-
Notifications
You must be signed in to change notification settings - Fork 1
/
404.html
753 lines (709 loc) · 77.3 KB
/
404.html
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
<!DOCTYPE html>
<html lang="" xml:lang="">
<head>
<meta charset="utf-8" />
<meta http-equiv="X-UA-Compatible" content="IE=edge" />
<title>Page not found | The medfate reference book</title>
<meta name="description" content="This is a reference book for models implemented in packages medfate and medfateland." />
<meta name="generator" content="bookdown 0.33 and GitBook 2.6.7" />
<meta property="og:title" content="Page not found | The medfate reference book" />
<meta property="og:type" content="book" />
<meta property="og:description" content="This is a reference book for models implemented in packages medfate and medfateland." />
<meta name="twitter:card" content="summary" />
<meta name="twitter:title" content="Page not found | The medfate reference book" />
<meta name="twitter:description" content="This is a reference book for models implemented in packages medfate and medfateland." />
<meta name="date" content="2023-04-25" />
<meta name="viewport" content="width=device-width, initial-scale=1" />
<meta name="apple-mobile-web-app-capable" content="yes" />
<meta name="apple-mobile-web-app-status-bar-style" content="black" />
<script src="libs/jquery-3.6.0/jquery-3.6.0.min.js"></script>
<script src="https://cdn.jsdelivr.net/npm/fuse.js@6.4.6/dist/fuse.min.js"></script>
<link href="libs/gitbook-2.6.7/css/style.css" rel="stylesheet" />
<link href="libs/gitbook-2.6.7/css/plugin-table.css" rel="stylesheet" />
<link href="libs/gitbook-2.6.7/css/plugin-bookdown.css" rel="stylesheet" />
<link href="libs/gitbook-2.6.7/css/plugin-highlight.css" rel="stylesheet" />
<link href="libs/gitbook-2.6.7/css/plugin-search.css" rel="stylesheet" />
<link href="libs/gitbook-2.6.7/css/plugin-fontsettings.css" rel="stylesheet" />
<link href="libs/gitbook-2.6.7/css/plugin-clipboard.css" rel="stylesheet" />
<link href="libs/anchor-sections-1.1.0/anchor-sections.css" rel="stylesheet" />
<link href="libs/anchor-sections-1.1.0/anchor-sections-hash.css" rel="stylesheet" />
<script src="libs/anchor-sections-1.1.0/anchor-sections.js"></script>
<style type="text/css">
pre > code.sourceCode { white-space: pre; position: relative; }
pre > code.sourceCode > span { display: inline-block; line-height: 1.25; }
pre > code.sourceCode > span:empty { height: 1.2em; }
.sourceCode { overflow: visible; }
code.sourceCode > span { color: inherit; text-decoration: inherit; }
pre.sourceCode { margin: 0; }
@media screen {
div.sourceCode { overflow: auto; }
}
@media print {
pre > code.sourceCode { white-space: pre-wrap; }
pre > code.sourceCode > span { text-indent: -5em; padding-left: 5em; }
}
pre.numberSource code
{ counter-reset: source-line 0; }
pre.numberSource code > span
{ position: relative; left: -4em; counter-increment: source-line; }
pre.numberSource code > span > a:first-child::before
{ content: counter(source-line);
position: relative; left: -1em; text-align: right; vertical-align: baseline;
border: none; display: inline-block;
-webkit-touch-callout: none; -webkit-user-select: none;
-khtml-user-select: none; -moz-user-select: none;
-ms-user-select: none; user-select: none;
padding: 0 4px; width: 4em;
color: #aaaaaa;
}
pre.numberSource { margin-left: 3em; border-left: 1px solid #aaaaaa; padding-left: 4px; }
div.sourceCode
{ }
@media screen {
pre > code.sourceCode > span > a:first-child::before { text-decoration: underline; }
}
code span.al { color: #ff0000; font-weight: bold; } /* Alert */
code span.an { color: #60a0b0; font-weight: bold; font-style: italic; } /* Annotation */
code span.at { color: #7d9029; } /* Attribute */
code span.bn { color: #40a070; } /* BaseN */
code span.bu { color: #008000; } /* BuiltIn */
code span.cf { color: #007020; font-weight: bold; } /* ControlFlow */
code span.ch { color: #4070a0; } /* Char */
code span.cn { color: #880000; } /* Constant */
code span.co { color: #60a0b0; font-style: italic; } /* Comment */
code span.cv { color: #60a0b0; font-weight: bold; font-style: italic; } /* CommentVar */
code span.do { color: #ba2121; font-style: italic; } /* Documentation */
code span.dt { color: #902000; } /* DataType */
code span.dv { color: #40a070; } /* DecVal */
code span.er { color: #ff0000; font-weight: bold; } /* Error */
code span.ex { } /* Extension */
code span.fl { color: #40a070; } /* Float */
code span.fu { color: #06287e; } /* Function */
code span.im { color: #008000; font-weight: bold; } /* Import */
code span.in { color: #60a0b0; font-weight: bold; font-style: italic; } /* Information */
code span.kw { color: #007020; font-weight: bold; } /* Keyword */
code span.op { color: #666666; } /* Operator */
code span.ot { color: #007020; } /* Other */
code span.pp { color: #bc7a00; } /* Preprocessor */
code span.sc { color: #4070a0; } /* SpecialChar */
code span.ss { color: #bb6688; } /* SpecialString */
code span.st { color: #4070a0; } /* String */
code span.va { color: #19177c; } /* Variable */
code span.vs { color: #4070a0; } /* VerbatimString */
code span.wa { color: #60a0b0; font-weight: bold; font-style: italic; } /* Warning */
</style>
<style type="text/css">
