v0.10.2.dev1: remove print warning for OLS

sfftk/__init__.py

@@ -3,4 +3,4 @@
 
 BASE_DIR = os.path.dirname(__file__)
 
-SFFTK_VERSION = 'v0.10.2.dev0'
+SFFTK_VERSION = 'v0.10.2.dev1'

sfftk/sff.py

@@ -213,8 +213,8 @@ def handle_notes_search(args, configs):
     from sfftk.notes import find
     from styled import Styled
     # query
-    warning_string = Styled("[[ 'Warning: the --start option is not working due to a fault in the OLS API; a new version will be released as soon as it is fixed'|fg-dark_orange ]]")
-    print_date(str(warning_string))
+    # warning_string = Styled("[[ 'Warning: the --start option is not working due to a fault in the OLS API; a new version will be released as soon as it is fixed'|fg-dark_orange ]]")
+    # print_date(str(warning_string))
     resource = find.SearchResource(args, configs)
     # fixme: use print_date
     if not args.as_text:

sfftk/test_data/sff/v0.8/output_emd_1181.json

@@ -45,15 +45,15 @@
       "id": 15559,
       "parent_id": 0,
       "biological_annotation": {
-        "name": "origin curtains acquisition",
-        "description": "Potenti, dictumstvivamus sea sapien dolore nullamauris libero. Faucibusvestibulum aptent, sed nobis aliquet venenatis primis.",
-        "number_of_instances": 312,
+        "name": "gleam center ray",
+        "description": "Eirmod rhoncusmaecenas himenaeos ipsumcurabitur, clita magnainteger proin. Aptent nibh antesuspendisse rebum, himenaeos quam nec lacinia nihil lacus turpis iaculis dui.",
+        "number_of_instances": 98,
         "external_references": [
           {
             "id": 0,
-            "resource": "neck",
-            "url": "implantation",
-            "accession": "articles",
+            "resource": "web",
+            "url": "passbook",
+            "accession": "moves",
             "label": null,
             "description": null
           }

sfftk/test_data/sff/v0.8/output_emd_1181.sff

@@ -28,12 +28,12 @@
     <segment_list>
         <segment id="15559" parent_id="0">
             <biological_annotation>
-                <name>stresses width airs</name>
-                <description>Pellentesque consequat semper nec massaphasellus nullam. Illum vitae ipsumcurabitur euismod elitduis.</description>
+                <name>construction tubing debt</name>
+                <description>Ametduis vestibulumnulla taciti sea, euismod quisque nec consetetur. Doming magnainteger dui iaculis justo, no muspellentesque tempus.</description>
                 <external_references>
-                    <ref id="0" resource="qualification" url="linkages" accession="expansion"/>
+                    <ref id="0" resource="provisions" url="analyzers" accession="habits"/>
                 </external_references>
-                <number_of_instances>789</number_of_instances>
+                <number_of_instances>384</number_of_instances>
             </biological_annotation>
             <colour>
                 <red>0.921817600727081</red>

sfftk/unittests/test_notes.py

@@ -2348,7 +2348,7 @@ def test_search_no_results(self):
         results = resource.search()
         print(results.structured_response)
         if results is not None:
-            self.assertEqual(371, len(results))
+            self.assertTrue(len(results) > 0)
         else:
             self.stderr(
                 "Warning: unable to run test on response due to API issue to {url}".format(url=resource.get_url()))
@@ -2390,8 +2390,7 @@ def test_search_from_start(self):
         resource = find.SearchResource(args, configs)
         results = resource.search()
         if results is not None:
-            # self.assertGreaterEqual(results.structured_response['response']['start'], random_start - 1)
-            pass
+            self.assertGreaterEqual(results.structured_response['response']['start'], random_start - 1)
         else:
             self.stderr(
                 "Warning: unable to run test on response due to API issue to {url}".format(url=resource.get_url()))