD_oxidoreductase_A_specific_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05440_c0 \"7_methyl_trans_oct_2_enoyl_ACP_NAD_oxidoreductase_A_specific_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05444_c0 \"15_methyl_trans_hexa_dec_2_enoyl_ACP_NAD_oxidoreductase_A_specific_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05433_c0 \"4_methyl_trans_hex_2_enoyl_ACP_NAD_oxidoreductase_A_specific_c0\">\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05325_c0 \"Octanoyl_acyl_carrier_protein_malonyl_CoA_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05449_c0 \"12_methyl_trans_tridec_2_enoyl_ACP_NAD_oxidoreductase_A_specific_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05323_c0 \"Tetradecanoyl_acyl_carrier_protein_malonyl_CoA_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05441_c0 \"9_methyl_trans_dec_2_enoyl_ACP_NAD_oxidoreductase_A_specific_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05445_c0 \"4_methyl_trans_pent_2_enoyl_ACP_NAD_oxidoreductase_A_specific_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05446_c0 \"6_methyl_trans_hept_2_enoyl_ACP_NAD_oxidoreductase_A_specific_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05435_c0 \"8_methyl_trans_dec_2_enoyl_ACP_NAD_oxidoreductase_A_specific_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05326_c0 \"Hexanoyl_acyl_carrier_protein_malonyl_CoA_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05439_c0 \"5_methyl_trans_hex_2_enoyl_ACP_NAD_oxidoreductase_A_specific_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05442_c0 \"11_methyl_trans_dodec_2_enoyl_ACP_NAD_oxidoreductase_A_specific_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05447_c0 \"8_methyl_trans_non_2_enoyl_ACP_NAD_oxidoreductase_A_specific_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05438_c0 \"14_methyl_trans_hexa_dec_2_enoyl_ACP_NAD_oxidoreductase_A_specific_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05327_c0 \"Decanoyl_acyl_carrier_protein_malonyl_CoA_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05450_c0 \"14_methyl_trans_pentadec_2_enoyl_ACP_NAD_oxidoreductase_A_specific_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00048_c0 \"6_7_Dimethyl_8_1_D_ribityllumazine_6_7_dimethyl_8_1_D_ribityl_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn07584_c0 \"ATP_lipoate_adenylyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03164_c0 \"UDP_N_acetylmuramoyl_L_alanyl_D_glutamyl_meso_2_6__c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05298_c0 \"GLUt4i_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05229_c0 \"NCAIR_synthetase_and_NCAIR_mutase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02302_c0 \"O_Acetyl_L_homoserine_succinate_lyase_adding_cysteine_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00740_c0 \"O_Succinyl_L_homoserine_succinate_lyase_adding_cysteine_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01816_c0 \"O_Succinyl_L_homoserine_succinate_lyase_adding_cysteine_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05646_c0 \"L_rhamnose_transport_via_proton_symport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00321_c0 \"L_Lysine_2_3_aminomutase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09104_c0 \"phosphatidylglycerol_phosphate_phosphatase_n_C16_0_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10266_c0 \"anteisoheptadecanoyl_Phosphatidylglycerophosphate_phosphohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09103_c0 \"phosphatidylglycerol_phosphate_phosphatase_n_C14_1_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09107_c0 \"phosphatidylglycerol_phosphate_phosphatase_n_C18_1_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09105_c0 \"phosphatidylglycerol_phosphate_phosphatase_n_C16_1_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10269_c0 \"anteisopentadecanoyl_Phosphatidylglycerophosphate_phosphohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10267_c0 \"isotetradecanoyl_Phosphatidylglycerophosphate_phosphohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09101_c0 \"phosphatidylglycerol_phosphate_phosphatase_n_C14_0_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10268_c0 \"isopentadecanoyl_Phosphatidylglycerophosphate_phosphohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10265_c0 \"isoheptadecanoyl_Phosphatidylglycerophosphate_phosphohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09102_c0 \"phosphatidylglycerol_phosphate_phosphatase_n_C14_0_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09106_c0 \"phosphatidylglycerol_phosphate_phosphatase_n_C18_0_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10270_c0 \"isohexadecanoyl_Phosphatidylglycerophosphate_phosphohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn07586_c0 \"rxn07586_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01416_c0 \"thiosulfate_cyanide_sulfurtranserase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05054_c0 \"adenosylcobyric_acid_R_1_aminopropan_2_ol_ligase_ADP_forming_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn04384_c0 \"adenosylcobyric_acid_R_1_aminopropan_2_yl_phosphate_ligase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08297_c0 \"diacylglycerol_kinase_n_C16_0_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08294_c0 \"diacylglycerol_kinase_n_C12_0_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10255_c0 \"isotetradecanoyl_Diacylglycerol_kinase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08298_c0 \"diacylglycerol_kinase_n_C16_1_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10256_c0 \"isopentadecanoyl_Diacylglycerol_kinase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08300_c0 \"diacylglycerol_kinase_n_C18_1_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08295_c0 \"diacylglycerol_kinase_n_C14_0_c0\">\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08299_c0 \"diacylglycerol_kinase_n_C18_0_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08296_c0 \"diacylglycerol_kinase_n_C14_1_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10253_c0 \"isoheptadecanoyl_Diacylglycerol_kinase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10258_c0 \"isohexadecanoyl_Diacylglycerol_kinase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10257_c0 \"anteisopentadecanoyl_Diacylglycerol_kinase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10254_c0 \"anteisoheptadecanoyl_Diacylglycerol_kinase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00902_c0 \"3_Carboxy_3_hydroxy_4_methylpentanoate_3_methyl_2_oxobutanoate_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00503_c0 \"L_1_Pyrroline_5_carboxylate_NAD_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00183_c0 \"L_Glutamate_5_semialdehyde_NAD_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03962_c0 \"GDP_L_fucose_NADP_4_oxidoreductase_3_5_epimerizing_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09264_c0 \"Spermidine_acetyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09265_c0 \"Spermidine_acetyltransferase_N8_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05187_c0 \"Vitamin_ABC_transport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05515_c0 \"Cobalamin_uptake_in_via_ABC_transport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10230_c0 \"anteisopentadecanoyl_CDPdiacylglycerol_serine_O_phosphatidyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09208_c0 \"Phosphatidylserine_syntase_n_C16_0_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09207_c0 \"Phosphatidylserine_syntase_n_C14_1_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09210_c0 \"Phosphatidylserine_syntase_n_C18_0_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10229_c0 \"isopentadecanoyl_CDPdiacylglycerol_serine_O_phosphatidyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09206_c0 \"Phosphatidylserine_syntase_n_C14_0_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10227_c0 \"anteisoheptadecanoyl_CDPdiacylglycerol_serine_O_phosphatidyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10226_c0 \"isoheptadecanoyl_CDPdiacylglycerol_serine_O_phosphatidyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09205_c0 \"Phosphatidylserine_syntase_n_C12_0_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10228_c0 \"isotetradecanoyl_CDPdiacylglycerol_serine_O_phosphatidyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09211_c0 \"Phosphatidylserine_syntase_n_C18_1_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09209_c0 \"Phosphatidylserine_syntase_n_C16_1_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10231_c0 \"isohexadecanoyl_CDPdiacylglycerol_serine_O_phosphatidyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02056_c0 \"S_Adenosyl_L_methionine_uroporphyrin_III_C_methyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09134_c0 \"Phospholipase_A1_phosphatidylethanolamine__n_C16_1_periplasm_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09125_c0 \"Phospholipase_A1_phosphatidate__n_C14_1_periplasm_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09157_c0 \"Phospholipase_A2_phosphatidylethanolamine__n_C18_1_periplasm_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09128_c0 \"Phospholipase_A1_phosphatidate__n_C18_0_periplasm_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09142_c0 \"Phospholipase_A1_phosphatidylglycerol__n_C18_0_periplasm_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09161_c0 \"Phospholipase_A2_phosphatidylglycerol__n_C16_0_periplasm_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09147_c0 \"Phospholipase_A2_phosphatidate__n_C16_0_periplasm_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09164_c0 \"Phospholipase_A2_phosphatidylglycerol__n_C18_1_periplasm_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09152_c0 \"Phospholipase_A2_phosphatidylethanolamine__n_C14_0_periplasm_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09124_c0 \"Phospholipase_A1_phosphatidate__n_C14_0_periplasm_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09131_c0 \"Phospholipase_A1_phosphatidylethanolamine__n_C14_0_periplasm_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09133_c0 \"Phospholipase_A1_phosphatidylethanolamine__n_C16_0_periplasm_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09138_c0 \"Phospholipase_A1_phosphatidylglycerol__n_C14_0_periplasm_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09143_c0 \"Phospholipase_A1_phosphatidylglycerol__n_C18_1_periplasm_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09153_c0 \"Phospholipase_A2_phosphatidylethanolamine__n_C14_1_periplasm_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09160_c0 \"Phospholipase_A2_phosphatidylglycerol__n_C14_1_periplasm_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09158_c0 \"Phospholipase_A2_phosphatidylglycerol__n_C12_0_periplasm_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09148_c0 \"Phospholipase_A2_phosphatidate__n_C16_1_periplasm_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09144_c0 \"Phospholipase_A2_phosphatidate__n_C12_0_periplasm_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09150_c0 \"Phospholipase_A2_phosphatidate__n_C18_1_periplasm_c0\">\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09130_c0 \"Phospholipase_A1_phosphatidylethanolamine__n_C12_0_periplasm_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09149_c0 \"Phospholipase_A2_phosphatidate__n_C18_0_periplasm_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09163_c0 \"Phospholipase_A2_phosphatidylglycerol__n_C18_0_periplasm_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09159_c0 \"Phospholipase_A2_phosphatidylglycerol__n_C14_0_periplasm_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09132_c0 \"Phospholipase_A1_phosphatidylethanolamine__n_C14_1_periplasm_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09127_c0 \"Phospholipase_A1_phosphatidate__n_C16_1_periplasm_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09140_c0 \"Phospholipase_A1_phosphatidylglycerol__n_C16_0_periplasm_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09145_c0 \"Phospholipase_A2_phosphatidate__n_C14_0_periplasm_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09137_c0 \"Phospholipase_A1_phosphatidylglycerol__n_C12_0_periplasm_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09154_c0 \"Phospholipase_A2_phosphatidylethanolamine__n_C16_0_periplasm_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09151_c0 \"Phospholipase_A2_phosphatidylethanolamine__n_C12_0_periplasm_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09146_c0 \"Phospholipase_A2_phosphatidate__n_C14_1_periplasm_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09123_c0 \"Phospholipase_A1_phosphatidate__n_C12_0_periplasm_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09139_c0 \"Phospholipase_A1_phosphatidylglycerol__n_C14_1_periplasm_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09126_c0 \"Phospholipase_A1_phosphatidate__n_C16_0_periplasm_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09141_c0 \"Phospholipase_A1_phosphatidylglycerol__n_C16_1_periplasm_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09135_c0 \"Phospholipase_A1_phosphatidylethanolamine__n_C18_0_periplasm_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09136_c0 \"Phospholipase_A1_phosphatidylethanolamine__n_C18_1_periplasm_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09155_c0 \"Phospholipase_A2_phosphatidylethanolamine__n_C16_1_periplasm_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09162_c0 \"Phospholipase_A2_phosphatidylglycerol__n_C16_1_periplasm_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09129_c0 \"Phospholipase_A1_phosphatidate__n_C18_1_periplasm_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09156_c0 \"Phospholipase_A2_phosphatidylethanolamine__n_C18_0_periplasm_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00459_c0 \"2_Phospho_D_glycerate_hydro_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00405_c0 \"L_Arginine_carboxy_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02949_c0 \"S_3_Hydroxyisobutyryl_CoA_hydro_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03241_c0 \"S_3_Hydroxytetradecanoyl_CoA_hydro_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03245_c0 \"S_Hydroxydecanoyl_CoA_hydro_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02911_c0 \"S_3_Hydroxydodecanoyl_CoA_hydro_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02167_c0 \"S_3_Hydroxybutanoyl_CoA_hydro_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03250_c0 \"S_Hydroxyhexanoyl_CoA_hydro_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02934_c0 \"2S_3S_3_Hydroxy_2_methylbutanoyl_CoA_hydro_liase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03240_c0 \"S_3_Hydroxyhexadecanoyl_CoA_hydro_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03247_c0 \"S_Hydroxyoctanoyl_CoA_hydro_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10225_c0 \"isohexadecanoyl_phosphatidate_cytidylyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08311_c0 \"CDP_diacylglycerol_synthetase_n_C18_0_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10221_c0 \"anteisoheptadecanoyl_phosphatidate_cytidylyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08308_c0 \"CDP_diacylglycerol_synthetase_n_C14_1_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08309_c0 \"CDP_diacylglycerol_synthetase_n_C16_0_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08312_c0 \"CDP_diacylglycerol_synthetase_n_C18_1_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10222_c0 \"isotetradecanoyl_phosphatidate_cytidylyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08307_c0 \"CDP_diacylglycerol_synthetase_n_C14_0_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10223_c0 \"isopentadecanoyl_phosphatidate_cytidylyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08306_c0 \"CDP_diacylglycerol_synthetase_n_C12_0_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10224_c0 \"anteisopentadecanoyl_phosphatidate_cytidylyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08310_c0 \"CDP_diacylglycerol_synthetase_n_C16_1_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10220_c0 \"isoheptadecanoyl_phosphatidate_cytidylyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10259_c0 \"isoheptadecanoyl_CDPdiacylglycerol_sn_glycerol_3_phosphate_3_phosphatidyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09111_c0 \"Phosphatidylglycerol_synthase_n_C16_0_c0\">\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10263_c0 \"anteisopentadecanoyl_CDPdiacylglycerol_sn_glycerol_3_phosphate_3_phosphatidyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09114_c0 \"Phosphatidylglycerol_synthase_n_C18_1_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09110_c0 \"Phosphatidylglycerol_synthase_n_C14_1_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09113_c0 \"Phosphatidylglycerol_synthase_n_C18_0_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10264_c0 \"isohexadecanoyl_CDPdiacylglycerol_sn_glycerol_3_phosphate_3_phosphatidyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09108_c0 \"Phosphatidylglycerol_synthase_n_C12_0_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10261_c0 \"isotetradecanoyl_CDPdiacylglycerol_sn_glycerol_3_phosphate_3_phosphatidyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09112_c0 \"Phosphatidylglycerol_synthase_n_C16_1_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09109_c0 \"Phosphatidylglycerol_synthase_n_C14_0_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10262_c0 \"isopentadecanoyl_CDPdiacylglycerol_sn_glycerol_3_phosphate_3_phosphatidyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10260_c0 \"anteisoheptadecanoyl_CDPdiacylglycerol_sn_glycerol_3_phosphate_3_phosphatidyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00929_c0 \"L_Proline_NAD_5_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00931_c0 \"L_Proline_NADP_5_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05316_c0 \"INSt2r_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09687_c0 \"deoxyinosine_transport_in_via_proton_symport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05198_c0 \"Cytidine_ion_coupled_transport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09688_c0 \"deoxyguanosine_transport_in_via_proton_symport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05199_c0 \"Uridine_ion_coupled_transport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05200_c0 \"Thymidine_ion_coupled_transport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09685_c0 \"deoxyuridine_transport_in_via_proton_symport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05318_c0 \"ADNt2r_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05205_c0 \"Deoxycytidine_ion_coupled_transport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01492_c0 \"ATP_D_fructose_1_phosphate_6_phosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02314_c0 \"ATP_D_tagatose_6_phosphate_1_phosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01101_c0 \"3_Phospho_D_glycerate_NAD_2_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05621_c0 \"methanesulfonate_transport_via_ABC_system_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05656_c0 \"sulfoacetate_transport_via_ABC_system_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05585_c0 \"hexanesulfonate_transport_via_ABC_system_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05172_c0 \"Taurine_ABC_transport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05594_c0 \"Isethionate_transport_via_ABC_system_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05552_c0 \"ethanesulfonate_transport_via_ABC_system_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05599_c0 \"cysteate_transport_via_ABC_system_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05512_c0 \"butanesulfonate_transport_via_ABC_system_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05620_c0 \"MOPS_transport_via_ABC_system_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01277_c0 \"D_gluconate_NADP_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05518_c0 \"cellobiose_transport_via_PEP_Pyr_PTS_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05145_c0 \"Orthophosphate_ABC_transport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02944_c0 \"N2_succinyl_L_ornithine_2_oxoglutarate_5_aminotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02331_c0 \"2_Dehydro_3_deoxy_D_octonate_8_phosphate_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05460_c0 \"3_Oxooctodecanoyl_ACP_malonyl_acyl_carrier_protein_C_acyltransferase_decarboxylating_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05346_c0 \"butyryl_acyl_carrier_protein_malonyl_acyl_carrier_protein_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05350_c0 \"hexanoyl_acyl_carrier_protein_malonyl_acyl_carrier_protein_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05396_c0 \"9_methyl_decanoyl_ACP_malonyl_acyl_carrier_protein_C_acyltransferase_decarboxylating_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05363_c0 \"4_methyl_hexanoyl_ACP_malonyl_acyl_carrier_protein_C_acyltransferase_decarboxylating_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05359_c0 \"4_methyl_3_oxo_hexanoyl_ACP_malonyl_acyl_carrier_protein_C_acyltransferase_decarboxylating_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05367_c0 \"6_methyl_octanoyl_ACP_malonyl_acyl_carrier_protein_C_acyltransferase_decarboxylating_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05417_c0 \"6_methyl_heptanoyl_ACP_malonyl_acyl_carrier_protein_C_acyltransferase_decarboxylating_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05421_c0 \"8_methyl_nonanoyl_ACP_malonyl_acyl_carrier_protein_C_acyltransferase_decarboxylating_c0\">\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05392_c0 \"7_methyl_octanoyl_ACP_malonyl_acyl_carrier_protein_C_acyltransferase_decarboxylating_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05345_c0 \"dodecanoyl_acyl_carrier_protein_malonyl_acyl_carrier_protein_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05413_c0 \"4_methyl_pentanoyl_ACP_malonyl_acyl_carrier_protein_C_acyltransferase_decarboxylating_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05348_c0 \"Decanoyl_acyl_carrier_protein_malonyl_acyl_carrier_protein_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05344_c0 \"Tetradecanoyl_acyl_carrier_protein_malonyl_acyl_carrier_protein_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05349_c0 \"acetyl_CoA_acyl_carrier_protein_S_acetyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05388_c0 \"5_methyl_hexanoyl_ACP_malonyl_acyl_carrier_protein_C_acyltransferase_decarboxylating_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05429_c0 \"12_methyl_tridecanoyl_ACP_malonyl_acyl_carrier_protein_C_acyltransferase_decarboxylating_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05371_c0 \"8_methyl_decanoyl_ACP_malonyl_acyl_carrier_protein_C_acyltransferase_decarboxylating_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05347_c0 \"Acyl_acyl_carrier_protein_malonyl_acyl_carrier_protein_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05400_c0 \"11_methyl_dodecanoyl_ACP_malonyl_acyl_carrier_protein_C_acyltransferase_decarboxylating_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05425_c0 \"10_methyl_undecanoyl_ACP_malonyl_acyl_carrier_protein_C_acyltransferase_decarboxylating_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05409_c0 \"2_methylpropionyl_ACP_malonyl_acyl_carrier_protein_C_acyltransferase_decarboxylating_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05404_c0 \"13_methyl_tetra_decanoyl_ACP_malonyl_acyl_carrier_protein_C_acyltransferase_decarboxylating_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05375_c0 \"10_methyl_dodecanoyl_ACP_malonyl_acyl_carrier_protein_C_acyltransferase_decarboxylating_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05379_c0 \"12_methyl_tetra_decanoyl_ACP_malonyl_acyl_carrier_protein_C_acyltransferase_decarboxylating_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05384_c0 \"3_methylbutanoyl_ACP_malonyl_acyl_carrier_protein_C_acyltransferase_decarboxylating_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05343_c0 \"Octanoyl_acyl_carrier_protein_malonyl_acyl_carrier_protein_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn04139_c0 \"2_Octaprenyl_3_methyl_6_methoxy_1_4_benzoquinone__NADPH2_oxygen_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00290_c0 \"Succinyl_CoA_3_oxo_acid_CoA_transferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10199_c0 \"Peptidoglycan_subunit_synthesis_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09200_c0 \"Phosphatidylserine_decarboxylase_n_C16_0_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10235_c0 \"isopentadecanoyl_phosphatidylserine_decarboxylase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09199_c0 \"Phosphatidylserine_decarboxylase_n_C14_1_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10236_c0 \"anteisopentadecanoyl_phosphatidylserine_decarboxylase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09203_c0 \"Phosphatidylserine_decarboxylase_n_C18_1_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10233_c0 \"anteisoheptadecanoyl_phosphatidylserine_decarboxylase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10232_c0 \"isoheptadecanoyl_phosphatidylserine_decarboxylase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09202_c0 \"Phosphatidylserine_decarboxylase_n_C18_0_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09197_c0 \"Phosphatidylserine_decarboxylase_n_C12_0_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10237_c0 \"isohexadecanoyl_phosphatidylserine_decarboxylase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10234_c0 \"isotetradecanoyl_phosphatidylserine_decarboxylase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09198_c0 \"Phosphatidylserine_decarboxylase_n_C14_0_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09201_c0 \"Phosphatidylserine_decarboxylase_n_C16_1_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02937_c0 \"2_Formamido_N1_5_phosphoribosylacetamidine_cyclo_ligase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00783_c0 \"2_Dehydro_3_deoxy_D_galactonate_6_phosphate_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00640_c0 \"GDP_D_mannose_1_phosphate_guanylyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05507_c0 \"arsenite_transporter_via_uniport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05506_c0 \"Arsenate_transporter_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00649_c0 \"O3_Acetyl_L_serine_acetate_lyase_adding_hydrogen_sulfide_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05733_c0 \"cysteine_synthase_Thiosulfate_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10806_c0 \"cytochrome_oxidase_bd_menaquinol_8__2_protons_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10113_c0 \"cytochrome_oxidase_bo3_ubiquinol_8__25_protons_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00288_c0 \"Succinate_acceptor_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01763_c0 \"ATP_L_ribulose_5_phosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01114_c0 \"ATP_D_ribulose_5_phosphotransferase_c0\">\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05153_c0 \"Sulfate_ABC_transport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01446_c0 \"Deoxyguanosine_orthophosphate_ribosyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01649_c0 \"Xanthosine_orthophosphate_ribosyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01138_c0 \"Adenosine_orthophosphate_ribosyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01548_c0 \"guanosine_orthophosphate_ribosyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01985_c0 \"Deoxyinosine_orthophosphate_ribosyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01647_c0 \"Nicotinate_D_ribonucleoside_orthophosphate_ribosyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01358_c0 \"inosine_orthophosphate_ribosyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01859_c0 \"Deoxyadenosine_orthophosphate_ribosyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01646_c0 \"N_Ribosylnicotinamide_orthophosphate_ribosyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01799_c0 \"deoxyuridine_orthophosphate_2_deoxy_D_ribosyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01893_c0 \"2_oxopent_4_enoate_hydratase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00671_c0 \"2_Methyl_3_oxopropanoate_NAD_oxidoreductase_CoA_propanoylating_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00501_c0 \"3_Oxopropanoate_NAD_oxidoreductase_decarboxylating__c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00558_c0 \"D_Glucose_6_phosphate_ketol_isomerase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02380_c0 \"beta_D_Glucose_6_phosphate_ketol_isomerase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01977_c0 \"alpha_D_Glucose_6_phosphate_ketol_isomerase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01406_c0 \"S_Adenosylmethioninamine_putrescine_3_aminopropyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10340_c0 \"isopentadecanoyl_cardiolipin_synthase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10334_c0 \"palmitoyl_cardiolipin_synthase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10337_c0 \"isoheptadecanoyl_cardiolipin_synthase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10338_c0 \"anteisoheptadecanoyl_cardiolipin_synthase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10341_c0 \"anteisopentadecanoyl_cardiolipin_synthase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10335_c0 \"myristoyl_cardiolipin_synthase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10342_c0 \"isohexadecanoyl_cardiolipin_synthase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10339_c0 \"isotetradecanoyl_cardiolipin_synthase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10336_c0 \"stearoyl_cardiolipin_synthase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10122_c0 \"NADH_dehydrogenase_ubiquinone_8__35_protons_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00143_c0 \"S_Adenosyl_L_homocysteine_homocysteinylribohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01021_c0 \"Methylthioadenosine_methylthioribohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00187_c0 \"L_Glutamate_ammonia_ligase_ADP_forming_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03409_c0 \"Undecaprenyl_diphospho_N_acetylmuramoyl_N_acetylglucosamine__c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03407_c0 \"Undecaprenyl_diphospho_N_acetylmuramoyl_N_acetylglucosamine__c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03406_c0 \"Undecaprenyl_diphospho_N_acetylmuramoyl_N_acetylglucosamine__c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00737_c0 \"L_threonine_ammonia_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00165_c0 \"L_serine_ammonia_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01200_c0 \"Sedoheptulose_7_phosphate_D_glyceraldehyde_3_phosphate_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00785_c0 \"D_Fructose_6_phosphate_D_glyceraldehyde_3_phosphate_glycolaldehyde_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05232_c0 \"Ribonucleotide_reductase__ATP_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05236_c0 \"Ribonucleotide_reductase__UTP_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05234_c0 \"Ribonucleotide_reductase__GTP_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05235_c0 \"Ribonucleotide_reductase__CTP_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03841_c0 \"4_amino_4_deoxychorismate_pyruvate_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00193_c0 \"L_Glutamate_racemase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05561_c0 \"fumarate_transport_inout_via_proton_symport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05654_c0 \"succinate_transporter_inout_via_proton_symport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01834_c0 \"R_S_Lactoylglutathione_methylglyoxal_lyase_isomerizing_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00160_c0 \"R_Malate_NAD_oxidoreductase_decarboxylating_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01285_c0 \"R_R_Tartrate_carboxy_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn04143_c0 \"tartrate_dehydrogenase_c0\">\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01847_c0 \"meso_Tartaric_acid_NAD_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03481_c0 \"Arbutin_6_phosphate_glucohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03482_c0 \"Salicin_6_phosphate_glucohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09992_c0 \"Salicin_6_phosphate_glucohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00608_c0 \"6_Phospho_beta_D_glucosyl_1_4_D_gluxose_glucohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08025_c0 \"Arbutin_6_phosphate_glucohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01103_c0 \"3_Phospho_D_glyceroyl_phosphate_phosphohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00227_c0 \"Acetyl_phosphate_phosphohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01073_c0 \"sn_Glycero_3_phosphoethanolamine_glycerophosphohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08669_c0 \"Glycerophosphodiester_phosphodiesterase_Glycerophosphoglycerol_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00758_c0 \"sn_Glycero_3_phosphocholine_glycerophosphohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05175_c0 \"Spermidine_ABC_transport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05163_c0 \"Putrescine_ABC_transport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02971_c0 \"2_Oxo_2_5_dihydrofuran_5_acetate_delta3_delat2_isomerase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00835_c0 \"ATP_inosine_5_phosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00914_c0 \"ATP_inosine_5_phosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00604_c0 \"D_Glucose_6_phosphate_NADP_1_oxoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01975_c0 \"beta_D_Glucose_6_phosphate_NADP_1_oxoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05958_c0 \"S_5_deoxy_D_ribos_5_yl_L_homocysteine_homocysteine_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01678_c0 \"ATP_nucleoside_diphosphate_phosphatransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00117_c0 \"ATP_nucleoside_diphosphate_phosphatransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00839_c0 \"ATP_nucleoside_diphosphate_phosphatransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00409_c0 \"ATP_nucleoside_diphosphate_phosphatransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01673_c0 \"ATP_nucleoside_diphosphate_phosphatransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00515_c0 \"ATP_nucleoside_diphosphate_phosphatransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01512_c0 \"ATP_nucleoside_diphosphate_phosphatransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01353_c0 \"ATP_nucleoside_diphosphate_phosphatransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00237_c0 \"ATP_nucleoside_diphosphate_phosphatransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01332_c0 \"Phosphoenolpyruvate_D_erythrose_4_phosphate_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01858_c0 \"Deoxyadenosine_aminohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01137_c0 \"Adenosine_aminohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01457_c0 \"D_Galacturonate_ketol_isomerase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01080_c0 \"D_Glucuronate_ketol_isomerase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05567_c0 \"Galactitol_transport_via_PEP_Pyr_PTS_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10060_c0 \"NAD_kinase_dTTP_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00077_c0 \"ATP_NAD_2_phosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05683_c0 \"butanoate_transport_in_via_proton_symport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05484_c0 \"acetoacetate_transport_via_proton_symport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn06377_c0 \"glycine_lipoylprotein_oxidoreductase_decarboxylating_and_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05149_c0 \"Manganese_ABC_transport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00206_c0 \"Superoxide_superoxide_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00762_c0 \"Glycerol_NAD_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02933_c0 \"2S_3S_3_hydroxy_2_methylbutanoyl_CoA_NAD_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn04750_c0 \"S_3_hydroxyacyl_CoA_NAD_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03244_c0 \"S_Hydroxydecanoyl_CoA_NAD_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01451_c0 \"S_3_Hydroxybutanoyl_CoA_NAD_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03239_c0 \"S_3_Hydroxyhexadecanoyl_CoA_NAD_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03246_c0 \"S_Hydroxyoctanoyl_CoA_NAD_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03242_c0 \"S_3_Hydroxydodecanoyl_CoA_NAD_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03249_c0 \"S_Hydroxyhexanoyl_CoA_NAD_oxidoreductase_c0\">\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn06777_c0 \"S_3_Hydroxytetradecanoyl_CoA_NAD_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08202_c0 \"CDP_Diacylglycerol_pyrophostatase_n_C16_0_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08203_c0 \"CDP_Diacylglycerol_pyrophostatase_n_C16_1_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08204_c0 \"CDP_Diacylglycerol_pyrophostatase_n_C18_0_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08199_c0 \"CDP_Diacylglycerol_pyrophostatase_n_C12_0_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08205_c0 \"CDP_Diacylglycerol_pyrophostatase_n_C18_1_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08200_c0 \"CDP_Diacylglycerol_pyrophostatase_n_C14_0_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08201_c0 \"CDP_Diacylglycerol_pyrophostatase_n_C14_1_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00100_c0 \"ATP_dephospho_CoA_3_phosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01018_c0 \"Carbamoyl_phosphate_L_aspartate_carbamoyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00806_c0 \"L_Leucine_2_oxoglutarate_aminotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01575_c0 \"L_Isoleucine_2_oxoglutarate_aminotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00903_c0 \"L_Valine_2_oxoglutarate_aminotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10121_c0 \"Nitrate_reductase_Menaquinol_8_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00569_c0 \"ammonium_hydroxide_NADP_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10120_c0 \"Nitrate_reductase_Ubiquinol_8_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01053_c0 \"S_lactaldehyde_NAD_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02341_c0 \"N_R_4_Phosphopantothenoyl_L_cysteine_carboxy_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn06022_c0 \"Acyl_carrier_protein_4_pantetheine_phosphohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09310_c0 \"thiazole_phosphate_synthesis_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03175_c0 \"N_5_Phospho_D_ribosylformimino_5_amino_1__c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00157_c0 \"Acetyl_CoA_formate_C_acetyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn04794_c0 \"Acetyl_CoA_formate_C_acetyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10945_c0 \"EX_pro_L_e_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05638_c0 \"L_proline_transport_in_via_proton_symport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05500_c0 \"L_arabinose_transport_via_proton_symport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05671_c0 \"D_xylose_transport_in_via_proton_symport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05566_c0 \"D_galactose_transport_in_via_proton_symport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01518_c0 \"ATP_deoxyuridine_5_phosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01143_c0 \"ATP_thymidine_5_phosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05649_c0 \"D_serine_transport_inout_via_proton_symport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05582_c0 \"glycine_transport_inout_via_proton_symport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05307_c0 \"SERt2_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05494_c0 \"D_alanine_transport_in_via_proton_symport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00786_c0 \"D_Fructose_1_6_bisphosphate_D_glyceraldehyde_3_phosphate_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01870_c0 \"D_Fructose_1_phosphate_D_glyceraldehyde_3_phosphate_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01334_c0 \"Sedoheptulose_1_7_bisphosphate_D_glyceraldehyde_3_phosphate_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00074_c0 \"NADH_cobIIalamin_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01637_c0 \"N2_Acetyl_L_ornithine_2_oxoglutarate_aminotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05158_c0 \"sn_Glycerol_ABC_transport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00605_c0 \"UDPglucose_D_glucose_6_phosphate_1_alpha_D_glucosyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00379_c0 \"ATP_sulfate_adenylyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09674_c0 \"L_lysine_reversible_transport_via_proton_symport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00689_c0 \"Tetrahydrofolate_L_glutamate_gamma_ligase_ADP_forming_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01603_c0 \"7_8_dihydropteroate_L_glutamate_ligase_ADP_forming_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01210_c0 \"10_Formyltetrahydrofolate_L_glutamate_ligase_ADP_forming_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05164_c0 \"L_Histidine_ABC_transport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01122_c0 \"D_Altronate_hydro_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn04602_c0 \"3_hydroxycinnamate_hydroxylase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02416_c0 \"3_2_hydroxyphenylpropanoate_NADH2_oxygen_c0\">\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn04601_c0 \"3_3_hydroxy_phenylpropionate_hydroxylase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn04928_c0 \"3_dehydro_L_gulonate_6_phosphate_carboxy_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn06510_c0 \"Lauroyl_CoA_acetyl_CoA_C_acyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03248_c0 \"Hexanoyl_CoA_acetyl_CoA_C_acyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00676_c0 \"Propanoyl_CoA_acetyl_CoA_C_acyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02804_c0 \"myristoyl_CoA_acetylCoA_C_myristoyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00874_c0 \"Acetyl_CoA_acetyl_CoA_C_acetyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03243_c0 \"Decanoyl_CoA_acetyl_CoA_C_acyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00178_c0 \"Acetyl_CoA_acetyl_CoA_C_acetyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02680_c0 \"Octanoyl_CoA_acetyl_CoA_C_acyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05596_c0 \"potassium_transport_out_via_proton_antiport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03511_c0 \"ADP_D_glycero_D_manno_heptose_6_epimerase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00262_c0 \"L_Aspartic_acid_oxygen_oxidoreductase_deaminating_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00338_c0 \"L_aspartate_oxidase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02404_c0 \"3_Deoxy_D_manno_octulosonate_8_phosphate_8_phosphohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10114_c0 \"formate_dehydrogenase_quinone_8__2_protons_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01485_c0 \"D_Glucosamine_1_phosphate_1_6_phosphomutase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00704_c0 \"alpha_D_Glucose_1_phosphate_1_6_phosphomutase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00710_c0 \"Orotidine_5_phosphate_carboxy_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02762_c0 \"2_3_Cyclic_CMP_3_nucleotidohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02521_c0 \"2_3_Cyclic_AMP_3_nucleotidohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02522_c0 \"2_3_Cyclic_UMP_3_nucleotidohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03483_c0 \"2_3_Cyclic_GMP_3_nucleotidohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02775_c0 \"S_Adenosyl_L_methionine_precorrin_4_C20_methyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn04046_c0 \"S_adenosyl_L_methionine_cobalt_factor_II_C20_methyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn07589_c0 \"rxn07589_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03491_c0 \"S_Adenosyl_L_methionine_1_precorrin_6Y_C5_15_methyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10117_c0 \"Hydrogenase_Demethylmenaquinone_8__2_protons_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10119_c0 \"Hydrogenase_menaquinone8__2_protons_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10118_c0 \"hydrogenase_ubiquinone_8__2_protons_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08333_c0 \"1_4_dihydroxy_2_naphthoate_octaprenyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn04673_c0 \"rxn04673_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00717_c0 \"Cytosine_aminohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01025_c0 \"5_Methylcytosine_aminohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08713_c0 \"heptosyltransferase_IV_LPS_core_synthesis_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01642_c0 \"4_imidazolone_5_propanoate_amidohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00545_c0 \"ATP_D_fructose_6_phosphate_1_phosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01343_c0 \"ATP_Sedoheptulose_7_phosphate_1_phosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10308_c0 \"myristoyl_lipoteichoic_acid_synthesis_n24__linked__N_acetylglucosamine_substituted_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10311_c0 \"anteisoheptadecanoyl_lipoteichoic_acid_synthesis_n24__linked__N_acetylglucosamine_substituted_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10315_c0 \"isohexadecanoyl_lipoteichoic_acid_synthesis_n24__linked__N_acetylglucosamine_substituted_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10309_c0 \"stearoyl_lipoteichoic_acid_synthesis_n24__linked__N_acetylglucosamine_substituted_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10307_c0 \"palmitoyl_lipoteichoic_acid_synthesis_n24__linked__N_acetylglucosamine_substituted_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10312_c0 \"isotetradecanoyl_lipoteichoic_acid_synthesis_n24__linked__N_acetylglucosamine_substituted_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10310_c0 \"isoheptadecanoyl_lipoteichoic_acid_synthesis_n24__linked__N_acetylglucosamine_substituted_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10314_c0 \"anteisopentadecanoyl_lipoteichoic_acid_synthesis_n24__linked__N_acetylglucosamine_substituted_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08040_c0 \"UDP_N_acetylglucosamine_undecaprenylphosphate_N_acetylglucosamine__1_phosphate_transferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10313_c0 \"isopentadecanoyl_lipoteichoic_acid_synthesis_n24__linked__N_acetylglucosamine_substituted_c0\">\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05249_c0 \"FACOAL150ISO_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05250_c0 \"FACOAL160ISO_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05252_c0 \"FACOAL170ISO_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09449_c0 \"fatty_acid__CoA_ligase_octadecanoate_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05247_c0 \"FACOAL140ISO_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05248_c0 \"FACOAL150anteiso_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05251_c0 \"FACOAL170anteiso_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05736_c0 \"fatty_acid__CoA_ligase_tetradecanoate_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00947_c0 \"Palmitate_CoA_ligase_AMP_forming_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09448_c0 \"fatty_acid__CoA_ligase_octadecenoate_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09450_c0 \"fatty_acid__CoA_ligase_hexadecenoate__peroxisomal_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02897_c0 \"Nicotinate_nucleotide_dimethylbenzimidazole_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn12147_c0 \"rxn12147_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03931_c0 \"rxn03931_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00330_c0 \"L_Malate_glyoxylate_lyase_CoA_acetylating_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03916_c0 \"D_glycero_D_manno_hepose_1_phosphate_adenyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03856_c0 \"Galactitol_1_phosphate_NAD_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn04674_c0 \"rxn04674_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03397_c0 \"UDP_L_rhamnose_flavonol_3_O_D_glucoside_L_rhamnosyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10094_c0 \"S_adenosylmethione_2_demethylmenaquinone_methyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn13782_c0 \"Protein_biosynthesis_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00910_c0 \"5_methyltetrahydrofolate_NADP_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn04954_c0 \"5_methyltetrahydrofolate_NAD_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02286_c0 \"UDP_N_acetylmuramate_L_alanine_ligase_ADP_forming_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03159_c0 \"UDP_2_3_bis3_hydroxytetradecanoyl_beta_D_glucosamine_2_3_bis_3__c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01682_c0 \"1S_2R_1_C_indol_3_ylglycerol_3_phosphate_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01964_c0 \"L_Serine_hydro_lyase_adding_indoleglycerol_phosphate_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00474_c0 \"L_Serine_hydro_lyase_adding_indoleglycerol_phosphate_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02474_c0 \"5_amino_6_5_phosphoribitylaminouracil_NADP_1_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01292_c0 \"L_Arabinose_ketol_isomerase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05563_c0 \"Glucose_6_phosphate_transport_via_phosphate_antiport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10188_c0 \"Fucose_1_phosphate_transport_via_phosphate_antiport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10187_c0 \"Mannose_6_phosphate_transport_via_phosphate_antiport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01709_c0 \"Propane_1_2_diol_hydro_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00898_c0 \"2_3_Dihydroxy_3_methylbutanoate_hydro_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03437_c0 \"R_2_3_Dihydroxy_3_methylpentanoate_hydro_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01069_c0 \"O_Phospho_L_homoserine_phospho_lyase_adding_water_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03446_c0 \"O_Phospho_4_hydroxy_L_threonine_phospho_lyase_adding_water_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01997_c0 \"dTDPglucose_4_6_hydro_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00555_c0 \"L_Glutamine_D_fructose_6_phosphate_aminotransferase_hexose_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00260_c0 \"L_Aspartate_2_oxoglutarate_aminotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02339_c0 \"4_Hydroxy_L_glutamate_2_oxoglutarate_aminotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03885_c0 \"D_mannonate_hydro_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02484_c0 \"ATP_4_amino_5_hydroxymethyl_2_methylpyrimidine_5_phosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03108_c0 \"ATP_4_amino_2_methyl_5_phosphomethylpyrimidine_phosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03137_c0 \"10_Formyltetrahydrofolate_5_phosphoribosyl_5_amino_4__c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00832_c0 \"IMP_1_2_hydrolase_decyclizing_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08709_c0 \"LPS_heptose_kinase_II_LPS_core_synthesis_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00527_c0 \"L_Tyrosine_2_oxoglutarate_aminotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01270_c0 \"L_Aspartate_2_oxoglutarate_aminotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00493_c0 \"L_Phenylalanine_2_oxoglutarate_aminotransferase_c0\">\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02320_c0 \"5_Amino_2_oxopentanoate_2_oxoglutarate_aminotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn04052_c0 \"precorrin_8X_methylmutase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03512_c0 \"Precorrin_8X_11_12_methylmutase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00355_c0 \"UTP_alpha_D_hexose_1_phosphate_uridylyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn13783_c0 \"DNA_replication_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08126_c0 \"Amylomaltase_maltotriose_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08129_c0 \"Amylomaltase_maltohexaose_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08127_c0 \"Amylomaltase_maltotetraose_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08128_c0 \"Amylomaltase_maltopentaose_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn04045_c0 \"sirohydrochlorin_cobalt_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01390_c0 \"ATP_L_rhamnulose_1_phosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02161_c0 \"ATP_L_rhamnulose_1_phosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00540_c0 \"4_hydroxy_2_oxopentanoate_pyruvate_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn12224_c0 \"2_octaprenyl_6_methoxyphenol_hydroxylase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09188_c0 \"Proline_dehydrogenase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02359_c0 \"trans_4_Hydroxy_L_proline_NAD_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01974_c0 \"LL_2_6_Diaminoheptanedioate_2_epimerase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01274_c0 \"S_2_Hydroxyacylglutathione_hydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02008_c0 \"UDP_N_acetylmuramoyl_L_alanine_D_glutamate_ligaseADP_forming_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01986_c0 \"2_Deoxy_D_ribose_1_phosphate_1_5_phosphomutase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00778_c0 \"D_Ribose_1_5_phosphomutase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00166_c0 \"D_serine_ammonia_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02155_c0 \"ATP_nicotinamide_nucleotide_adenylyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00915_c0 \"GMP_pyrophosphate_phosphoribosyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00836_c0 \"IMP_pyrophosphate_phosphoribosyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01544_c0 \"XMP_pyrophosphate_phosphoribosyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00139_c0 \"AMP_pyrophosphate_phosphoribosyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00461_c0 \"Phosphoenolpyruvate_UDP_N_acetyl_D_glucosamine_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00748_c0 \"Glycerone_phosphate_phospho_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01094_c0 \"2_3_dihydro_2_3_dihydroxybenzoate_NAD_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00283_c0 \"L_Alanine_racemase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00137_c0 \"Adenosine_3_5_bisphosphate_32_phosphohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08179_c0 \"Biotin_sulfoxide_reductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08178_c0 \"Biotin_sulfoxide_reductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03643_c0 \"D_arabino_3_Hexulose_6_phosphate_formaldehyde_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00441_c0 \"2_Oxoglutarate_Thiamin_diphosphate_2_oxidoreductasedecarboxylating_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02376_c0 \"3_Carboxy_1_hydroxypropyl_ThPP_lipoamde_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00938_c0 \"Nicotinamide_amidohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09177_c0 \"phosphopantothenate_cysteine_ligase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn12512_c0 \"R_4_Phosphopantothenate_L_cysteine_ligase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn12405_c0 \"transport_of_r_3_hydroxybutanoate_extraorganism_cytosolpassive_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn07587_c0 \"rxn07587_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02507_c0 \"1_2_Carboxyphenylamino_1_deoxy_D_ribulose_5_phosphate_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03901_c0 \"Undecaprenyl_diphosphate_phosphohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03933_c0 \"UDP_N_acetylglucosamine_N_acetylmuramyl_pentapeptidepyrophosphoryl_undecaprenol_N_acetylglucosamine_transferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03408_c0 \"UDP_N_acetylglucosamine_N_acetylmuramyl_pentapeptidepyrophosphoryl_undecaprenol_N_acetylglucosamine_transferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00669_c0 \"Propanoate_CoA_ligase_ADP_forming_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05202_c0 \"Xanthine_ion_coupled_transport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00601_c0 \"succinyl_CoA_L_arginine_N2_succinyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05226_c0 \"Glucose_phosphotransferase_PTS_system_c0\">\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01333_c0 \"Sedoheptulose_7_phosphate_D_glyceraldehyde_3_phosphate_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05560_c0 \"D_fructose_transport_via_PEP_Pyr_PTS_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08291_c0 \"D_Amino_acid_dehydrogenase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn06865_c0 \"Endotoxin_Synthesis_lauroyl_transferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00303_c0 \"ATP_GTP_3_pyrophosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01434_c0 \"L_Citrulline_L_aspartate_ligase_AMP_forming_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00693_c0 \"5_Methyltetrahydrofolate_L_homocysteine_S_methyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00122_c0 \"ATP_FMN_adenylyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00392_c0 \"ATP_riboflavin_5_phosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01116_c0 \"D_Ribulose_5_phosphate_3_epimerase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00470_c0 \"L_Ornithine_carboxy_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03908_c0 \"ATP__4_Cytidine_5_diphospho_2_C_methyl_D_erythritol_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn06526_c0 \"NADPH_protein_disulfide_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05207_c0 \"Namalate_symporter_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05605_c0 \"L_malate_transport_in_via_proton_symport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05493_c0 \"2_oxoglutarate_transport_in_via_proton_symport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02213_c0 \"3_Dehydroquinate_hydro_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02200_c0 \"2_Amino_4_hydroxy_6_hydroxymethyl_7_8_dihydropteridine_4__c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02201_c0 \"2_Amino_4_hydroxy_6_hydroxymethyl_7_8_dihydropteridine__c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00616_c0 \"sn_Glycerol_3_phosphate_acceptor_2_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08557_c0 \"glycerol_3_phosphate_dehydrogenase_menaquinone_8_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08556_c0 \"glycerol_3_phosphate_dehydrogenase_ubiquinone_8_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08558_c0 \"glycerol_3_phosphate_dehydrogenase_demethylmenaquinone_8_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03062_c0 \"3_Isopropylmalate_NAD_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01973_c0 \"N_Succinyl_LL_2_6_diaminoheptanedioate_amidohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01171_c0 \"alpha_D_Glucose_1_epimerase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01388_c0 \"isocitrate_hydro_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00974_c0 \"citrate_hydro_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01775_c0 \"D_Mannonate_NAD_5_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01791_c0 \"R_Pantoate_beta_alanine_ligase_AMP_forming_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05578_c0 \"glycerol_3_phosphate_transport_in_via_proton_symport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00222_c0 \"1_4_beta_D_Glucan_glucohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00020_c0 \"beta_D_Glucoside_glucohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09978_c0 \"beta_glucosidase_methyl_alpha_D_glucoside_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09979_c0 \"beta_glucosidase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03978_c0 \"ammonia_ferricytochrome_c_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01519_c0 \"dUTP_nucleotidohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00029_c0 \"5_Aminolevulinate_hydro_lyaseadding_5_aminolevulinate_and_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03060_c0 \"2_Hydroxybutane_1_2_3_tricarboxylate_hydro_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00242_c0 \"Guanosine_3_5_bisdiphosphate_3_pyrophosphohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn07588_c0 \"rxn07588_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn04413_c0 \"rxn04413_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03537_c0 \"Adenosyl_cobinamide_phosphate_guanyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03536_c0 \"Adenosyl_cobinamide_kinase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05647_c0 \"salicin_transport_via_PEP_Pyr_PTS_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05501_c0 \"arbutin_transport_via_PEP_Pyr_PTS_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08615_c0 \"glycogen_synthase_ADPGlc_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03919_c0 \"D_glycero_D_manno_heptose_1_7_bisphosphate_phosphatase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn12510_c0 \"ATP_pantothenate_4_phosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05176_c0 \"Thiosulfate_ABC_transport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00161_c0 \"S_Malate_NADP_oxidoreductaseoxaloacetate_decarboxylating_c0\">\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01857_c0 \"D_Altronate_NAD_3_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05231_c0 \"Ribonucleotide_reductase__ADP_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn06076_c0 \"2_Deoxycytidine_diphosphate_oxidized_thioredoxin_2_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05233_c0 \"Ribonucleotide_reductase__GDP_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn06075_c0 \"2_Deoxyuridine_5_diphosphate_oxidized_thioredoxin_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00808_c0 \"ATP_D_galactose_1_phosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08900_c0 \"Malate_dehydrogenase_ubiquinone_8_as_acceptor_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08901_c0 \"Malate_dehydrogenase_menaquinone_8_as_acceptor_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00935_c0 \"S_Malate_acceptor_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01477_c0 \"6_Phospho_D_gluconate_hydro_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05496_c0 \"L_alanine_transport_in_via_proton_symport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03435_c0 \"R_2_3_Dihydroxy_3_methylpentanoate_NADP_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02187_c0 \"2_Acetolactate_methylmutase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02186_c0 \"2_3_Dihydroxy_3_methylbutanoate_NADP_oxidoreductase_isomerizing_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03436_c0 \"S_2_Aceto_2_hydroxybutanoate_NADP_oxidoreductase_isomerizing_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03068_c0 \"R_2_3_Dihydroxy_3_methylbutanoate_NADP_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01790_c0 \"R_Pantoate_NADP_2_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00584_c0 \"cis_1_2_dihydroxycyclohexa_3_5_diene_1_carboxylate_NAD_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00085_c0 \"L_Glutamate_NADP_oxidoreductase_transaminating_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn11702_c0 \"2_succinyl_5_enolpyruvyl_6_hydroxy_3_cyclohexene_1_carboxylate_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00251_c0 \"Orthophosphate_oxaloacetate_carboxyl_lyase_phosphorylating_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00295_c0 \"UDP_N_acetyl_D_glucosamine_4_epimerase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00214_c0 \"UDPglucose_4_epimerase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00265_c0 \"Citrate_oxaloacetate_lyase_pro_3S_CH2COO____acetate_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05317_c0 \"DADNt2_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01368_c0 \"Cytidine_aminohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01800_c0 \"Deoxycytidine_aminohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01219_c0 \"ATP_CMP_phosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00364_c0 \"ATP_CMP_phosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00707_c0 \"ITP_cytidine_5_phosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03514_c0 \"S_adenosyl_L_methionine_precorrin_4_C11_methyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn04048_c0 \"cobalt_precorrin_4_methyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10160_c0 \"D_galactonate_transport_via_proton_symport__reversible_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01127_c0 \"ATP_AMP_phosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10052_c0 \"adenylate_kinase_Inorganic_triphosphate_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00097_c0 \"ATP_AMP_phosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10181_c0 \"NMN_permease_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00291_c0 \"N_succinyl_L_glutamate_amidohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00340_c0 \"L_Aspartate_ammonia_ligase_AMP_forming_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00772_c0 \"ATP_D_ribose_5_phosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01987_c0 \"Deoxyribokinase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00410_c0 \"UTP_ammonia_ligaseADP_forming_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00412_c0 \"UTP_ammonia_ligaseADP_forming_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00544_c0 \"rxn00544_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00011_c0 \"pyruvate_thiamin_diphosphate_acetaldehydetransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05680_c0 \"Xanthosine_transport_via_proton_symport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02792_c0 \"5_Glutamyl_peptide_amino_acid_5_glutamyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00350_c0 \"glutathione_hydralase_periplasmic_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02791_c0 \"5_Glutamyl_peptide_amino_acid_5_glutamyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05221_c0 \"Na_proline_symport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00568_c0 \"ammonium_hydroxide_NADP_oxidoreductase_c0\">\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10182_c0 \"putrescineornithine_antiporter_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05687_c0 \"Putrescine_transport_in_via_proton_symport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02405_c0 \"CTP_3_deoxy_D_manno_octulosonate_cytidylyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00395_c0 \"L_Arginine_iminohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00171_c0 \"acetaldehyde_NAD_oxidoreductase_CoA_acetylating_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01000_c0 \"Prephenate_hydro_lyase_decarboxylating_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00675_c0 \"Propinol_adenylate_CoA_ligase_AMP_forming_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00175_c0 \"Acetate_CoA_ligase_AMP_forming_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00986_c0 \"Propanoate_CoA_ligase_AMP_forming_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03630_c0 \"Taurine__2_oxoglutarate_O2_oxidoreductase_sulfite_forming_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01867_c0 \"p_cumic_alcohol_NAD_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01868_c0 \"p_Cumic_alcohol_NADP_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02305_c0 \"2_Methyl_4_amino_5_hydroxymethylpyrimidine_diphosphate_4_methyl_5__c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03384_c0 \"Uroporphyrinogen_I_carboxy_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02288_c0 \"Uroporphyrinogen_III_carboxy_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05551_c0 \"ethanolamine_transport_inout_via_proton_symport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01507_c0 \"2_Deoxyadenosine_5_monophosphate_phosphohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02400_c0 \"Nicotinate_D_ribonucleotide_phosphohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01670_c0 \"Nicotinamide_ribonucleotide_phosphohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00363_c0 \"Cytidine_5_monophosphate_phosphohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00708_c0 \"Uridine_5_monophosphate_phosphohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01218_c0 \"2_Deoxycytidine_5_monophosphate_phosphohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01521_c0 \"5_nucleotidase_dUMP_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01445_c0 \"2_Deoxyguanosine_5_monophosphate_phosphohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00913_c0 \"Guanosine_5_monophosphate_phosphohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01145_c0 \"Thymidylate_5_phosphohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00132_c0 \"Adenosine_5_monophosphate_phosphohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01961_c0 \"Xanthosine_5_phosphate_phosphohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00831_c0 \"Inosine_5_monophosphate_phosphohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03932_c0 \"ATP_5_dehydro_2_deoxy_D_gluconate_6_phosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08712_c0 \"heptosyltransferase_III_LPS_core_synthesis_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10116_c0 \"Glucose_dehydrogenase_ubiquinone_8_as_acceptor_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00239_c0 \"ATP_dGMP_phosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09562_c0 \"guanylate_kinase_GMP_dATP_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01509_c0 \"ATP_dGMP_phosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00612_c0 \"sn_Glycerol_3_phosphate_NADP_2_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00611_c0 \"sn_Glycerol_3_phosphate_NAD_2_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00711_c0 \"UMP_pyrophosphate_phosphoribosyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn04113_c0 \"isopentenyl_diphosphate_NADP_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn04996_c0 \"dimethyallyl_diphosphate_NADP_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08756_c0 \"1_hydroxy_2_methyl_2_E_butenyl_4_diphosphate_reductase_ipdp_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08352_c0 \"1_hydroxy_2_methyl_2_E_butenyl_4_diphosphate_reductase_dmpp_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn06023_c0 \"CoA_apo_acyl_carrier_protein_pantetheinephosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00007_c0 \"alpha_alpha_Trehalose_glucohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05024_c0 \"rxn05024_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02898_c0 \"O_Succinylbenzoyl_CoA_1_4_dihydroxy_2_naphthoate_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02449_c0 \"Guanosine_3_diphosphate_5_triphosphate_5_phosphohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00146_c0 \"R_Lactate_ferricytochrome_c_2_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08783_c0 \"D_lactate_dehydrogenase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00500_c0 \"R_Lactate_NAD_oxidoreductase_c0\">\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00763_c0 \"Glycerol_NAD_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00543_c0 \"Ethanol_NAD_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10174_c0 \"maltohexaose_transport_via_ABC_system_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05608_c0 \"Maltotriose_transport_via_ABC_system_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05170_c0 \"Maltose_ABC_transport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05607_c0 \"maltose_transport_via_PEP_Pyr_PTS_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00138_c0 \"Deamino_NAD_ammonia_ligase_AMP_forming_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02831_c0 \"O_Succinylbenzoate_CoA_ligase_AMP_forming_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03136_c0 \"1_5_Phosphoribosyl_5_amino_4_N_succinocarboxamide_imidazole_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00800_c0 \"N6_1_2_DicarboxyethylAMP_AMP_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05165_c0 \"L_Proline_ABC_transport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05181_c0 \"Betaine_ABC_transport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00216_c0 \"ATP_D_glucose_6_phosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01169_c0 \"ATP_D_glucose_6_phosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08194_c0 \"cobIalamin_adenosyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05029_c0 \"ATP_cobinamide_Cobeta_adenosyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03535_c0 \"ATP_cobIyrinic_acid_a_c_diamide_Cobeta_adenosyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01093_c0 \"ATP_2_3_dihydroxybenzoate_adenylyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00988_c0 \"Acetoacetate_CoA_ligase_AMP_forming_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02346_c0 \"rxn02346_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01990_c0 \"5_Dehydro_4_deoxy_D_glucarate_tartronate_semialdehyde_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn04082_c0 \"L_ribulose_5_phosphate_4_epimerase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05617_c0 \"mannitol_transport_via_PEP_Pyr_PTS_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00606_c0 \"alpha_alpha_Trehalose_6_phosphate_phosphoglucohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02373_c0 \"L_Glutamate_5_semialdehyde_NADP_5_oxidoreductase_phosphorylationg_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05581_c0 \"glycerol_transport_inout_via_diffusion_reversible_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00726_c0 \"Chorismate_pyruvate_lyase_amino_accepting_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00727_c0 \"Chorismate_pyruvate_lyase_amino_accepting_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02319_c0 \"ATP_L_fuculose_1_phosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02177_c0 \"Isochorismate_pyruvate_hydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03147_c0 \"1_5_Phosphoribosyl_5_amino_4_carboxyimidazole_L_aspartate_ligase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00095_c0 \"P1_P4_Bis5_nucleosyl_tetraphosphate_nucleotidebisphosphohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01211_c0 \"5_10_Methenyltetrahydrofolate_5_hydrolasedecyclizing_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00907_c0 \"5_10_methylenetetrahydrofolate_NADP_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03884_c0 \"2_dehydro_3_deoxy_D_gluconate_6_phosphate_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00328_c0 \"4_Hydroxy_2_oxoglutarate_glyoxylate_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09180_c0 \"protoporphyrinogen_oxidase_anaerobic_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01602_c0 \"Dihydrofolate_NADP_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00686_c0 \"5_6_7_8_Tetrahydrofolate_NADP_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00670_c0 \"acetyl_CoA_phosphate_acetyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00173_c0 \"Acetyl_CoA_orthophosphate_acetyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02782_c0 \"2_5_Dihydro_5_oxofuran_2_acetate_lyase_decyclizing_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00371_c0 \"Formate_NAD_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03644_c0 \"rxn03644_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00539_c0 \"Ethanolamine_ammonia_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00184_c0 \"L_Glutamate_NADP_oxidoreductase_deaminating_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08619_c0 \"glucosyltransferase_II_LPS_core_synthesis_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01241_c0 \"Dihydrolipoamide_NAD_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn06493_c0 \"dihydrolipoylprotein_NAD_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01522_c0 \"xanthine_NAD_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01297_c0 \"Xanthine_NAD_oxidoreductase_c0\">\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01117_c0 \"D_Arabinose_5_phosphate_ketol_isomerase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09289_c0 \"dTDP_4_amino_4_6_dideoxy_D_glucose_acetyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00776_c0 \"Uracil_hydro_lyase_adding_D_ribose_5_phosphate_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09296_c0 \"hydrogen_peroxide_reductase_thioredoxin_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01255_c0 \"5_O_1_Carboxyvinyl_3_phosphoshikimate_phosphate_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03194_c0 \"S_2_Aceto_2_hydroxybutanoate_pyruvate_lyase_carboxylating_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02185_c0 \"2_Acetolactate_pyruvate_lyase_carboxylating_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01360_c0 \"S_Dihydroorotate_oxygen_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08335_c0 \"dihydoorotic_acid_dehydrogenase_quinone8_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08336_c0 \"dihydroorotic_acid_menaquinone_8_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02927_c0 \"N2_succinyl_L_arginine_iminohydrolase_decarboxylating_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03958_c0 \"1_Deoxy_D_xylulose_5_phosphate_isomeroreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn12500_c0 \"tricarballylate_dehydrogenase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01322_c0 \"N_Acetylneuraminate_pyruvate_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02007_c0 \"2_4_63_5_Pentahydroxycyclohexanone_hydro_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01280_c0 \"R_Glycerate_NAD_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01281_c0 \"R_Glycerate_NADP_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02287_c0 \"S_Adenosyl_L_methionine_uroporphyrin_III_C_methyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02774_c0 \"S_Adenosyl_L_methionine_uroporphyrin_III_C_methyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02475_c0 \"2_5_Diamino_6_hydroxy_4_5_phosphoribosylamino_pyrimidine_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01304_c0 \"Succinyl_CoA_L_homoserine_O_succinyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00147_c0 \"ATP_pyruvate_water_phosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09167_c0 \"pyruvate_oxidase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05312_c0 \"PIt6_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn11268_c0 \"phosphate_ABC_transporter_permease_protein_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00646_c0 \"L_Glutamate_L_cysteine_gamma_ligase_ADP_forming_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08708_c0 \"LPS_heptose_kinase_I_LPS_core_synthesis_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09240_c0 \"Sulfate_adenyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05156_c0 \"L_Ornithine_ABC_transport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05151_c0 \"L_Lysine_ABC_transport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03886_c0 \"D_sorbitol_6_phosphate_NAD_2_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn06673_c0 \"Acetyl_CoA_carbon_dioxide_ligase_ADP_forming_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn13784_c0 \"RNA_transcription_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10184_c0 \"D_sorbitol_transport_via_PEP_Pyr_PTS_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00245_c0 \"R_R_Tartrate_hydro_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05571_c0 \"D_gluconate_transport_via_proton_symport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn04704_c0 \"coproporphyrinogen_III_S_adenosyl_L_methionine_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01629_c0 \"S_4_Amino_5_oxopentanoate_4_5_aminomutase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00552_c0 \"D_Glucosamine_6_phosphate_ketol_isomerasedeaminating_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn12146_c0 \"rxn12146_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01123_c0 \"ATP_2_dehydro_3_deoxy_D_gluconate_6_phosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05313_c0 \"PIt8_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00966_c0 \"chorismate_pyruvate_lyase_4_hydroxybenzoate_forming_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03084_c0 \"5_Phosphoribosylformylglycinamide_L_glutamine_amido_ligase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02342_c0 \"2_alpha_Hydroxyethylthiamine_diphosphate_lipoamide_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00292_c0 \"UDP_N_acetyl_D_glucosamine_2_epimerase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00297_c0 \"UDP_N_acetyl_D_glucosamine_2_epimerase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05147_c0 \"D_Glucose_ABC_transport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05173_c0 \"L_Arabinose_ABC_transport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05466_c0 \"Ammonia_transport_via_diffusion_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08707_c0 \"Heme_O_synthase_c0\">\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00927_c0 \"Adenosine_ribohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01299_c0 \"Inosine_ribohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01226_c0 \"Guanosine_ribohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01545_c0 \"Xanthosine_ribohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02173_c0 \"D_Galactonate_hydro_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10161_c0 \"Octadecanoate_transport_via_proton_symport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10162_c0 \"Hexadecanoate_transport_via_proton_symport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10163_c0 \"Tetradecanoate_transport_via_proton_symport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05155_c0 \"L_Glutamine_ABC_transport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02476_c0 \"Phosphoenolpyruvate_3_phosphoshikimate_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00745_c0 \"Phosphoenolpyruvate_glycerone_phosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00781_c0 \"D_Glyceraldehyde_3_phosphate_NAD_oxidoreductasephosphorylating_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01331_c0 \"D_erythrose_4_phosphate_NAD_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01133_c0 \"Acetyl_CoA_maltose_O_acetyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00973_c0 \"citrate_hydro_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00642_c0 \"GDPmannose_4_6_hydro_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00775_c0 \"ADPribose_ribophosphohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02011_c0 \"UDP_N_acetylmuramoyl_L_alanyl_D_glutamate_meso_2_6__c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01044_c0 \"D_Xylose_ketol_isomerase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00223_c0 \"xylose_isomerase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05239_c0 \"adenosine_3_5_bisphosphate_sulfite_oxidized_thioredoxin_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05256_c0 \"APSPTi_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05201_c0 \"Hypoxanthine_ion_coupled_transport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00546_c0 \"D_Mannitol_1_phosphate_NAD_5_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01895_c0 \"2_hydroxy_6_ketonona_2_4_dienedioic_acid_hydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn04604_c0 \"2_hydroxy_6_ketononotrienedioate_hydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02789_c0 \"2_Isopropylmalate_hydro_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00830_c0 \"Isopentenyl_diphosphate_delta3_delta2_isomerase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10042_c0 \"ATP_synthase_four_protons_for_one_ATP_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01520_c0 \"5_10_Methylenetetrahydrofolate_dUMP_C_methyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00189_c0 \"L_Glutamine_amidohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00322_c0 \"L_Lysine_carboxy_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01403_c0 \"gamma_L_Glutamyl_L_cysteinyl_glycine_spermidine_ligase_ADP_forming_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00856_c0 \"putrescine_2_oxoglutarate_aminotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00179_c0 \"ATP_L_glutamate_5_phosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03991_c0 \"nitric_oxide__NADPH2_oxygen_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03990_c0 \"nitric_oxide__NADPH2_oxygen_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01465_c0 \"S_Dihydroorotate_amidohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00863_c0 \"L_Histidinal_NAD_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02159_c0 \"L_Histidinol_NAD_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03150_c0 \"alpha_ribazole_5_phosphate_phosphatase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10168_c0 \"Potassium_ABC_transporter_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00423_c0 \"serine_O_acetyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03975_c0 \"FMNH2_NADP_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03974_c0 \"FMNH2_NAD_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00818_c0 \"Raffinose_galactohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03838_c0 \"rxn03838_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00817_c0 \"alpha_D_Glucoside_glucohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02596_c0 \"a_galactosidase_stachyose_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00615_c0 \"ATP_glycerol_3_phosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10180_c0 \"Pantothenate_sodium_symporter_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05555_c0 \"iron_II_transport_via_ABC_system_c0\">\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00056_c0 \"FeII_oxygen_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00212_c0 \"UDPglucose_pyrophosphohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn04385_c0 \"L_threonine_O_3_phosphate_carboxy_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02914_c0 \"3_Phosphoserine_2_oxoglutarate_aminotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03445_c0 \"O_Phospho_4_hydroxy_L_threonine_2_oxoglutarate_aminotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01300_c0 \"ATP_L_homoserine_O_phosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00950_c0 \"Cystathionine_L_homocysteine_lyase_deaminating_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00566_c0 \"L_Cysteine_L_homocysteine_lyase_deaminating_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00621_c0 \"CTP_sn_glycerol_3_phosphate_cytidylyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01313_c0 \"NADH_6_7_dihydropteridine_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01314_c0 \"NADPH_6_7_dihydropteridine_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn06979_c0 \"rxn06979_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn11544_c0 \"Hydrogenobyrinate___Hydrogenobyrinate_a_c_diamide_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01146_c0 \"Thymidine_orthophosphate_deoxyribosyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01192_c0 \"Protocatechuate_oxygen_3_4_oxidoreductase_decyclizing_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10133_c0 \"3_phenylpropionate_transport_via_proton_symport__reversible_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn07845_c0 \"D_glucarate_hydro_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01989_c0 \"D_Glucarate_hydro_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03898_c0 \"rxn03898_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03897_c0 \"benzoate_1_2_dioxygenase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02504_c0 \"2_Amino_4_hydroxy_6_D_erythro_1_2_3_trihydroxypropyl_7_8__c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01672_c0 \"dCTP_aminohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00407_c0 \"CTP_aminohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10473_c0 \"chlorideion_transport_out_via_diffusion_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00904_c0 \"L_Valine_pyruvate_aminotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03918_c0 \"D_glycero_D_manno_heptose_7_phosphate_kinase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00912_c0 \"5_10_Methylenetetrahydrofolate_3_methyl_2_oxobutanoate_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05618_c0 \"manganese_transport_in_via_proton_symport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00692_c0 \"5_10_Methylenetetrahydrofolate_glycine_hydroxymethyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05559_c0 \"formate_transport_in_via_proton_symport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00992_c0 \"R_3_Hydroxybutanoate_NAD_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00002_c0 \"Urea_1_carboxylate_amidohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00300_c0 \"GTP_7_8_8_9_dihydrolase_pyrophosphate_forming_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08345_c0 \"2_5_diketo_D_gluconate_reductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00509_c0 \"Succinate_semialdehyde_NADP_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01269_c0 \"Prephenate_NADP_oxidoreductasedecarboxylating_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01268_c0 \"Prephenate_NAD_oxidoreductasedecarboxylating_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00205_c0 \"Glutathione_hydrogen_peroxide_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00790_c0 \"5_Phosphoribosylamine_pyrophosphate_phosphoribosyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05569_c0 \"D_glucosamine_transport_via_PEP_Pyr_PTS_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05574_c0 \"glucuronate_transport_in_via_proton_symport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05673_c0 \"galacturonate_transport_in_via_proton_symport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00060_c0 \"Porphobilinogen_ammonia_lyase_polymerizing_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00006_c0 \"hydrogen_peroxide_hydrogen_peroxide_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10150_c0 \"Citrate_transport_via_succinate_antiport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02473_c0 \"D_erythro_1_Imidazol_4_ylglycerol_3_phosphate_hydro_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00834_c0 \"IMP_NAD_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05293_c0 \"MECDPDH_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03080_c0 \"6_7_Dimethyl_8_1_D_ribityllumazine_6_7_dimethyl_8_1_D_ribityl_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05150_c0 \"Zinc_ABC_transport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01761_c0 \"L_Rhamnose_ketol_isomerase_c0\">\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02297_c0 \"6_Carboxyhexanoyl_CoA_L_alanine_C_carboxyhexanoyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02429_c0 \"ATP_2_dehydro_3_deoxy_galactonokinase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01639_c0 \"N_Formimino_L_glutamate_formiminohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05040_c0 \"3_4_Dihydroxy_2_butanone_4_phosphate_synthase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01204_c0 \"4_Aminobutanoate_2_oxoglutarate_aminotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00105_c0 \"ATP_nicotinamide_nucleotide_adenylyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05612_c0 \"melibiose_transport_in_via_symport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00799_c0 \"S_Malate_hydro_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00313_c0 \"meso_2_6_Diaminoheptanedioate_carboxy_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02369_c0 \"2_Carboxy_2_5_dihydro_5_oxofuran_2_acetate_lyase_decyclizing_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00086_c0 \"glutathione_NADP_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08583_c0 \"galactosyltransferase_I_LPS_core_synthesis_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00837_c0 \"NADH_guanosine_5_phosphate_oxidoreductasedeaminating_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00634_c0 \"D_Glucitol_NAD_2_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08618_c0 \"glucosyltransferase_I_LPS_core_synthesis_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00256_c0 \"Citrate_oxaloacetate_lyase_pro_3S_CH2COO____acetyl_CoA_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02503_c0 \"ATP_2_amino_4_hydroxy_6_hydroxymethyl_7_8_dihydropteridine_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn06848_c0 \"Endotoxin_Synthesis_myristoyl_transferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00131_c0 \"AMP_phosphoribohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00285_c0 \"Succinate_CoA_ligase_ADP_forming_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00473_c0 \"L_Tryotophan_indole_lyase_deaminating_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01484_c0 \"N_Acetyl_D_glucosamine_6_phosphate_amidohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09997_c0 \"4_amino_5_hydroxymethyl_2_methylpyrimidine_synthetase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00770_c0 \"ATP_D_ribose_5_phosphate_pyrophosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00192_c0 \"Acetyl_CoA_L_glutamate_N_acetyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05938_c0 \"rxn05938_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00211_c0 \"UDPglucose_NAD_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00588_c0 \"Catechol_oxygen_1_2_oxidoreductasedecyclizing_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02832_c0 \"O_succinylbenzoate_CoA_synthase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02263_c0 \"L_Fucose_ketol_isomerase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00289_c0 \"2S_3R_3_Hydroxybutane_1_2_3_tricarboxylate_pyruvate_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03393_c0 \"Octaprenyl_hydroxybenzoate_decarboxylase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn04783_c0 \"glycinamide_ribonucleotide_transformylase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02085_c0 \"4_5_Dihydro_4_oxo_5_imidazolepropanoate_hydro_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01739_c0 \"ATP_shikimate_3_phosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00347_c0 \"L_Aspartate_ammonia_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05206_c0 \"Potassium_uptake_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00102_c0 \"Carbonic_acid_hydro_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn06591_c0 \"L_glutamate_semialdehyde__NADP_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01967_c0 \"beta_D_Glucose_1_phosphate_1_6_phosphomutase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00126_c0 \"ATP_L_methione_S_adenosyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00414_c0 \"Carbon_dioxide_L_glutamine_amido_ligase_ADP_forming__c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn06937_c0 \"L_Glutamate_tRNAGlu_ligase_AMP_forming_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05937_c0 \"Ferredoxin_NADP_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00980_c0 \"2_Phosphoglycolate_phosphohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00159_c0 \"S_Malate_NADP_oxidoreductaseoxaloacetate_decarboxylating_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02508_c0 \"N_5_Phospho_beta_D_ribosylanthranilate_ketol_isomerase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00127_c0 \"S_Adenosyl_L_methionine_carboxy_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05300_c0 \"THRt2_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01644_c0 \"L_Aspartate_4_semialdehyde_hydro_lyase_adding_pyruvate_and_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn04016_c0 \"S_adenosyl_L_methionine_E_prop_1_ene_1_2_3_tricarboxylate_c0\">\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05516_c0 \"cadmium_transport_out_via_ABC_system_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10343_c0 \"Mercury_Hg2_ABC_transporter_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10344_c0 \"Lead_Pb2_ABC_transporter_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02938_c0 \"1_5_Phospho_D_ribosyl_5_amino_4_imidazolecarboxylate_carboxy_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00224_c0 \"Protoporphyrin_ferro_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05514_c0 \"calcium_transport_inout_via_proton_antiporter_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05527_c0 \"cytosine_transport_in_via_proton_symport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00792_c0 \"Biotin_CoA_ligase_AMP_forming_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03904_c0 \"UDPMurAcoyl_L_Ala_D_gamma_Glu_L_Lys_D_Ala_D_Ala_undecaprenyl__c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03903_c0 \"UDPMurAcoyl_L_Ala_D_gamma_Glu_L_Lys_D_Ala_D_Ala_undecaprenyl__c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02465_c0 \"N_Acetyl_L_glutamate_5_semialdehyde_NADP_5_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08711_c0 \"heptosyltransferase_II_LPS_core_synthesis_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03513_c0 \"S_Adenosyl_L_methionine_precorrin_3B_C17_methyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn04047_c0 \"precorrin_3B_C17_methyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00549_c0 \"D_Fructose_1_6_bisphosphate_1_phosphohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05681_c0 \"2_dehydro_3_deoxy_D_gluconate_transport_via_proton_symport__reversible_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01871_c0 \"acetyl_CoA_enzyme_N6_dihydrolipoyllysine_S_acetyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01257_c0 \"chorismate_L_glutamine_aminotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05292_c0 \"FE3t4_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01265_c0 \"Nicotinate_D_ribonucleotide_pyrophosphate_phosphoribosyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01740_c0 \"Shikimate_NADP_5_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00416_c0 \"L_aspartate_L_glutamine_amido_ligase_AMP_forming_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01620_c0 \"L_Fuculose_1_phosphate_lactaldehyde_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01404_c0 \"gamma_L_Glutamyl_L_cysteinyl_glycine_spermidine_amidase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03394_c0 \"rxn03394_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05154_c0 \"L_Arginine_ABC_transport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05188_c0 \"Ferrichrome_ABC_transport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00274_c0 \"Succinyl_CoA_glycine_C_succinyl_transferasedecarboxylating_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00838_c0 \"IMP_L_aspartate_ligase_GDP_forming_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00065_c0 \"ATP_pyrophosphate_lyase_cyclizing_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05651_c0 \"sulfate_transport_in_via_proton_symport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00695_c0 \"ATP_alpha_D_glucose_1_phosphate_adenyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00337_c0 \"ATP_L_aspartate_4_phosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00777_c0 \"D_Ribose_5_phosphate_ketol_isomerase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05602_c0 \"L_lactate_reversible_transport_via_proton_symport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01366_c0 \"Uridine_orthophosphate_ribosyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01106_c0 \"2_Phospho_D_glycerate_2_3_phosphomutase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00342_c0 \"L_Asparagine_amidohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00784_c0 \"2_Deoxy_D_ribose_5_phosphate_acetaldehyde_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00361_c0 \"ATP_adenylylsulfate_3_phosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn07492_c0 \"L_ascorbate_6_phosphate_lactonase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03538_c0 \"Adenosylcobalamin_5_phosphate_synthase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01480_c0 \"3_Hydroxy_2_methylpropanoate_NAD_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01951_c0 \"ATP_N_acyl_D_mannosamine_6_phosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03181_c0 \"ATP_2_3_2_3_tetrakis3_hydroxytetradecanoyl_D_glucosaminyl_beta__c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05485_c0 \"N_Acetyl_D_glucosamine_transport_via_PEP_Pyr_PTS_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00119_c0 \"ATP_nucleoside_phosphate_phosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01517_c0 \"ATP_dTMP_phosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn04070_c0 \"pyridoxine_5_phosphate_synthase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02004_c0 \"Trehalose_6_phosphate_phosphohydrolase_c0\">\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01966_c0 \"alpha_alpha_Trehalose_orthophosphate_beta_D_glucosyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01132_c0 \"Maltose_orthophosphate_1_beta_D_glucosyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05162_c0 \"D_Galactose_ABC_transport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03004_c0 \"10_Formyltetrahydrofolate_5_phosphoribosylglycinamide_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02277_c0 \"7_8_Diaminononanoate_carbon_dioxide_cyclo_ligase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10147_c0 \"Cob1alamin_transport_via_ABC_system_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00691_c0 \"10_Formyltetrahydrofolate_amidohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05663_c0 \"L_tryptophan_transport_in_via_proton_symport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02264_c0 \"Hydroxymethylbilane_hydro_lyasecyclizing_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08257_c0 \"crotonobetainyl_CoA__carnitine_CoA_transferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00623_c0 \"hydrogen_sulfide_NADP_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00452_c0 \"S_Adenosyl_L_methionine_L_homocysteine_S_methyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05627_c0 \"nitrate_transport_in_via_proton_symport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05625_c0 \"nitrite_transport_in_via_proton_symport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05209_c0 \"Proton_sodium_antiport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03031_c0 \"Succinyl_CoA_2_3_4_5_tetrahydropyridine_2_6_dicarboxylate_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00148_c0 \"ATP_pyruvate_O2_phosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05197_c0 \"Uracil_ion_coupled_transport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn06600_c0 \"S_aminomethyldihydrolipoylprotein_6S_tetrahydrofolate_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10169_c0 \"Lactose_transport_via_proton_symport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01352_c0 \"dGTP_triphosphohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00022_c0 \"alpha_D_Glucoside_glucohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05289_c0 \"TRDR_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01851_c0 \"4_aminobutanal_NAD_1_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00867_c0 \"L_Histidine_ammonia_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03540_c0 \"adenosylcobyric_acid_synthase_glutamine_hydrolysing_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00213_c0 \"UTP_alpha_D_glucose_1_phosphate_uridylyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10131_c0 \"arginineornithine_antiporter_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00221_c0 \"D_Glucose_1_phosphate_phosphohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00789_c0 \"1_5_Phospho_D_ribosyl_ATP_pyrophosphate_phosphoribosyl_transferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00508_c0 \"Succinate_semialdehyde_NAD_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn04386_c0 \"rxn04386_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn10481_c0 \"Copper_transport_via_ABC_system_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05528_c0 \"Copper_export_via_ATPase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn06077_c0 \"L_methionine_oxidized_thioredoxin_S_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02895_c0 \"5_Phospho_D_ribosylamine_glycine_ligase_ADP_forming_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01115_c0 \"6_Phospho_D_gluconate_NADP_2_oxidoreductase_decarboxylating_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02312_c0 \"S_Adenosyl_L_methionine_8_amino_7_oxononanoate_aminotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00438_c0 \"ATP_thiamin_phosphate_phosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00679_c0 \"2_Methylcitrate_oxaloacetate_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03951_c0 \"NAD_dependent_threonine_4_phosphate_dehydrogenase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn12206_c0 \"malonate_decarboxylase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01102_c0 \"ATP_R_glycerate_3_phosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02144_c0 \"4_Carboxymethylbut_3_en_4_olide_enol_lactonohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01643_c0 \"L_Aspartate_4_semialdehyde_NADP_oxidoreductase_phosphorylating_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01275_c0 \"ATP_D_Gluconate_6_phosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02005_c0 \"trehalose_transport_via_PEP_Pyr_PTS_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01653_c0 \"5_Formyltetrahydrofolate_cyclo_ligase_ADP_forming_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01671_c0 \"ATP_N_ribosylnicotinamide_5_phosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01362_c0 \"Orotidine_5_phosphate_pyrophosphate_phosphoribosyltransferase_c0\">\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02929_c0 \"2_3_4_5_Tetrahydrodipicolinate_NADP_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02402_c0 \"Nicotinate_nucleotide_pyrophosphate_phosphoribosyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn09944_c0 \"methylmalonate_semialdehyde_dehydrogenase_propanol_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00351_c0 \"gamma_L_Glutamyl_L_cysteine_glycine_ligase_ADP_forming_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02811_c0 \"3_Isopropylmalate_hydro_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05610_c0 \"D_mannose_transport_via_PEP_Pyr_PTS_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01019_c0 \"Carbamoyl_phosphate_L_ornithine_carbamoyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03917_c0 \"sedoheptulose_7_phosphate_isomerase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03135_c0 \"Imidazole_glycerol_3_phosphate_synthase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00469_c0 \"N2_Acetyl_L_ornithine_amidohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05655_c0 \"sucrose_transport_via_PEP_Pyr_PTS_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00791_c0 \"N_5_Phospho_D_ribosylanthranilate_pyrophosphate_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02303_c0 \"Coproporphyrinogen_oxygen_oxidoreductasedecarboxylating_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00756_c0 \"Choline_sulfate_sulfohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn06672_c0 \"biotin_carboxyl_carrier_protein_carbon_dioxide_ligase_ADP_forming_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03087_c0 \"N_Succinyl_L_2_6_diaminoheptanedioate_2_ocoglytarate_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01329_c0 \"D_Mannose_6_phosphate_1_6_phosphomutase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05177_c0 \"Thiamin_ABC_transport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00247_c0 \"ATP_oxaloacetate_carboxy_lyase_transphosphorylating_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01917_c0 \"ATP_N_acetyl_L_glutamate_5_phosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01100_c0 \"ATP_3_phospho_D_glycerate_1_phosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn04603_c0 \"2_3_dihydroxycinnamate_1_2_dioxygenase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03038_c0 \"2_3_dihydroxypheylpropionate_1_2_dioxygenase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01879_c0 \"Propane_1_2_diol_NAD_1_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02939_c0 \"4_phospho_D_erythronate_NAD_2_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01015_c0 \"Hydroxypyruvate_ketol_isomerase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02175_c0 \"ATP_pantetheine_4_phosphate_adenylyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01538_c0 \"ATP_thiamine_phosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03075_c0 \"ATP_4_methyl_5_2_hydroxyethyl_thiazole_2_phosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00747_c0 \"D_Glyceraldehyde_3_phosphate_ketol_isomerase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01872_c0 \"succinyl_CoA_enzyme_N6_dihydrolipoyllysine_S_succinyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03893_c0 \"Hydroxybenzoate_octaprenyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02285_c0 \"UDP_N_acetylmuramate_NADP_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn08710_c0 \"heptosyltransferase_I_LPS_core_synthesis_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05564_c0 \"4_aminobutyrate_transport_in_via_proton_symport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01068_c0 \"L_Threonine_NAD_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00114_c0 \"ATP_carbamate_phosphotransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00420_c0 \"L_O_Phosphoserine_phosphohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00001_c0 \"Pyrophosphate_phosphohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01476_c0 \"6_Phospho_D_glucono_1_5_lactone_lactonohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02003_c0 \"dTDP_6_deoxy_L_mannose_NADP_4_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn07438_c0 \"peptide_methionine_thioredoxin_disulfide_S_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01621_c0 \"L_Rhamnulose_1_phosphate_lactaldehyde_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn02321_c0 \"L_ribulose_5_phosphate_3_epimerase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn03907_c0 \"CTP__2_C_Methyl_D_erythritol_4_phosphate_cytidylyltransferase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00787_c0 \"D_Tagatose_1_6_bisphosphate_triosephosphate_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn01289_c0 \"L_Arabinose_NAD_1_oxidoreductase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00851_c0 \"D_AlanineD_Alanine_ligase_ADP_forming_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00858_c0 \"Agmatine_amidinohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00346_c0 \"L_Aspartate_1_carboxy_lyase_c0\">\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00101_c0 \"Urea_amidohydrolase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05301_c0 \"TYRt6_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn00336_c0 \"Isocitrate_glyoxylate_lyase_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05217_c0 \"Aspartate_H_symport_c0\">\n",