/* Used with Pandoc 2.11+ new --citeproc when CSL is used */
div.csl-bib-body { }
div.csl-entry {
clear: both;
}
.hanging div.csl-entry {
margin-left:2em;
text-indent:-2em;
}
div.csl-left-margin {
min-width:2em;
float:left;
}
div.csl-right-inline {
margin-left:2em;
padding-left:1em;
}
div.csl-indent {
margin-left: 2em;
}
</style>
<link rel="stylesheet" href="style.css" type="text/css" />
</head>
<body>
<div class="book without-animation with-summary font-size-2 font-family-1" data-basepath=".">
<div class="book-summary">
<nav role="navigation">
<ul class="summary">
<li><a href="./index.html">The medfate book</a></li>
<li class="divider"></li>
<li class="chapter" data-level="" data-path="index.html"><a href="index.html"><i class="fa fa-check"></i>Preface</a>
<ul>
<li class="chapter" data-level="" data-path="index.html"><a href="index.html#how-to-use-this-book"><i class="fa fa-check"></i>How to use this book</a></li>
<li class="chapter" data-level="" data-path="index.html"><a href="index.html#an-ongoing-project"><i class="fa fa-check"></i>An ongoing project</a></li>
<li class="chapter" data-level="" data-path="index.html"><a href="index.html#acknowledgements"><i class="fa fa-check"></i>Acknowledgements</a></li>
</ul></li>
<li class="part"><span><b>I Preliminaries</b></span></li>
<li class="chapter" data-level="1" data-path="intro.html"><a href="intro.html"><i class="fa fa-check"></i><b>1</b> Introduction</a>
<ul>
<li class="chapter" data-level="1.1" data-path="intro.html"><a href="intro.html#purpose"><i class="fa fa-check"></i><b>1.1</b> Purpose</a>
<ul>
<li class="chapter" data-level="1.1.1" data-path="intro.html"><a href="intro.html#package-medfate"><i class="fa fa-check"></i><b>1.1.1</b> Package medfate</a></li>
<li class="chapter" data-level="1.1.2" data-path="intro.html"><a href="intro.html#package-medfateland"><i class="fa fa-check"></i><b>1.1.2</b> Package medfateland</a></li>
<li class="chapter" data-level="1.1.3" data-path="intro.html"><a href="intro.html#companion-packages"><i class="fa fa-check"></i><b>1.1.3</b> Companion packages</a></li>
</ul></li>
<li class="chapter" data-level="1.2" data-path="intro.html"><a href="intro.html#installation"><i class="fa fa-check"></i><b>1.2</b> Installation</a>
<ul>
<li class="chapter" data-level="1.2.1" data-path="intro.html"><a href="intro.html#requirements"><i class="fa fa-check"></i><b>1.2.1</b> Requirements</a></li>
<li class="chapter" data-level="1.2.2" data-path="intro.html"><a href="intro.html#installing-medfate"><i class="fa fa-check"></i><b>1.2.2</b> Installing medfate</a></li>
<li class="chapter" data-level="1.2.3" data-path="intro.html"><a href="intro.html#installing-medfateland"><i class="fa fa-check"></i><b>1.2.3</b> Installing medfateland</a></li>
</ul></li>
<li class="chapter" data-level="1.3" data-path="intro.html"><a href="intro.html#main-functions-in-medfate"><i class="fa fa-check"></i><b>1.3</b> Main functions in medfate</a>
<ul>
<li class="chapter" data-level="1.3.1" data-path="intro.html"><a href="intro.html#dynamic-simulation-functions"><i class="fa fa-check"></i><b>1.3.1</b> Dynamic simulation functions</a></li>
<li class="chapter" data-level="1.3.2" data-path="intro.html"><a href="intro.html#sub-model-functions"><i class="fa fa-check"></i><b>1.3.2</b> Sub-model functions</a></li>
<li class="chapter" data-level="1.3.3" data-path="intro.html"><a href="intro.html#static-functions"><i class="fa fa-check"></i><b>1.3.3</b> Static functions</a></li>
</ul></li>
<li class="chapter" data-level="1.4" data-path="intro.html"><a href="intro.html#main-functions-in-medfateland"><i class="fa fa-check"></i><b>1.4</b> Main functions in medfateland</a></li>
</ul></li>
<li class="chapter" data-level="2" data-path="model-inputs.html"><a href="model-inputs.html"><i class="fa fa-check"></i><b>2</b> Model inputs</a>
<ul>
<li class="chapter" data-level="2.1" data-path="model-inputs.html"><a href="model-inputs.html#input-structures"><i class="fa fa-check"></i><b>2.1</b> Input structures</a>
<ul>
<li class="chapter" data-level="2.1.1" data-path="model-inputs.html"><a href="model-inputs.html#inputstructuresmedfate"><i class="fa fa-check"></i><b>2.1.1</b> Input structures in medfate</a></li>
<li class="chapter" data-level="2.1.2" data-path="model-inputs.html"><a href="model-inputs.html#medfatelandstructures"><i class="fa fa-check"></i><b>2.1.2</b> Input structures in medfateland</a></li>
</ul></li>
<li class="chapter" data-level="2.2" data-path="model-inputs.html"><a href="model-inputs.html#topoinput"><i class="fa fa-check"></i><b>2.2</b> Latitude and topography</a></li>
<li class="chapter" data-level="2.3" data-path="model-inputs.html"><a href="model-inputs.html#soilinput"><i class="fa fa-check"></i><b>2.3</b> Soil description</a>
<ul>
<li class="chapter" data-level="2.3.1" data-path="model-inputs.html"><a href="model-inputs.html#soil-physical-properties"><i class="fa fa-check"></i><b>2.3.1</b> Soil physical properties</a></li>
<li class="chapter" data-level="2.3.2" data-path="model-inputs.html"><a href="model-inputs.html#waterretentioncurves"><i class="fa fa-check"></i><b>2.3.2</b> Water retention curves</a></li>
