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elsayed-lab

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  1. hpgltools hpgltools Public

    A collection of R functions to aid in host-pathogen genomic research

    R 11 10

  2. utr_analysis utr_analysis Public

    Pipeline for determining the 5'UTR spliced leader and 3'UTR poly-A acceptor sites in a collection of RNA-Seq reads

    Python 7 3

  3. manuscript-shared-rnaseq manuscript-shared-rnaseq Public

    R and Rmarkdown code used across multiple RNA-Seq projects.

    R 2 6

  4. dantools dantools Public

    Utilities to compare disparate genomes

    Perl 2 2

  5. CYOA CYOA Public

    Perl 1 2

  6. lmajor_alternate_acceptor_site_usage lmajor_alternate_acceptor_site_usage Public

    Analysis comparing the use of alternative trans-splicing and alternative-polyadenylation sites across developmental stages in Leishmania major

Repositories

Showing 10 of 28 repositories
  • dantools Public

    Utilities to compare disparate genomes

    elsayed-lab/dantools’s past year of commit activity
    Perl 2 2 0 0 Updated Oct 23, 2024
  • elsayed-lab/fe_adipocyte_analyses’s past year of commit activity
    TeX 0 GPL-3.0 0 0 0 Updated Oct 9, 2024
  • macrophage_response_lpanamensis Public

    singularity container comprising analyses of macrophages infected with Leishmania panamensis.

    elsayed-lab/macrophage_response_lpanamensis’s past year of commit activity
    Shell 0 1 0 0 Updated Oct 1, 2024
  • cure_fail_host_analyses Public

    Container recipe for repeating the L.panamensis cure/fail analyses in the host.

    elsayed-lab/cure_fail_host_analyses’s past year of commit activity
    TeX 0 GPL-3.0 1 0 0 Updated Sep 24, 2024
  • elsayed-lab/clinical_strains_analyses’s past year of commit activity
    TeX 0 0 0 0 Updated Sep 23, 2024
  • elsayed-lab/hpgltools_singularity’s past year of commit activity
    Emacs Lisp 0 GPL-3.0 1 0 1 Updated May 14, 2024
  • hpgltools Public

    A collection of R functions to aid in host-pathogen genomic research

    elsayed-lab/hpgltools’s past year of commit activity
    R 11 10 0 1 Updated May 8, 2024
  • clinical_strains_lpanamensis Public

    singularity container comprising the comparison of some clinical strains

    elsayed-lab/clinical_strains_lpanamensis’s past year of commit activity
    Shell 0 1 0 0 Updated Apr 24, 2024
  • CL_biopsies_Colombia Public

    container recipe to perform analyses examining cutaneous leishmania biopsies with CIDEIM published approximately 202310

    elsayed-lab/CL_biopsies_Colombia’s past year of commit activity
    Emacs Lisp 0 GPL-2.0 2 0 0 Updated Apr 24, 2024
  • CYOA Public
    elsayed-lab/CYOA’s past year of commit activity
    Perl 1 2 0 0 Updated Dec 11, 2023

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