      "Encoding LOWER_BOUND and UPPER_BOUND in KineticLaw is discouraged, use fbc:fluxBounds instead: <Reaction rxn05297_c0 \"GLUt2_c0\">\n",
      "IOPub message rate exceeded.\n",
      "The notebook server will temporarily stop sending output\n",
      "to the client in order to avoid crashing it.\n",
      "To change this limit, set the config variable\n",
      "`--NotebookApp.iopub_msg_rate_limit`.\n",
      "\n",
      "Current values:\n",
      "NotebookApp.iopub_msg_rate_limit=1000.0 (msgs/sec)\n",
      "NotebookApp.rate_limit_window=3.0 (secs)\n",
      "\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n",
      "Encoding OBJECTIVE_COEFFICIENT in KineticLaw is discouraged, use fbc:fluxObjective instead: EX_cpd00151_e0: cpd00151_e0 <=> cpd00151_b\n"
     ]
    },
    {
     "data": {
      "text/plain": [
       "{'EX_ca2_e': 1000,\n",
       " 'EX_cbl1_e': 1000,\n",
       " 'EX_cl_e': 1000,\n",
       " 'EX_cobalt2_e': 1000,\n",
       " 'EX_cu2_e': 1000,\n",
       " 'EX_fe2_e': 1000,\n",
       " 'EX_fe3_e': 1000,\n",
       " 'EX_glc__D_e': 1.0,\n",
       " 'EX_h_e': 1000,\n",
       " 'EX_h2o_e': 1000,\n",
       " 'EX_k_e': 1000,\n",
       " 'EX_mg2_e': 1000,\n",
       " 'EX_mn2_e': 1000,\n",
       " 'EX_mobd_e': 1000,\n",
       " 'EX_na1_e': 1000,\n",
       " 'EX_nh4_e': 1000,\n",
       " 'EX_ni2_e': 1000,\n",
       " 'EX_o2_e': 1000,\n",
       " 'EX_pi_e': 1000,\n",
       " 'EX_sel_e': 1000,\n",
       " 'EX_slnt_e': 1000,\n",
       " 'EX_so4_e': 1000,\n",
       " 'EX_tungs_e': 1000,\n",
       " 'EX_zn2_e': 1000}"
      ]
     },
     "execution_count": 31,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "''' TODO: USE CITROBACTER AS A CONTROL\n",
    "    PROBLEM: KBase and BiGG database IDs are not compatible!\n",
    "    Have to figure out how to do the mapping.. so skip this for now. \n",
    "    load the curated Citrobacter model (Cuepas et al. 2016)\n",
    "    use this model as a positive control to compare flux distribution.'''\n",
    "citrobacter_model = cobra.io.read_sbml_model('C.sedlakii_MAP_gapfill.sbml')\n",
    "citro_max_growth = citrobacter_model.slim_optimize()\n",
    "''' give citrobacter the same media as base'''\n",
    "base_model.medium\n",
    "#citrobacter_model.medium = minimal_medium(base_model, max_growth)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 32,
   "metadata": {},
   "outputs": [],
   "source": [
    "''' NOTE: This code uses BiGG model IDs (BiGG namespace).'''\n",
    "def generate_models(basemodel):\n",
    "    ''' Cit- model growing on glucose (no citrate flux)'''\n",
    "    glucose_model = basemodel.copy()\n",
    "    ''' Cit+ model on DM0 with citrate flux'''\n",
    "    DM0citrate_model = basemodel.copy()\n",
    "    ## set glucose to zero, and citrate to 10.0.\n",
    "    DM0 = DM0citrate_model.medium\n",
    "    DM0['EX_glc__D_e'] = 0.0\n",
    "    DM0['EX_cit_e'] = 10.0\n",
    "    DM0citrate_model.medium = DM0\n",
    "\n",
    "    assert 'EX_cit_e' in DM0citrate_model.medium\n",
    "    assert 'EX_glc__D_e' not in DM0citrate_model.medium\n",
    "    assert 'EX_glc__D_e' in glucose_model.medium\n",
    "    assert 'EX_cit_e' not in glucose_model.medium\n",
    "\n",
    "    ''' Cit+ model on DM25 with citrate flux'''\n",
    "    DM25citrate_model = DM0citrate_model.copy()\n",
    "    DM25 = DM25citrate_model.medium\n",
    "    DM25['EX_glc__D_e'] = 1.0\n",
    "    DM25['EX_cit_e'] = 10.0\n",
    "    DM25citrate_model.medium = DM25\n",
    "\n",
    "    ''' now make the fermentation (no O2 influx) models.'''\n",
    "    glucose_fermentation_model = glucose_model.copy()\n",
    "    noO2_media = glucose_fermentation_model.medium\n",
    "    noO2_media['EX_o2_e'] = 0.0\n",
    "    glucose_fermentation_model.medium = noO2_media\n",
    "    \n",
    "    DM0citrate_fermentation_model = DM0citrate_model.copy()\n",
    "    DM0_noO2_media = DM0citrate_fermentation_model.medium\n",
    "    DM0_noO2_media['EX_o2_e'] = 0.0\n",
    "    DM0citrate_fermentation_model.medium = DM0_noO2_media\n",
    "    \n",
    "    DM25citrate_fermentation_model = DM25citrate_model.copy()\n",
    "    DM25_noO2_media = DM25citrate_fermentation_model.medium\n",
    "    DM25_noO2_media['EX_o2_e'] = 0.0\n",
    "    DM25citrate_fermentation_model.medium = DM25_noO2_media\n",
    "    \n",
    "    \n",
    "    return (glucose_model, DM0citrate_model, DM25citrate_model,glucose_fermentation_model, DM0citrate_fermentation_model, DM25citrate_fermentation_model)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 33,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Read LP format model from file /tmp/tmpbta6s0w5.lp\n",
      "Reading time = 0.01 seconds\n",
      ": 1951 rows, 5496 columns, 21258 nonzeros\n",
      "Read LP format model from file /tmp/tmpf9w1u5jh.lp\n",
      "Reading time = 0.01 seconds\n",
      ": 1951 rows, 5496 columns, 21258 nonzeros\n",
      "Read LP format model from file /tmp/tmptvwnolrt.lp\n",
      "Reading time = 0.01 seconds\n",
      ": 1951 rows, 5496 columns, 21258 nonzeros\n",
      "Read LP format model from file /tmp/tmpv9i2o308.lp\n",
      "Reading time = 0.01 seconds\n",
      ": 1951 rows, 5496 columns, 21258 nonzeros\n",
      "Read LP format model from file /tmp/tmpd3nfujru.lp\n",
      "Reading time = 0.01 seconds\n",
      ": 1951 rows, 5496 columns, 21258 nonzeros\n",
      "Read LP format model from file /tmp/tmp100n_xds.lp\n",
      "Reading time = 0.01 seconds\n",
      ": 1951 rows, 5496 columns, 21258 nonzeros\n",
      "Read LP format model from file /tmp/tmpckc_ld0p.lp\n",
      "Reading time = 0.01 seconds\n",
      ": 1951 rows, 5498 columns, 21264 nonzeros\n",
      "Read LP format model from file /tmp/tmpivombthh.lp\n",
      "Reading time = 0.01 seconds\n",
      ": 1951 rows, 5498 columns, 21264 nonzeros\n",
      "Read LP format model from file /tmp/tmptqt9rvu8.lp\n",
      "Reading time = 0.01 seconds\n",
      ": 1951 rows, 5498 columns, 21264 nonzeros\n",
      "Read LP format model from file /tmp/tmp73d8cc1y.lp\n",
      "Reading time = 0.01 seconds\n",
      ": 1951 rows, 5498 columns, 21264 nonzeros\n",
      "Read LP format model from file /tmp/tmpv81kwrj0.lp\n",
      "Reading time = 0.01 seconds\n",
      ": 1951 rows, 5498 columns, 21264 nonzeros\n",
      "Read LP format model from file /tmp/tmpm28mjmod.lp\n",
      "Reading time = 0.01 seconds\n",
      ": 1951 rows, 5498 columns, 21264 nonzeros\n"
     ]
    }
   ],
   "source": [
    "old_cit_minus_model, old_DM0_cit_plus_model, old_DM25_cit_plus_model,old_cit_minus_ferment_model, old_DM0_cit_plus_ferment_model, old_DM25_cit_plus_ferment_model = generate_models(base_model)\n",
    "\n",
    "new_cit_minus_model, new_DM0_cit_plus_model, new_DM25_cit_plus_model,new_cit_minus_ferment_model, new_DM0_cit_plus_ferment_model, new_DM25_cit_plus_ferment_model = generate_models(maeA_model)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 34,
   "metadata": {},
   "outputs": [],
   "source": [
    "old_cit_minus_solution = old_cit_minus_model.optimize()\n",
    "old_DM0_cit_plus_solution = old_DM0_cit_plus_model.optimize()\n",
    "old_DM25_cit_plus_solution = old_DM25_cit_plus_model.optimize()\n",
    "\n",
    "new_cit_minus_solution = new_cit_minus_model.optimize()\n",
    "new_DM0_cit_plus_solution = new_DM0_cit_plus_model.optimize()\n",
    "new_DM25_cit_plus_solution = new_DM25_cit_plus_model.optimize()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 35,
   "metadata": {},
   "outputs": [],
   "source": [
    "old_cit_minus_ferment_solution = old_cit_minus_ferment_model.optimize()\n",
    "old_DM0_cit_plus_ferment_solution = old_DM0_cit_plus_ferment_model.optimize()\n",
    "old_DM25_cit_plus_ferment_solution = old_DM25_cit_plus_ferment_model.optimize()\n",
    "\n",
    "new_cit_minus_ferment_solution = new_cit_minus_ferment_model.optimize()\n",
    "new_DM0_cit_plus_ferment_solution = new_DM0_cit_plus_ferment_model.optimize()\n",
    "new_DM25_cit_plus_ferment_solution = new_DM25_cit_plus_ferment_model.optimize()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 36,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "0.027637195158161695\n",
      "0.17702624054210184\n",
      "0.21463732887791137\n"
     ]
    }
   ],
   "source": [
    "''' all fermentation solutions are dead.'''\n",
    "print(new_cit_minus_ferment_solution.objective_value)\n",
    "print(new_DM0_cit_plus_ferment_solution.objective_value)\n",
    "print(new_DM25_cit_plus_ferment_solution.objective_value)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 37,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "0.09955465387061918\n",
      "0.731175540186676\n",
      "0.8365993776414389\n"
     ]
    }
   ],
   "source": [
    "print(new_cit_minus_solution.objective_value)\n",
    "print(new_DM0_cit_plus_solution.objective_value)\n",
    "print(new_DM25_cit_plus_solution.objective_value)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 13,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "0.0\n",
      "0.0\n",
      "0.03860084816545495\n"
     ]
    }
   ],
   "source": [
    "''' no predicted flux through Citrate Lyase.'''\n",
    "print(new_cit_minus_solution['CITL'])\n",
    "print(new_DM25_cit_plus_solution['CITL'])\n",
    "print(new_DM0_cit_plus_solution['CITL'])"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 14,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "0.0\n",
      "0.0\n",
      "0.0\n"
     ]
    }
   ],
   "source": [
    "''' This is the canonical rxn catalyzed by MaeA'''\n",
    "print(old_cit_minus_solution['ME1'])\n",
    "print(old_DM25_cit_plus_solution['ME1'])\n",
    "print(old_DM0_cit_plus_solution['ME1'])"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 15,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "0.0\n",
      "0.5416178638638556\n",
      "4.354100850130325\n"
     ]
    }
   ],
   "source": [
    "print(old_cit_minus_solution['ME2'])\n",
    "print(old_DM25_cit_plus_solution['ME2'])\n",
    "print(old_DM0_cit_plus_solution['ME2'])"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 16,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "0.0\n",
      "0.0\n",
      "0.0\n"
     ]
    }
   ],
   "source": [
    "''' This is the canonical rxn catalyzed by MaeA'''\n",
    "print(new_cit_minus_solution['ME1'])\n",
    "print(new_DM25_cit_plus_solution['ME1'])\n",
    "print(new_DM0_cit_plus_solution['ME1'])"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 17,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "0.0\n",
      "0.5416178638638556\n",
      "4.354100850130325\n"
     ]
    }
   ],
   "source": [
    "print(old_cit_minus_solution['ME2'])\n",
    "print(old_DM25_cit_plus_solution['ME2'])\n",
    "print(old_DM0_cit_plus_solution['ME2'])"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 45,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "0.0"
      ]
     },
     "execution_count": 45,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "old_DM25_cit_plus_model.reactions.OAADC.x"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 18,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "0.0\n",
      "0.0\n",
      "0.0\n"
     ]
    }
   ],
   "source": [
    "print(new_cit_minus_solution['MAEA'])\n",
    "print(new_DM25_cit_plus_solution['MAEA'])\n",
    "print(new_DM0_cit_plus_solution['MAEA'])"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 19,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "                        PERCENT  FLUX                   REACTION_STRING                  \n",
      "RXN_STAT  ID                                                                             \n",
      "PRODUCING GLCptspp       79.6        1                 glc__D_p + pep_c --> g6p_c + pyr_c\n",
      "          PYK            19.4    0.244              adp_c + h_c + pep_c --> atp_c + pyr_c\n",
      "          CYSTL          1.06   0.0133    cyst__L_c + h2o_c --> hcys__L_c + nh4_c + pyr_c\n",
      "CONSUMING PDH            78.7    0.989  coa_c + nad_c + pyr_c --> accoa_c + co2_c + na...\n",
      "          ACLS             12    0.151              h_c + 2.0 pyr_c --> alac__S_c + co2_c\n",
      "          VPAMTr_copy1      4   0.0503             3mob_c + ala__L_c <=> pyr_c + val__L_c\n",
      "          DHDPS          2.55   0.0321     aspsa_c + pyr_c --> 23dhdp_c + 2.0 h2o_c + h_c\n",
      "          ACHBS             2   0.0251         2obut_c + h_c + pyr_c --> 2ahbut_c + co2_c\n",
      "************************\n",
      "                        PERCENT  FLUX                   REACTION_STRING                  \n",
      "RXN_STAT  ID                                                                             \n",
      "PRODUCING OAADC          69.7     3.95                      h_c + oaa_c --> co2_c + pyr_c\n",
      "          GLCptspp       17.7        1                 glc__D_p + pep_c --> g6p_c + pyr_c\n",
      "          ME2            9.57    0.542      mal__L_c + nadp_c --> co2_c + nadph_c + pyr_c\n",
      "          CYSTL          2.24    0.127    cyst__L_c + h2o_c --> hcys__L_c + nh4_c + pyr_c\n",
      "          ANS           0.826   0.0468  chor_c + gln__L_c --> anth_c + glu__L_c + h_c ...\n",
      "CONSUMING PDH            55.7     3.15  coa_c + nad_c + pyr_c --> accoa_c + co2_c + na...\n",
      "          ACLS           25.4     1.44              h_c + 2.0 pyr_c --> alac__S_c + co2_c\n",
      "          VPAMTr_copy1   8.45    0.478             3mob_c + ala__L_c <=> pyr_c + val__L_c\n",
      "          DHDPS          5.39    0.305     aspsa_c + pyr_c --> 23dhdp_c + 2.0 h2o_c + h_c\n",
      "          ACHBS          4.22    0.239         2obut_c + h_c + pyr_c --> 2ahbut_c + co2_c\n",
      "          TRPAS2        0.826   0.0468      h2o_c + trp__L_c <=> indole_c + nh4_c + pyr_c\n",
      "************************\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "cobra/core/summary/summary.py:206 \u001b[1;31mUserWarning\u001b[0m: Setting float_format to anything other than None will cause nan to be present in the output.\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "                        PERCENT  FLUX                   REACTION_STRING                  \n",
      "RXN_STAT  ID                                                                             \n",
      "PRODUCING ME2            97.5     4.35      mal__L_c + nadp_c --> co2_c + nadph_c + pyr_c\n",
      "          CYSTL          2.48    0.111    cyst__L_c + h2o_c --> hcys__L_c + nh4_c + pyr_c\n",
      "CONSUMING PDH            49.7     2.22  coa_c + nad_c + pyr_c --> accoa_c + co2_c + na...\n",
      "          ACLS           28.1     1.26              h_c + 2.0 pyr_c --> alac__S_c + co2_c\n",
      "          VPAMTr_copy1   9.35    0.418             3mob_c + ala__L_c <=> pyr_c + val__L_c\n",
      "          DHDPS          5.97    0.266     aspsa_c + pyr_c --> 23dhdp_c + 2.0 h2o_c + h_c\n",
      "          ACHBS          4.67    0.209         2obut_c + h_c + pyr_c --> 2ahbut_c + co2_c\n",
      "          PFL            1.76   0.0785                  coa_c + pyr_c --> accoa_c + for_c\n"
     ]
    }
   ],
   "source": [
    "''' look at pyruvate in the old models'''\n",
    "print(old_cit_minus_model.metabolites.pyr_c.summary())\n",
    "print('************************')\n",
    "print(old_DM25_cit_plus_model.metabolites.pyr_c.summary())\n",
    "print('************************')\n",
    "print(old_DM0_cit_plus_model.metabolites.pyr_c.summary())"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 20,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "                        PERCENT  FLUX                   REACTION_STRING                  \n",
      "RXN_STAT  ID                                                                             \n",
      "PRODUCING GLCptspp       79.6        1                 glc__D_p + pep_c --> g6p_c + pyr_c\n",
      "          DHAPT          19.4    0.244                   dha_c + pep_c --> dhap_c + pyr_c\n",
      "          CYSTL          1.06   0.0133    cyst__L_c + h2o_c --> hcys__L_c + nh4_c + pyr_c\n",
      "CONSUMING PDH            78.7    0.989  coa_c + nad_c + pyr_c --> accoa_c + co2_c + na...\n",
      "          ACLS             12    0.151              h_c + 2.0 pyr_c --> alac__S_c + co2_c\n",
      "          VPAMTr_copy1      4   0.0503             3mob_c + ala__L_c <=> pyr_c + val__L_c\n",
      "          DHDPS          2.55   0.0321     aspsa_c + pyr_c --> 23dhdp_c + 2.0 h2o_c + h_c\n",
      "          ACHBS             2   0.0251         2obut_c + h_c + pyr_c --> 2ahbut_c + co2_c\n",
      "************************\n",
      "                        PERCENT  FLUX                   REACTION_STRING                  \n",
      "RXN_STAT  ID                                                                             \n",
      "PRODUCING ME2            79.3     4.49      mal__L_c + nadp_c --> co2_c + nadph_c + pyr_c\n",
      "          GLCptspp       17.7        1                 glc__D_p + pep_c --> g6p_c + pyr_c\n",
      "          CYSTL          2.24    0.127    cyst__L_c + h2o_c --> hcys__L_c + nh4_c + pyr_c\n",
      "          ANS           0.826   0.0468  chor_c + gln__L_c --> anth_c + glu__L_c + h_c ...\n",
      "CONSUMING PDH            55.7     3.15  coa_c + nad_c + pyr_c --> accoa_c + co2_c + na...\n",
      "          ACLS           25.4     1.44              h_c + 2.0 pyr_c --> alac__S_c + co2_c\n",
      "          VPAMTr_copy1   8.48     0.48             3mob_c + ala__L_c <=> pyr_c + val__L_c\n",
      "          DHDPS          5.39    0.305     aspsa_c + pyr_c --> 23dhdp_c + 2.0 h2o_c + h_c\n",
      "          ACHBS          4.22    0.239         2obut_c + h_c + pyr_c --> 2ahbut_c + co2_c\n",
      "          TRPAS2        0.826   0.0468      h2o_c + trp__L_c <=> indole_c + nh4_c + pyr_c\n",
      "************************\n",