<li class="chapter" data-level="2.3.3" data-path="model-inputs.html"><a href="model-inputs.html#soilinitialization"><i class="fa fa-check"></i><b>2.3.3</b> Soil initialization</a></li>
<li class="chapter" data-level="2.3.4" data-path="model-inputs.html"><a href="model-inputs.html#water-content-and-water-table-depth"><i class="fa fa-check"></i><b>2.3.4</b> Water content and water table depth</a></li>
</ul></li>
<li class="chapter" data-level="2.4" data-path="model-inputs.html"><a href="model-inputs.html#vegetationinput"><i class="fa fa-check"></i><b>2.4</b> Vegetation description</a>
<ul>
<li class="chapter" data-level="2.4.1" data-path="model-inputs.html"><a href="model-inputs.html#structural-attributes-of-woody-plant-cohorts"><i class="fa fa-check"></i><b>2.4.1</b> Structural attributes of woody plant cohorts</a></li>
<li class="chapter" data-level="2.4.2" data-path="model-inputs.html"><a href="model-inputs.html#structural-attributes-of-herbaceous-vegetation"><i class="fa fa-check"></i><b>2.4.2</b> Structural attributes of herbaceous vegetation</a></li>
<li class="chapter" data-level="2.4.3" data-path="model-inputs.html"><a href="model-inputs.html#leaf-area-index-of-the-forest-stand"><i class="fa fa-check"></i><b>2.4.3</b> Leaf area index of the forest stand</a></li>
<li class="chapter" data-level="2.4.4" data-path="model-inputs.html"><a href="model-inputs.html#forestobjects"><i class="fa fa-check"></i><b>2.4.4</b> Forest plot objects</a></li>
<li class="chapter" data-level="2.4.5" data-path="model-inputs.html"><a href="model-inputs.html#leafdistribution"><i class="fa fa-check"></i><b>2.4.5</b> Vertical leaf distribution</a></li>
<li class="chapter" data-level="2.4.6" data-path="model-inputs.html"><a href="model-inputs.html#rootdistribution"><i class="fa fa-check"></i><b>2.4.6</b> Vertical root distribution</a></li>
<li class="chapter" data-level="2.4.7" data-path="model-inputs.html"><a href="model-inputs.html#plantwaterpools"><i class="fa fa-check"></i><b>2.4.7</b> Water pools and root horizontal distribution</a></li>
<li class="chapter" data-level="2.4.8" data-path="model-inputs.html"><a href="model-inputs.html#functionaltraits"><i class="fa fa-check"></i><b>2.4.8</b> Functional traits and vegetation initialization</a></li>
<li class="chapter" data-level="2.4.9" data-path="model-inputs.html"><a href="model-inputs.html#update-of-structural-variables-during-simulations"><i class="fa fa-check"></i><b>2.4.9</b> Update of structural variables during simulations</a></li>
</ul></li>
<li class="chapter" data-level="2.5" data-path="model-inputs.html"><a href="model-inputs.html#meteoinput"><i class="fa fa-check"></i><b>2.5</b> Metereological input</a></li>
<li class="chapter" data-level="2.6" data-path="model-inputs.html"><a href="model-inputs.html#controlparameters"><i class="fa fa-check"></i><b>2.6</b> Simulation control</a></li>
</ul></li>
<li class="part"><span><b>II Basic water balance modelling</b></span></li>
<li class="chapter" data-level="3" data-path="basicwaterbalance.html"><a href="basicwaterbalance.html"><i class="fa fa-check"></i><b>3</b> Basic water balance model</a>
<ul>
<li class="chapter" data-level="3.1" data-path="basicwaterbalance.html"><a href="basicwaterbalance.html#basicdesign"><i class="fa fa-check"></i><b>3.1</b> Design principles</a></li>
<li class="chapter" data-level="3.2" data-path="basicwaterbalance.html"><a href="basicwaterbalance.html#statevariablesbasic"><i class="fa fa-check"></i><b>3.2</b> State variables</a></li>
<li class="chapter" data-level="3.3" data-path="basicwaterbalance.html"><a href="basicwaterbalance.html#soilwaterbalance"><i class="fa fa-check"></i><b>3.3</b> Water balance</a></li>
<li class="chapter" data-level="3.4" data-path="basicwaterbalance.html"><a href="basicwaterbalance.html#basicwaterbalancescheduling"><i class="fa fa-check"></i><b>3.4</b> Process scheduling</a></li>
<li class="chapter" data-level="3.5" data-path="basicwaterbalance.html"><a href="basicwaterbalance.html#basicwaterbalanceinputsoutputs"><i class="fa fa-check"></i><b>3.5</b> Inputs and outputs</a>
<ul>
<li class="chapter" data-level="3.5.1" data-path="basicwaterbalance.html"><a href="basicwaterbalance.html#soil-vegetation-and-meteorology"><i class="fa fa-check"></i><b>3.5.1</b> Soil, vegetation and meteorology</a></li>
<li class="chapter" data-level="3.5.2" data-path="basicwaterbalance.html"><a href="basicwaterbalance.html#basicwatervegetationparameters"><i class="fa fa-check"></i><b>3.5.2</b> Vegetation functional parameters</a></li>
<li class="chapter" data-level="3.5.3" data-path="basicwaterbalance.html"><a href="basicwaterbalance.html#basicwaterbalancecontrol"><i class="fa fa-check"></i><b>3.5.3</b> Control parameters</a></li>
<li class="chapter" data-level="3.5.4" data-path="basicwaterbalance.html"><a href="basicwaterbalance.html#basicwaterbalanceoutput"><i class="fa fa-check"></i><b>3.5.4</b> Model output</a></li>
</ul></li>
<li class="chapter" data-level="3.6" data-path="basicwaterbalance.html"><a href="basicwaterbalance.html#basicwaterbalanceapplications"><i class="fa fa-check"></i><b>3.6</b> Applications</a></li>
</ul></li>
<li class="chapter" data-level="4" data-path="leafphenologylight.html"><a href="leafphenologylight.html"><i class="fa fa-check"></i><b>4</b> Leaf phenology and light extinction</a>
<ul>
