feat: add Snakemake/SMK to descriptor types

elixir-cloud-aai · Nov 9, 2021 · 24156d6 · 24156d6
1 parent 3e2a291
commit 24156d6
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Showing 3 changed files with 12 additions and 11 deletions.
diff --git a/trs_cli/__init__.py b/trs_cli/__init__.py
@@ -1 +1 @@
-__version__ = '0.4.0'
+__version__ = '0.5.0'
diff --git a/trs_cli/client.py b/trs_cli/client.py
@@ -1140,8 +1140,8 @@ def get_descriptor(
             type: The output type of the descriptor. Plain types return
                 the bare descriptor while the "non-plain" types return a
                 descriptor wrapped with metadata. Allowed values include "CWL",
-                "WDL", "NFL", "GALAXY", "PLAIN_CWL", "PLAIN_WDL", "PLAIN_NFL",
-                "PLAIN_GALAXY".
+                "WDL", "NFL", "GALAXY", "SMK", "PLAIN_CWL", "PLAIN_WDL",
+                "PLAIN_NFL", "PLAIN_GALAXY", "PLAIN_SMK".
             id: A unique identifier of the tool, scoped to this registry OR
                 a TRS URI. If a TRS URI is passed and includes the version
                 identifier, passing a `version_id` is optional. For more
@@ -1217,8 +1217,8 @@ def get_descriptor_by_path(
             type: The output type of the descriptor. Plain types return
                 the bare descriptor while the "non-plain" types return a
                 descriptor wrapped with metadata. Allowed values include "CWL",
-                "WDL", "NFL", "GALAXY", "PLAIN_CWL", "PLAIN_WDL", "PLAIN_NFL",
-                "PLAIN_GALAXY".
+                "WDL", "NFL", "GALAXY", "SMK", "PLAIN_CWL", "PLAIN_WDL",
+                "PLAIN_NFL", "PLAIN_GALAXY", "PLAIN_SMK".
             path: Path, including filename, of descriptor or associated file
                 relative to the primary descriptor file.
             id: A unique identifier of the tool, scoped to this registry OR
@@ -1296,8 +1296,8 @@ def get_files(
             type: The output type of the descriptor. Plain types return
                 the bare descriptor while the "non-plain" types return a
                 descriptor wrapped with metadata. Allowed values include "CWL",
-                "WDL", "NFL", "GALAXY", "PLAIN_CWL", "PLAIN_WDL", "PLAIN_NFL",
-                "PLAIN_GALAXY".
+                "WDL", "NFL", "GALAXY", "SMK", "PLAIN_CWL", "PLAIN_WDL",
+                "PLAIN_NFL", "PLAIN_GALAXY", "PLAIN_SMK".
             id: A unique identifier of the tool, scoped to this registry OR
                 a hostname-based TRS URI. If TRS URIs include the version
                 information, passing a `version_id` is optional.
@@ -1377,8 +1377,8 @@ def get_tests(
             type: The output type of the descriptor. Plain types return
                 the bare descriptor while the "non-plain" types return a
                 descriptor wrapped with metadata. Allowed values include "CWL",
-                "WDL", "NFL", "GALAXY", "PLAIN_CWL", "PLAIN_WDL", "PLAIN_NFL",
-                "PLAIN_GALAXY".
+                "WDL", "NFL", "GALAXY", "SMK", "PLAIN_CWL", "PLAIN_WDL",
+                "PLAIN_NFL", "PLAIN_GALAXY", "PLAIN_SMK".
             id: A unique identifier of the tool, scoped to this registry OR
                 a TRS URI. If a TRS URI is passed and includes the version
                 identifier, passing a `version_id` is optional. For more
@@ -1455,8 +1455,8 @@ def retrieve_files(
             type: The output type of the descriptor. Plain types return
                 the bare descriptor while the "non-plain" types return a
                 descriptor wrapped with metadata. Allowed values include
-                "CWL", "WDL", "NFL", "GALAXY", "PLAIN_CWL", "PLAIN_WDL",
-                "PLAIN_NFL", "PLAIN_GALAXY".
+                "CWL", "WDL", "NFL", "GALAXY", "SMK", "PLAIN_CWL", "PLAIN_WDL",
+                "PLAIN_NFL", "PLAIN_GALAXY", "PLAIN_SMK".
             id: A unique identifier of the tool, scoped to this registry OR
                 a hostname-based TRS URI. If TRS URIs include the version
                 information, passing a `version_id` is optional.

diff --git a/trs_cli/models.py b/trs_cli/models.py
@@ -43,6 +43,7 @@ class DescriptorType(str, Enum):
     WDL = 'WDL'
     NFL = 'NFL'
     GALAXY = 'GALAXY'
+    SMK = 'SMK'
 
 
 class Error(CustomBaseModel):