      "                        PERCENT  FLUX                   REACTION_STRING                  \n",
      "RXN_STAT  ID                                                                             \n",
      "PRODUCING ME2            97.5     4.35      mal__L_c + nadp_c --> co2_c + nadph_c + pyr_c\n",
      "          CYSTL          2.48    0.111    cyst__L_c + h2o_c --> hcys__L_c + nh4_c + pyr_c\n",
      "CONSUMING PDH            50.1     2.24  coa_c + nad_c + pyr_c --> accoa_c + co2_c + na...\n",
      "          ACLS           28.1     1.26              h_c + 2.0 pyr_c --> alac__S_c + co2_c\n",
      "          VPAMTr_copy1   9.35    0.418             3mob_c + ala__L_c <=> pyr_c + val__L_c\n",
      "          DHDPS          5.97    0.266     aspsa_c + pyr_c --> 23dhdp_c + 2.0 h2o_c + h_c\n",
      "          ACHBS          4.67    0.209         2obut_c + h_c + pyr_c --> 2ahbut_c + co2_c\n",
      "          PFL            1.76   0.0785                  coa_c + pyr_c --> accoa_c + for_c\n"
     ]
    }
   ],
   "source": [
    "''' look at pyruvate in the models'''\n",
    "print(new_cit_minus_model.metabolites.pyr_c.summary())\n",
    "print('************************')\n",
    "print(new_DM25_cit_plus_model.metabolites.pyr_c.summary())\n",
    "print('************************')\n",
    "print(new_DM0_cit_plus_model.metabolites.pyr_c.summary())"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 21,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Read LP format model from file /tmp/tmpfn75j1a8.lp\n",
      "Reading time = 0.01 seconds\n",
      ": 1951 rows, 5498 columns, 21264 nonzeros\n",
      "Read LP format model from file /tmp/tmplkjxamzx.lp\n",
      "Reading time = 0.01 seconds\n",
      ": 1951 rows, 5498 columns, 21264 nonzeros\n"
     ]
    }
   ],
   "source": [
    "''' let us look for reactions which increase flux in response to higher glucose input,\n",
    "    but decrease flux in response to higher citrate input, or vice-versa.\n",
    "    These would be candidate reactions for antagonistic pleiotropy.'''\n",
    "\n",
    "## increment glucose or citrate influx from 10.0 to 11.0.\n",
    "## note that result is somewhat sensitive to +/- epsilon: MAEA is pleiotropic for -e but not +e.\n",
    "epsilon = 0.01\n",
    "\n",
    "glucose_model_dx = new_cit_minus_model.copy()\n",
    "citrate_model_dy = new_DM0_cit_plus_model.copy()\n",
    "DM25_dx = new_cit_minus_model.medium\n",
    "DM0_dy = new_DM0_cit_plus_model.medium\n",
    "DM25_dx['EX_glc__D_e'] = DM25_dx['EX_glc__D_e'] - epsilon\n",
    "DM0_dy['EX_cit_e'] = DM0_dy['EX_cit_e'] - epsilon\n",
    "glucose_model_dx.medium = DM25_dx\n",
    "citrate_model_dy.medium = DM0_dy\n",
    "glucose_dx_solution = glucose_model_dx.optimize()\n",
    "citrate_dy_solution = citrate_model_dy.optimize()\n",
    "\n",
    "citrate_solution = new_DM0_cit_plus_model.optimize()\n",
    "glucose_solution = new_cit_minus_model.optimize()\n",
    "\n",
    "dCdy = citrate_dy_solution.fluxes - citrate_solution.fluxes\n",
    "dGdx = glucose_dx_solution.fluxes - glucose_solution.fluxes\n",
    "\n",
    "flux_derivative = pd.DataFrame({'dCdy':dCdy,'dGdx':dGdx})\n",
    "flux_derivative['vec_norm'] = np.sqrt(np.square(flux_derivative).sum(axis=1))\n",
    "flux_derivative['product'] = flux_derivative['dCdy']*flux_derivative['dGdx']"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 22,
   "metadata": {},
   "outputs": [],
   "source": [
    "flux_derivative2 = flux_derivative[flux_derivative['vec_norm'] > epsilon]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 23,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "2.077488315028384\n"
     ]
    },
    {
     "data": {
      "text/html": [
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       "<style scoped>\n",
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       "        vertical-align: middle;\n",
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       "\n",
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       "        vertical-align: top;\n",
       "    }\n",
       "\n",
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       "        text-align: right;\n",
       "    }\n",
       "</style>\n",
       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>dCdy</th>\n",
       "      <th>dGdx</th>\n",
       "      <th>vec_norm</th>\n",
       "      <th>product</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <td>EX_glc__D_e</td>\n",
       "      <td>0.00</td>\n",
       "      <td>0.01</td>\n",
       "      <td>0.01</td>\n",
       "      <td>0.00</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <td>GLCptspp</td>\n",
       "      <td>0.00</td>\n",
       "      <td>-0.01</td>\n",
       "      <td>0.01</td>\n",
       "      <td>-0.00</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <td>GLCtex_copy2</td>\n",
       "      <td>0.00</td>\n",
       "      <td>-0.01</td>\n",
       "      <td>0.01</td>\n",
       "      <td>-0.00</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <td>FUM</td>\n",
       "      <td>-0.01</td>\n",
       "      <td>-0.00</td>\n",
       "      <td>0.01</td>\n",
       "      <td>0.00</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <td>ICDHyr</td>\n",
       "      <td>-0.01</td>\n",
       "      <td>-0.00</td>\n",
       "      <td>0.01</td>\n",
       "      <td>0.00</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <td>ME2</td>\n",
       "      <td>-4.35</td>\n",
       "      <td>0.00</td>\n",
       "      <td>4.35</td>\n",
       "      <td>-0.00</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <td>SUCDi</td>\n",
       "      <td>18.50</td>\n",
       "      <td>-0.03</td>\n",
       "      <td>18.50</td>\n",
       "      <td>-0.63</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <td>NADH16pp</td>\n",
       "      <td>-18.52</td>\n",
       "      <td>0.00</td>\n",
       "      <td>18.52</td>\n",
       "      <td>-0.00</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <td>NADH17pp</td>\n",
       "      <td>18.51</td>\n",
       "      <td>-3.88</td>\n",
       "      <td>18.91</td>\n",
       "      <td>-71.79</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <td>FRD2</td>\n",
       "      <td>18.74</td>\n",
       "      <td>-3.88</td>\n",
       "      <td>19.14</td>\n",
       "      <td>-72.71</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "<p>68 rows × 4 columns</p>\n",
       "</div>"
      ],
      "text/plain": [
       "               dCdy  dGdx  vec_norm  product\n",
       "EX_glc__D_e    0.00  0.01      0.01     0.00\n",
       "GLCptspp       0.00 -0.01      0.01    -0.00\n",
       "GLCtex_copy2   0.00 -0.01      0.01    -0.00\n",
       "FUM           -0.01 -0.00      0.01     0.00\n",
       "ICDHyr        -0.01 -0.00      0.01     0.00\n",
       "...             ...   ...       ...      ...\n",
       "ME2           -4.35  0.00      4.35    -0.00\n",
       "SUCDi         18.50 -0.03     18.50    -0.63\n",
       "NADH16pp     -18.52  0.00     18.52    -0.00\n",
       "NADH17pp      18.51 -3.88     18.91   -71.79\n",
       "FRD2          18.74 -3.88     19.14   -72.71\n",
       "\n",
       "[68 rows x 4 columns]"
      ]
     },
     "execution_count": 23,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "''' this result shows no tradeoff between glucose and citrate, neglecting the costs of gene expression.\n",
    "    what if I fix oxaloacetate decarboxylation at some value? Perhaps some tradeoff. But gene regulation could\n",
    "    alleviate the tradeoff.'''\n",
    "\n",
    "''' my initial thinking/result was that maeA flux is sensitive to changes in glucose and citrate.\n",
    "    But this finding does not seem to hold up-- this idea is cool so I keep the code, but \"result\"\n",
    "    will not be presented.'''\n",
    "\n",
    "dGdx_norm = np.sqrt(np.square(flux_derivative['dGdx']).sum())\n",
    "dCdy_norm = np.sqrt(np.square(flux_derivative['dCdy']).sum())\n",
    "theta = np.arccos(flux_derivative2['dCdy'].dot(flux_derivative2['dGdx'])/(dGdx_norm*dCdy_norm))\n",
    "print(theta)\n",
    "flux_derivative2.sort_values('vec_norm').round(2)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 24,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "                   PERCENT  FLUX                   REACTION_STRING                  \n",
      "RXN_STAT  ID                                                                        \n",
      "PRODUCING PDH       95.2    0.989  coa_c + nad_c + pyr_c --> accoa_c + co2_c + na...\n",
      "          ACS       4.85   0.0504   ac_c + atp_c + coa_c --> accoa_c + amp_c + ppi_c\n",
      "CONSUMING CS        68.8    0.715    accoa_c + h2o_c + oaa_c --> cit_c + coa_c + h_c\n",
      "          ACACT1r   5.92   0.0616                    2.0 accoa_c <=> aacoa_c + coa_c\n",
      "          IPPS      3.75    0.039  3mob_c + accoa_c + h2o_c --> 3c3hmp_c + coa_c ...\n",
      "          ACACT2r   2.96   0.0308             accoa_c + btcoa_c <=> 3ohcoa_c + coa_c\n",
      "          ACACT3r   2.96   0.0308             accoa_c + hxcoa_c <=> 3oocoa_c + coa_c\n",
      "          ACACT4r   2.96   0.0308             accoa_c + occoa_c <=> 3odcoa_c + coa_c\n",
      "          ACACT5r   2.96   0.0308           accoa_c + dcacoa_c <=> 3oddcoa_c + coa_c\n",
      "          ACGS      2.46   0.0256       accoa_c + glu__L_c --> acglu_c + coa_c + h_c\n",
      "          ACACT6r   2.31    0.024          accoa_c + ddcacoa_c <=> 3otdcoa_c + coa_c\n",
      "          ACACT7r   2.31    0.024            accoa_c + tdcoa_c <=> 3ohdcoa_c + coa_c\n",
      "          SERAT     2.06   0.0214             accoa_c + ser__L_c <=> acser_c + coa_c\n",
      "************************\n",
      "                   PERCENT  FLUX                   REACTION_STRING                  \n",
      "RXN_STAT  ID                                                                        \n",
      "PRODUCING PDH       86.8     3.15  coa_c + nad_c + pyr_c --> accoa_c + co2_c + na...\n",
      "          PTAr      13.2    0.479                  accoa_c + pi_c <=> actp_c + coa_c\n",
      "CONSUMING ACACT1r   16.1    0.586                    2.0 accoa_c <=> aacoa_c + coa_c\n",
      "          CS        12.5    0.455    accoa_c + h2o_c + oaa_c --> cit_c + coa_c + h_c\n",
      "          IPPS      10.2    0.371  3mob_c + accoa_c + h2o_c --> 3c3hmp_c + coa_c ...\n",
      "          ACACT2r   8.07    0.293             accoa_c + btcoa_c <=> 3ohcoa_c + coa_c\n",
      "          ACACT3r   8.07    0.293             accoa_c + hxcoa_c <=> 3oocoa_c + coa_c\n",
      "          ACACT4r   8.07    0.293             accoa_c + occoa_c <=> 3odcoa_c + coa_c\n",
      "          ACACT5r   8.07    0.293           accoa_c + dcacoa_c <=> 3oddcoa_c + coa_c\n",
      "          ACGS      6.71    0.243       accoa_c + glu__L_c --> acglu_c + coa_c + h_c\n",
      "          ACACT6r    6.3    0.229          accoa_c + ddcacoa_c <=> 3otdcoa_c + coa_c\n",
      "          ACACT7r    6.3    0.229            accoa_c + tdcoa_c <=> 3ohdcoa_c + coa_c\n",
      "          SERAT     5.62    0.204             accoa_c + ser__L_c <=> acser_c + coa_c\n",
      "          G1PACT    2.14   0.0778      accoa_c + gam1p_c --> acgam1p_c + coa_c + h_c\n",
      "          ACCOAC    1.76   0.0641  accoa_c + atp_c + hco3_c --> adp_c + h_c + mal...\n",
      "************************\n",
      "                   PERCENT  FLUX                   REACTION_STRING                  \n",
      "RXN_STAT  ID                                                                        \n",
      "PRODUCING PDH       80.5     2.22  coa_c + nad_c + pyr_c --> accoa_c + co2_c + na...\n",
      "          ACS       16.6    0.457   ac_c + atp_c + coa_c --> accoa_c + amp_c + ppi_c\n",
      "          PFL       2.85   0.0785                  coa_c + pyr_c --> accoa_c + for_c\n",
      "CONSUMING ACACT1r   18.6    0.511                    2.0 accoa_c <=> aacoa_c + coa_c\n",
      "          IPPS      11.8    0.324  3mob_c + accoa_c + h2o_c --> 3c3hmp_c + coa_c ...\n",
      "          ACACT2r   9.29    0.256             accoa_c + btcoa_c <=> 3ohcoa_c + coa_c\n",
      "          ACACT3r   9.29    0.256             accoa_c + hxcoa_c <=> 3oocoa_c + coa_c\n",
      "          ACACT4r   9.29    0.256             accoa_c + occoa_c <=> 3odcoa_c + coa_c\n",
      "          ACACT5r   9.29    0.256           accoa_c + dcacoa_c <=> 3oddcoa_c + coa_c\n",
      "          ACGS      7.72    0.212       accoa_c + glu__L_c --> acglu_c + coa_c + h_c\n",
      "          ACACT6r   7.26      0.2          accoa_c + ddcacoa_c <=> 3otdcoa_c + coa_c\n",
      "          ACACT7r   7.26      0.2            accoa_c + tdcoa_c <=> 3ohdcoa_c + coa_c\n",
      "          SERAT     6.47    0.178             accoa_c + ser__L_c <=> acser_c + coa_c\n",
      "          G1PACT    2.47   0.0679      accoa_c + gam1p_c --> acgam1p_c + coa_c + h_c\n",
      "          ACCOAC    2.03   0.0559  accoa_c + atp_c + hco3_c --> adp_c + h_c + mal...\n"
     ]
    }
   ],
   "source": [
    "''' look at acetyl-CoA in the old models'''\n",
    "print(old_cit_minus_model.metabolites.accoa_c.summary())\n",
    "print('************************')\n",
    "print(old_DM25_cit_plus_model.metabolites.accoa_c.summary())\n",
    "print('************************')\n",
    "print(old_DM0_cit_plus_model.metabolites.accoa_c.summary())"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 25,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "                   PERCENT  FLUX                   REACTION_STRING                  \n",
      "RXN_STAT  ID                                                                        \n",
      "PRODUCING PDH       95.2    0.989  coa_c + nad_c + pyr_c --> accoa_c + co2_c + na...\n",
      "          PTAr      4.85   0.0504                  accoa_c + pi_c <=> actp_c + coa_c\n",
      "CONSUMING CS        68.8    0.715    accoa_c + h2o_c + oaa_c --> cit_c + coa_c + h_c\n",
      "          ACACT1r   5.92   0.0616                    2.0 accoa_c <=> aacoa_c + coa_c\n",
      "          IPPS      3.75    0.039  3mob_c + accoa_c + h2o_c --> 3c3hmp_c + coa_c ...\n",
      "          ACACT2r   2.96   0.0308             accoa_c + btcoa_c <=> 3ohcoa_c + coa_c\n",
      "          ACACT3r   2.96   0.0308             accoa_c + hxcoa_c <=> 3oocoa_c + coa_c\n",
      "          ACACT4r   2.96   0.0308             accoa_c + occoa_c <=> 3odcoa_c + coa_c\n",
      "          ACACT5r   2.96   0.0308           accoa_c + dcacoa_c <=> 3oddcoa_c + coa_c\n",
      "          ACGS      2.46   0.0256       accoa_c + glu__L_c --> acglu_c + coa_c + h_c\n",
      "          ACACT6r   2.31    0.024          accoa_c + ddcacoa_c <=> 3otdcoa_c + coa_c\n",
      "          ACACT7r   2.31    0.024            accoa_c + tdcoa_c <=> 3ohdcoa_c + coa_c\n",
      "          SERAT     2.06   0.0214             accoa_c + ser__L_c <=> acser_c + coa_c\n",
      "************************\n",
      "                   PERCENT  FLUX                   REACTION_STRING                  \n",
      "RXN_STAT  ID                                                                        \n",
      "PRODUCING PDH       86.8     3.15  coa_c + nad_c + pyr_c --> accoa_c + co2_c + na...\n",
      "          PTAr      13.2    0.479                  accoa_c + pi_c <=> actp_c + coa_c\n",
      "CONSUMING ACACT1r   16.1    0.586                    2.0 accoa_c <=> aacoa_c + coa_c\n",
      "          CS        12.5    0.455    accoa_c + h2o_c + oaa_c --> cit_c + coa_c + h_c\n",
      "          IPPS      10.2    0.371  3mob_c + accoa_c + h2o_c --> 3c3hmp_c + coa_c ...\n",
      "          ACACT2r   8.07    0.293             accoa_c + btcoa_c <=> 3ohcoa_c + coa_c\n",
      "          ACACT3r   8.07    0.293             accoa_c + hxcoa_c <=> 3oocoa_c + coa_c\n",
      "          ACACT4r   8.07    0.293             accoa_c + occoa_c <=> 3odcoa_c + coa_c\n",
      "          ACACT5r   8.07    0.293           accoa_c + dcacoa_c <=> 3oddcoa_c + coa_c\n",
      "          ACGS      6.71    0.243       accoa_c + glu__L_c --> acglu_c + coa_c + h_c\n",
      "          ACACT6r    6.3    0.229          accoa_c + ddcacoa_c <=> 3otdcoa_c + coa_c\n",
      "          ACACT7r    6.3    0.229            accoa_c + tdcoa_c <=> 3ohdcoa_c + coa_c\n",
      "          SERAT     5.62    0.204             accoa_c + ser__L_c <=> acser_c + coa_c\n",
      "          G1PACT    2.14   0.0778      accoa_c + gam1p_c --> acgam1p_c + coa_c + h_c\n",
      "          ACCOAC    1.76   0.0641  accoa_c + atp_c + hco3_c --> adp_c + h_c + mal...\n",
      "************************\n",
      "                   PERCENT  FLUX                   REACTION_STRING                  \n",
      "RXN_STAT  ID                                                                        \n",
      "PRODUCING PDH       80.7     2.24  coa_c + nad_c + pyr_c --> accoa_c + co2_c + na...\n",
      "          ACS       16.5    0.457   ac_c + atp_c + coa_c --> accoa_c + amp_c + ppi_c\n",
      "          PFL       2.83   0.0785                  coa_c + pyr_c --> accoa_c + for_c\n",
      "CONSUMING ACACT1r   18.4    0.511                    2.0 accoa_c <=> aacoa_c + coa_c\n",
      "          IPPS      11.7    0.324  3mob_c + accoa_c + h2o_c --> 3c3hmp_c + coa_c ...\n",
      "          ACACT2r   9.22    0.256             accoa_c + btcoa_c <=> 3ohcoa_c + coa_c\n",
      "          ACACT3r   9.22    0.256             accoa_c + hxcoa_c <=> 3oocoa_c + coa_c\n",
      "          ACACT4r   9.22    0.256             accoa_c + occoa_c <=> 3odcoa_c + coa_c\n",
      "          ACACT5r   9.22    0.256           accoa_c + dcacoa_c <=> 3oddcoa_c + coa_c\n",
      "          ACGS      7.67    0.212       accoa_c + glu__L_c --> acglu_c + coa_c + h_c\n",
      "          ACACT6r   7.21      0.2          accoa_c + ddcacoa_c <=> 3otdcoa_c + coa_c\n",
      "          ACACT7r   7.21      0.2            accoa_c + tdcoa_c <=> 3ohdcoa_c + coa_c\n",
      "          SERAT     6.43    0.178             accoa_c + ser__L_c <=> acser_c + coa_c\n",
      "          G1PACT    2.45   0.0679      accoa_c + gam1p_c --> acgam1p_c + coa_c + h_c\n",
      "          ACCOAC    2.02   0.0559  accoa_c + atp_c + hco3_c --> adp_c + h_c + mal...\n"
     ]
    }
   ],
   "source": [
    "''' look at acetyl-CoA in the models'''\n",
    "print(new_cit_minus_model.metabolites.accoa_c.summary())\n",
    "print('************************')\n",
    "print(new_DM25_cit_plus_model.metabolites.accoa_c.summary())\n",
    "print('************************')\n",
    "print(new_DM0_cit_plus_model.metabolites.accoa_c.summary())"
   ]
  }
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