<li class="chapter" data-level="4.1" data-path="leafphenologylight.html"><a href="leafphenologylight.html#leafphenology"><i class="fa fa-check"></i><b>4.1</b> Leaf phenology</a>
<ul>
<li class="chapter" data-level="4.1.1" data-path="leafphenologylight.html"><a href="leafphenologylight.html#phenological-types-and-leaf-expanded-area"><i class="fa fa-check"></i><b>4.1.1</b> Phenological types and leaf expanded area</a></li>
<li class="chapter" data-level="4.1.2" data-path="leafphenologylight.html"><a href="leafphenologylight.html#leafphenobudburst"><i class="fa fa-check"></i><b>4.1.2</b> Bud burst and leaf unfolding</a></li>
<li class="chapter" data-level="4.1.3" data-path="leafphenologylight.html"><a href="leafphenologylight.html#leafphenosenescence"><i class="fa fa-check"></i><b>4.1.3</b> Leaf senescence</a></li>
<li class="chapter" data-level="4.1.4" data-path="leafphenologylight.html"><a href="leafphenologylight.html#leaf-abscission"><i class="fa fa-check"></i><b>4.1.4</b> Leaf abscission</a></li>
</ul></li>
<li class="chapter" data-level="4.2" data-path="leafphenologylight.html"><a href="leafphenologylight.html#basiclightextinction"><i class="fa fa-check"></i><b>4.2</b> Light extinction</a></li>
</ul></li>
<li class="chapter" data-level="5" data-path="hydrology.html"><a href="hydrology.html"><i class="fa fa-check"></i><b>5</b> Forest hydrology</a>
<ul>
<li class="chapter" data-level="5.1" data-path="hydrology.html"><a href="hydrology.html#precipitation"><i class="fa fa-check"></i><b>5.1</b> Snow and rainfall</a></li>
<li class="chapter" data-level="5.2" data-path="hydrology.html"><a href="hydrology.html#snowpack"><i class="fa fa-check"></i><b>5.2</b> Snow pack dynamics</a></li>
<li class="chapter" data-level="5.3" data-path="hydrology.html"><a href="hydrology.html#interception"><i class="fa fa-check"></i><b>5.3</b> Rainfall interception loss</a></li>
<li class="chapter" data-level="5.4" data-path="hydrology.html"><a href="hydrology.html#runoff"><i class="fa fa-check"></i><b>5.4</b> Runoff, infiltration and percolation</a></li>
<li class="chapter" data-level="5.5" data-path="hydrology.html"><a href="hydrology.html#soilevaporation"><i class="fa fa-check"></i><b>5.5</b> Bare soil evaporation</a></li>
</ul></li>
<li class="chapter" data-level="6" data-path="transpirationgranier.html"><a href="transpirationgranier.html"><i class="fa fa-check"></i><b>6</b> Plant transpiration, photosynthesis and water status</a>
<ul>
<li class="chapter" data-level="6.1" data-path="transpirationgranier.html"><a href="transpirationgranier.html#plant-transpiration-and-photosynthesis"><i class="fa fa-check"></i><b>6.1</b> Plant transpiration and photosynthesis</a>
<ul>
<li class="chapter" data-level="6.1.1" data-path="transpirationgranier.html"><a href="transpirationgranier.html#maximumtranspiration"><i class="fa fa-check"></i><b>6.1.1</b> Maximum transpiration</a></li>
<li class="chapter" data-level="6.1.2" data-path="transpirationgranier.html"><a href="transpirationgranier.html#actualtranspiration"><i class="fa fa-check"></i><b>6.1.2</b> Actual plant transpiration and plant water potential</a></li>
<li class="chapter" data-level="6.1.3" data-path="transpirationgranier.html"><a href="transpirationgranier.html#plant-water-potential"><i class="fa fa-check"></i><b>6.1.3</b> Plant water potential</a></li>
<li class="chapter" data-level="6.1.4" data-path="transpirationgranier.html"><a href="transpirationgranier.html#minimum-transpiration"><i class="fa fa-check"></i><b>6.1.4</b> Minimum transpiration</a></li>
<li class="chapter" data-level="6.1.5" data-path="transpirationgranier.html"><a href="transpirationgranier.html#transpirationpools"><i class="fa fa-check"></i><b>6.1.5</b> Transpiration with water pools</a></li>
<li class="chapter" data-level="6.1.6" data-path="transpirationgranier.html"><a href="transpirationgranier.html#basicphotosynthesis"><i class="fa fa-check"></i><b>6.1.6</b> Plant photosynthesis</a></li>
</ul></li>
<li class="chapter" data-level="6.2" data-path="transpirationgranier.html"><a href="transpirationgranier.html#plant-drought-stress-and-cavitation"><i class="fa fa-check"></i><b>6.2</b> Plant drought stress and cavitation</a>
<ul>
<li class="chapter" data-level="6.2.1" data-path="transpirationgranier.html"><a href="transpirationgranier.html#dailystressbasicwater"><i class="fa fa-check"></i><b>6.2.1</b> Daily drought stress</a></li>
<li class="chapter" data-level="6.2.2" data-path="transpirationgranier.html"><a href="transpirationgranier.html#irreversiblecavitation"><i class="fa fa-check"></i><b>6.2.2</b> Cavitation and hydraulic recovery</a></li>
</ul></li>
<li class="chapter" data-level="6.3" data-path="transpirationgranier.html"><a href="transpirationgranier.html#plantwatercontent"><i class="fa fa-check"></i><b>6.3</b> Water content of plant tissues</a>
<ul>
<li class="chapter" data-level="6.3.1" data-path="transpirationgranier.html"><a href="transpirationgranier.html#pressurevolumecurves"><i class="fa fa-check"></i><b>6.3.1</b> Relative water content of symplasmic tissues</a></li>
<li class="chapter" data-level="6.3.2" data-path="transpirationgranier.html"><a href="transpirationgranier.html#relative-water-content-of-apoplastic-tissues"><i class="fa fa-check"></i><b>6.3.2</b> Relative water content of apoplastic tissues</a></li>
