ScienceBeam Usage Examples

⚠️ Under new stewardship

eLife have handed over stewardship of ScienceBeam to The Coko Foundation. You can now find the updated code repository at https://gitlab.coko.foundation/sciencebeam/sciencebeam-usage-examples and continue the conversation on Coko's Mattermost chat server: https://mattermost.coko.foundation/

For more information on why we're doing this read our latest update on our new technology direction: https://elifesciences.org/inside-elife/daf1b699/elife-latest-announcing-a-new-technology-direction

Overview

This repo provides usage examples for ScienceBeam. In particular ScienceBeam Parser. The examples are provided as Jupyter notebooks.

Notebooks

• ScienceBeam Parser: Start Service using Python API and use Rest API (open in colab)
• ScienceBeam Parser: Use Python API to parse PDF to TEI XML (open in colab)
• ScienceBeam Parser: Advanced example exploring and training name model (open in colab)

Launch notebooks in binder

Running the notebooks locally

This requires Docker and Docker Compose.

make jupyter-build jupyter-start jupyter-logs

The service will be available under the port 8890, unless another port has been configured using SCIENCEBEAM_USAGE_EXAMPLES_JUPYTER_PORT (see .env).

make jupyter-stop