<li class="chapter" data-level="6.3.3" data-path="transpirationgranier.html"><a href="transpirationgranier.html#averagerelativewatercontent"><i class="fa fa-check"></i><b>6.3.3</b> Average relative water content of a segment</a></li>
<li class="chapter" data-level="6.3.4" data-path="transpirationgranier.html"><a href="transpirationgranier.html#live-fuel-moisture-content"><i class="fa fa-check"></i><b>6.3.4</b> Live fuel moisture content</a></li>
</ul></li>
</ul></li>
<li class="part"><span><b>III Advanced water balance modelling</b></span></li>
<li class="chapter" data-level="7" data-path="advancedwaterbalance.html"><a href="advancedwaterbalance.html"><i class="fa fa-check"></i><b>7</b> Advanced water balance model</a>
<ul>
<li class="chapter" data-level="7.1" data-path="advancedwaterbalance.html"><a href="advancedwaterbalance.html#advanceddesign"><i class="fa fa-check"></i><b>7.1</b> Design principles</a></li>
<li class="chapter" data-level="7.2" data-path="advancedwaterbalance.html"><a href="advancedwaterbalance.html#statevariablesadvanced"><i class="fa fa-check"></i><b>7.2</b> State variables</a></li>
<li class="chapter" data-level="7.3" data-path="advancedwaterbalance.html"><a href="advancedwaterbalance.html#waterenergybalances"><i class="fa fa-check"></i><b>7.3</b> Water and energy balances</a>
<ul>
<li class="chapter" data-level="7.3.1" data-path="advancedwaterbalance.html"><a href="advancedwaterbalance.html#water-balance"><i class="fa fa-check"></i><b>7.3.1</b> Water balance</a></li>
<li class="chapter" data-level="7.3.2" data-path="advancedwaterbalance.html"><a href="advancedwaterbalance.html#single-layer-canopy-energy-balance"><i class="fa fa-check"></i><b>7.3.2</b> Single-layer canopy energy balance</a></li>
<li class="chapter" data-level="7.3.3" data-path="advancedwaterbalance.html"><a href="advancedwaterbalance.html#multiple-layer-canopy-energy-balance"><i class="fa fa-check"></i><b>7.3.3</b> Multiple-layer canopy energy balance</a></li>
<li class="chapter" data-level="7.3.4" data-path="advancedwaterbalance.html"><a href="advancedwaterbalance.html#soil-energy-balance"><i class="fa fa-check"></i><b>7.3.4</b> Soil energy balance</a></li>
</ul></li>
<li class="chapter" data-level="7.4" data-path="advancedwaterbalance.html"><a href="advancedwaterbalance.html#advancedwaterbalancescheduling"><i class="fa fa-check"></i><b>7.4</b> Process scheduling</a></li>
<li class="chapter" data-level="7.5" data-path="advancedwaterbalance.html"><a href="advancedwaterbalance.html#inputs-and-outputs"><i class="fa fa-check"></i><b>7.5</b> Inputs and outputs</a>
<ul>
<li class="chapter" data-level="7.5.1" data-path="advancedwaterbalance.html"><a href="advancedwaterbalance.html#soil-vegetation-and-meteorology-1"><i class="fa fa-check"></i><b>7.5.1</b> Soil, vegetation and meteorology</a></li>
<li class="chapter" data-level="7.5.2" data-path="advancedwaterbalance.html"><a href="advancedwaterbalance.html#advancedwatervegetationparameters"><i class="fa fa-check"></i><b>7.5.2</b> Vegetation functional parameters</a></li>
<li class="chapter" data-level="7.5.3" data-path="advancedwaterbalance.html"><a href="advancedwaterbalance.html#advancedwaterbalancecontrol"><i class="fa fa-check"></i><b>7.5.3</b> Control parameters</a></li>
<li class="chapter" data-level="7.5.4" data-path="advancedwaterbalance.html"><a href="advancedwaterbalance.html#advancedwaterbalanceoutput"><i class="fa fa-check"></i><b>7.5.4</b> Model output</a></li>
</ul></li>
</ul></li>
<li class="chapter" data-level="8" data-path="subdailytemplight.html"><a href="subdailytemplight.html"><i class="fa fa-check"></i><b>8</b> Subdaily atmospheric temperature and radiation variation</a>
<ul>
<li class="chapter" data-level="8.1" data-path="subdailytemplight.html"><a href="subdailytemplight.html#above-canopy-air-temperature"><i class="fa fa-check"></i><b>8.1</b> Above-canopy air temperature</a></li>
<li class="chapter" data-level="8.2" data-path="subdailytemplight.html"><a href="subdailytemplight.html#directdiffuseSWR"><i class="fa fa-check"></i><b>8.2</b> Incoming diffuse and direct short-wave radiation</a></li>
<li class="chapter" data-level="8.3" data-path="subdailytemplight.html"><a href="subdailytemplight.html#longwaveatmradiation"><i class="fa fa-check"></i><b>8.3</b> Incoming long-wave radiation</a></li>
</ul></li>
<li class="chapter" data-level="9" data-path="radiationbalance.html"><a href="radiationbalance.html"><i class="fa fa-check"></i><b>9</b> Radiation transfer</a>
<ul>
<li class="chapter" data-level="9.1" data-path="radiationbalance.html"><a href="radiationbalance.html#shortwaveradiation"><i class="fa fa-check"></i><b>9.1</b> Short-wave radiation</a>
<ul>
<li class="chapter" data-level="9.1.1" data-path="radiationbalance.html"><a href="radiationbalance.html#irradiancecanopy"><i class="fa fa-check"></i><b>9.1.1</b> Direct and diffuse irradiance across the canopy</a></li>
<li class="chapter" data-level="9.1.2" data-path="radiationbalance.html"><a href="radiationbalance.html#sunlit-and-shade-leaves"><i class="fa fa-check"></i><b>9.1.2</b> Sunlit and shade leaves</a></li>
<li class="chapter" data-level="9.1.3" data-path="radiationbalance.html"><a href="radiationbalance.html#shortwaveradiationcanopyabs"><i class="fa fa-check"></i><b>9.1.3</b> Short-wave radiation absorbed by canopy elements</a></li>
<li class="chapter" data-level="9.1.4" data-path="radiationbalance.html"><a href="radiationbalance.html#shortwaveradiationsoilabs"><i class="fa fa-check"></i><b>9.1.4</b> Short-wave radiation absorbed by the soil</a></li>
</ul></li>
<li class="chapter" data-level="9.2" data-path="radiationbalance.html"><a href="radiationbalance.html#longwaveradiation"><i class="fa fa-check"></i><b>9.2</b> Long-wave radiation</a>
<ul>
<li class="chapter" data-level="9.2.1" data-path="radiationbalance.html"><a href="radiationbalance.html#longwaveradiationbalance"><i class="fa fa-check"></i><b>9.2.1</b> Long-wave radiation balance by canopy layers</a></li>
<li class="chapter" data-level="9.2.2" data-path="radiationbalance.html"><a href="radiationbalance.html#net-long-wave-radiation-of-the-whole-canopy-and-the-soil"><i class="fa fa-check"></i><b>9.2.2</b> Net long-wave radiation of the whole canopy and the soil</a></li>
<li class="chapter" data-level="9.2.3" data-path="radiationbalance.html"><a href="radiationbalance.html#longwaveradiationcohorts"><i class="fa fa-check"></i><b>9.2.3</b> Long-wave radiation balance by plant cohorts</a></li>
</ul></li>
</ul></li>
<li class="chapter" data-level="10" data-path="planthydraulics.html"><a href="planthydraulics.html"><i class="fa fa-check"></i><b>10</b> Plant hydraulics</a>
<ul>
<li class="chapter" data-level="10.1" data-path="planthydraulics.html"><a href="planthydraulics.html#vulnerabilitycurves"><i class="fa fa-check"></i><b>10.1</b> Vulnerability curves</a>
<ul>
<li class="chapter" data-level="10.1.1" data-path="planthydraulics.html"><a href="planthydraulics.html#xylem-vulnerability-curves"><i class="fa fa-check"></i><b>10.1.1</b> Xylem vulnerability curves</a></li>
<li class="chapter" data-level="10.1.2" data-path="planthydraulics.html"><a href="planthydraulics.html#rhizosphere-vulnerability-curve"><i class="fa fa-check"></i><b>10.1.2</b> Rhizosphere vulnerability curve</a></li>
<li class="chapter" data-level="10.1.3" data-path="planthydraulics.html"><a href="planthydraulics.html#xylem-sap-viscosity"><i class="fa fa-check"></i><b>10.1.3</b> Xylem sap viscosity</a></li>
</ul></li>
<li class="chapter" data-level="10.2" data-path="planthydraulics.html"><a href="planthydraulics.html#supplyfunctions"><i class="fa fa-check"></i><b>10.2</b> Supply functions</a>
<ul>
<li class="chapter" data-level="10.2.1" data-path="planthydraulics.html"><a href="planthydraulics.html#supply-function-for-a-single-xylem-element"><i class="fa fa-check"></i><b>10.2.1</b> Supply function for a single xylem element</a></li>
<li class="chapter" data-level="10.2.2" data-path="planthydraulics.html"><a href="planthydraulics.html#supply-function-of-two-elements-in-series"><i class="fa fa-check"></i><b>10.2.2</b> Supply function of two elements in series</a></li>
<li class="chapter" data-level="10.2.3" data-path="planthydraulics.html"><a href="planthydraulics.html#supply-function-of-three-elements-in-series"><i class="fa fa-check"></i><b>10.2.3</b> Supply function of three elements in series</a></li>
<li class="chapter" data-level="10.2.4" data-path="planthydraulics.html"><a href="planthydraulics.html#supply-function-of-a-root-system"><i class="fa fa-check"></i><b>10.2.4</b> Supply function of a root system</a></li>
<li class="chapter" data-level="10.2.5" data-path="planthydraulics.html"><a href="planthydraulics.html#supplycontinuum"><i class="fa fa-check"></i><b>10.2.5</b> Supply function of the soil-plant continuum</a></li>
</ul></li>
<li class="chapter" data-level="10.3" data-path="planthydraulics.html"><a href="planthydraulics.html#hydraulicswithcompartments"><i class="fa fa-check"></i><b>10.3</b> Plant hydraulics with water compartments</a>
<ul>
<li class="chapter" data-level="10.3.1" data-path="planthydraulics.html"><a href="planthydraulics.html#design"><i class="fa fa-check"></i><b>10.3.1</b> Design</a></li>
<li class="chapter" data-level="10.3.2" data-path="planthydraulics.html"><a href="planthydraulics.html#constitutiveequations"><i class="fa fa-check"></i><b>10.3.2</b> Constitutive equations</a></li>
<li class="chapter" data-level="10.3.3" data-path="planthydraulics.html"><a href="planthydraulics.html#implementation"><i class="fa fa-check"></i><b>10.3.3</b> Implementation</a></li>
</ul></li>
</ul></li>
<li class="chapter" data-level="11" data-path="plantphotosynthesis.html"><a href="plantphotosynthesis.html"><i class="fa fa-check"></i><b>11</b> Plant photosynthesis</a>
<ul>
<li class="chapter" data-level="11.1" data-path="plantphotosynthesis.html"><a href="plantphotosynthesis.html#leafenergybalancephoto"><i class="fa fa-check"></i><b>11.1</b> Leaf energy balance, gas exchange and photosynthesis</a>
<ul>
<li class="chapter" data-level="11.1.1" data-path="plantphotosynthesis.html"><a href="plantphotosynthesis.html#leaf-temperature"><i class="fa fa-check"></i><b>11.1.1</b> Leaf temperature</a></li>
<li class="chapter" data-level="11.1.2" data-path="plantphotosynthesis.html"><a href="plantphotosynthesis.html#leaf-vapor-pressure-deficit"><i class="fa fa-check"></i><b>11.1.2</b> Leaf vapor pressure deficit</a></li>
<li class="chapter" data-level="11.1.3" data-path="plantphotosynthesis.html"><a href="plantphotosynthesis.html#leaf-gas-exchange"><i class="fa fa-check"></i><b>11.1.3</b> Leaf gas exchange</a></li>
<li class="chapter" data-level="11.1.4" data-path="plantphotosynthesis.html"><a href="plantphotosynthesis.html#leafphotosynthesis"><i class="fa fa-check"></i><b>11.1.4</b> Leaf photosynthesis</a></li>
</ul></li>
<li class="chapter" data-level="11.2" data-path="plantphotosynthesis.html"><a href="plantphotosynthesis.html#crownphotosynthesis"><i class="fa fa-check"></i><b>11.2</b> Crown/canopy photosynthesis</a>
<ul>
<li class="chapter" data-level="11.2.1" data-path="plantphotosynthesis.html"><a href="plantphotosynthesis.html#multi-layer-canopy-photosynthesis-model"><i class="fa fa-check"></i><b>11.2.1</b> Multi-layer canopy photosynthesis model</a></li>
<li class="chapter" data-level="11.2.2" data-path="plantphotosynthesis.html"><a href="plantphotosynthesis.html#big-leaf-canopy-photosynthesis-model"><i class="fa fa-check"></i><b>11.2.2</b> Big-leaf canopy photosynthesis model</a></li>
<li class="chapter" data-level="11.2.3" data-path="plantphotosynthesis.html"><a href="plantphotosynthesis.html#sun-shade-canopy-photosynthesis-model"><i class="fa fa-check"></i><b>11.2.3</b> Sun-shade canopy photosynthesis model</a></li>
<li class="chapter" data-level="11.2.4" data-path="plantphotosynthesis.html"><a href="plantphotosynthesis.html#comparison-of-big-leaf-sun-shade-and-multi-canopy-photosynthesis-models"><i class="fa fa-check"></i><b>11.2.4</b> Comparison of big-leaf, sun-shade and multi-canopy photosynthesis models</a></li>
<li class="chapter" data-level="11.2.5" data-path="plantphotosynthesis.html"><a href="plantphotosynthesis.html#within-canopy-variation-in-environmental-conditions"><i class="fa fa-check"></i><b>11.2.5</b> Within-canopy variation in environmental conditions</a></li>
</ul></li>
</ul></li>
<li class="chapter" data-level="12" data-path="transpirationsperry.html"><a href="transpirationsperry.html"><i class="fa fa-check"></i><b>12</b> Transpiration and photosynthesis under Sperry’s model</a>
<ul>
<li class="chapter" data-level="12.1" data-path="transpirationsperry.html"><a href="transpirationsperry.html#water-supply-and-sunlitshade-photosynthesis-functions"><i class="fa fa-check"></i><b>12.1</b> Water supply and sunlit/shade photosynthesis functions</a></li>
<li class="chapter" data-level="12.2" data-path="transpirationsperry.html"><a href="transpirationsperry.html#stomatalregulation"><i class="fa fa-check"></i><b>12.2</b> Leaf stomatal regulation by profit maximization</a>
<ul>
<li class="chapter" data-level="12.2.1" data-path="transpirationsperry.html"><a href="transpirationsperry.html#cost-and-gain-functions"><i class="fa fa-check"></i><b>12.2.1</b> Cost and gain functions</a></li>
<li class="chapter" data-level="12.2.2" data-path="transpirationsperry.html"><a href="transpirationsperry.html#profit-maximization-at-the-leaf-level"><i class="fa fa-check"></i><b>12.2.2</b> Profit maximization at the leaf level</a></li>
</ul></li>
<li class="chapter" data-level="12.3" data-path="transpirationsperry.html"><a href="transpirationsperry.html#scalingtranspirationphotosynthesis"><i class="fa fa-check"></i><b>12.3</b> Plant cohort transpiration and photosynthesis</a></li>
<li class="chapter" data-level="12.4" data-path="transpirationsperry.html"><a href="transpirationsperry.html#cavitationrefill"><i class="fa fa-check"></i><b>12.4</b> Stem cavitation and conduit refilling</a></li>
</ul></li>
<li class="chapter" data-level="13" data-path="closecanopysoilenergybalance.html"><a href="closecanopysoilenergybalance.html"><i class="fa fa-check"></i><b>13</b> Closing energy balances</a>
<ul>
<li class="chapter" data-level="13.1" data-path="closecanopysoilenergybalance.html"><a href="closecanopysoilenergybalance.html#single-layer-canopy"><i class="fa fa-check"></i><b>13.1</b> Single-layer canopy</a>
<ul>
<li class="chapter" data-level="13.1.1" data-path="closecanopysoilenergybalance.html"><a href="closecanopysoilenergybalance.html#latent-heat"><i class="fa fa-check"></i><b>13.1.1</b> Latent heat</a></li>
<li class="chapter" data-level="13.1.2" data-path="closecanopysoilenergybalance.html"><a href="closecanopysoilenergybalance.html#convective-energy"><i class="fa fa-check"></i><b>13.1.2</b> Convective energy</a></li>
<li class="chapter" data-level="13.1.3" data-path="closecanopysoilenergybalance.html"><a href="closecanopysoilenergybalance.html#canopycapacitancetemperature"><i class="fa fa-check"></i><b>13.1.3</b> Canopy temperature changes</a></li>
<li class="chapter" data-level="13.1.4" data-path="closecanopysoilenergybalance.html"><a href="closecanopysoilenergybalance.html#soil-temperature-changes"><i class="fa fa-check"></i><b>13.1.4</b> Soil temperature changes</a></li>
</ul></li>
<li class="chapter" data-level="13.2" data-path="closecanopysoilenergybalance.html"><a href="closecanopysoilenergybalance.html#multi-layer-canopy"><i class="fa fa-check"></i><b>13.2</b> Multi-layer canopy</a>
<ul>
<li class="chapter" data-level="13.2.1" data-path="closecanopysoilenergybalance.html"><a href="closecanopysoilenergybalance.html#latent-heat-1"><i class="fa fa-check"></i><b>13.2.1</b> Latent heat</a></li>
<li class="chapter" data-level="13.2.2" data-path="closecanopysoilenergybalance.html"><a href="closecanopysoilenergybalance.html#sensible-heat-between-leaves-and-the-canopy-air-space"><i class="fa fa-check"></i><b>13.2.2</b> Sensible heat between leaves and the canopy air space</a></li>
<li class="chapter" data-level="13.2.3" data-path="closecanopysoilenergybalance.html"><a href="closecanopysoilenergybalance.html#turbulent-heat-exchange"><i class="fa fa-check"></i><b>13.2.3</b> Turbulent heat exchange</a></li>
<li class="chapter" data-level="13.2.4" data-path="closecanopysoilenergybalance.html"><a href="closecanopysoilenergybalance.html#canopy-and-soil-temperature-changes"><i class="fa fa-check"></i><b>13.2.4</b> Canopy and soil temperature changes</a></li>
<li class="chapter" data-level="13.2.5" data-path="closecanopysoilenergybalance.html"><a href="closecanopysoilenergybalance.html#within-canopy-changes-in-water-vapor-and-co_2"><i class="fa fa-check"></i><b>13.2.5</b> Within-canopy changes in water vapor and <span class="math inline">\(CO_2\)</span></a></li>
</ul></li>
</ul></li>
<li class="chapter" data-level="14" data-path="daylevelresults.html"><a href="daylevelresults.html"><i class="fa fa-check"></i><b>14</b> Day-level results</a>
<ul>
<li class="chapter" data-level="14.1" data-path="daylevelresults.html"><a href="daylevelresults.html#daylevelphototransp"><i class="fa fa-check"></i><b>14.1</b> Photosynthesis and transpiration</a></li>
<li class="chapter" data-level="14.2" data-path="daylevelresults.html"><a href="daylevelresults.html#plant-water-potentials-and-relative-water-contents"><i class="fa fa-check"></i><b>14.2</b> Plant water potentials and relative water contents</a></li>
<li class="chapter" data-level="14.3" data-path="daylevelresults.html"><a href="daylevelresults.html#advanceddroughtstress"><i class="fa fa-check"></i><b>14.3</b> Plant drought stress</a></li>
</ul></li>
<li class="part"><span><b>IV Forest growth modelling</b></span></li>
<li class="chapter" data-level="15" data-path="growthmodelling.html"><a href="growthmodelling.html"><i class="fa fa-check"></i><b>15</b> Forest growth model</a>
<ul>
<li class="chapter" data-level="15.1" data-path="growthmodelling.html"><a href="growthmodelling.html#growthdesign"><i class="fa fa-check"></i><b>15.1</b> Design principles</a>
<ul>
<li class="chapter" data-level="15.1.1" data-path="growthmodelling.html"><a href="growthmodelling.html#overview"><i class="fa fa-check"></i><b>15.1.1</b> Overview</a></li>
<li class="chapter" data-level="15.1.2" data-path="growthmodelling.html"><a href="growthmodelling.html#carbon-compartments-transport-and-carbon-balance"><i class="fa fa-check"></i><b>15.1.2</b> Carbon compartments, transport and carbon balance</a></li>
<li class="chapter" data-level="15.1.3" data-path="growthmodelling.html"><a href="growthmodelling.html#tissue-growth-senescence-and-allocation"><i class="fa fa-check"></i><b>15.1.3</b> Tissue growth, senescence and allocation</a></li>
<li class="chapter" data-level="15.1.4" data-path="growthmodelling.html"><a href="growthmodelling.html#carbonwaterlinks"><i class="fa fa-check"></i><b>15.1.4</b> Coordination between water and carbon balances</a></li>
<li class="chapter" data-level="15.1.5" data-path="growthmodelling.html"><a href="growthmodelling.html#mortalitydesign"><i class="fa fa-check"></i><b>15.1.5</b> Plant mortality</a></li>
<li class="chapter" data-level="15.1.6" data-path="growthmodelling.html"><a href="growthmodelling.html#tree-diameter-tree-height-and-shrub-cover-updates"><i class="fa fa-check"></i><b>15.1.6</b> Tree diameter, tree height and shrub cover updates</a></li>
</ul></li>
<li class="chapter" data-level="15.2" data-path="growthmodelling.html"><a href="growthmodelling.html#state-variables"><i class="fa fa-check"></i><b>15.2</b> State variables</a></li>
<li class="chapter" data-level="15.3" data-path="growthmodelling.html"><a href="growthmodelling.html#mass-and-energy-balances"><i class="fa fa-check"></i><b>15.3</b> Mass and energy balances</a>
<ul>
<li class="chapter" data-level="15.3.1" data-path="growthmodelling.html"><a href="growthmodelling.html#water-and-energy-balance"><i class="fa fa-check"></i><b>15.3.1</b> Water and energy balance</a></li>
<li class="chapter" data-level="15.3.2" data-path="growthmodelling.html"><a href="growthmodelling.html#labile-carbon-balance"><i class="fa fa-check"></i><b>15.3.2</b> Labile carbon balance</a></li>
<li class="chapter" data-level="15.3.3" data-path="growthmodelling.html"><a href="growthmodelling.html#biomass-balance"><i class="fa fa-check"></i><b>15.3.3</b> Biomass balance</a></li>
<li class="chapter" data-level="15.3.4" data-path="growthmodelling.html"><a href="growthmodelling.html#stand-level-carbon-balance"><i class="fa fa-check"></i><b>15.3.4</b> Stand-level carbon balance</a></li>
</ul></li>
<li class="chapter" data-level="15.4" data-path="growthmodelling.html"><a href="growthmodelling.html#growthscheduling"><i class="fa fa-check"></i><b>15.4</b> Process scheduling</a>
<ul>
<li class="chapter" data-level="15.4.1" data-path="growthmodelling.html"><a href="growthmodelling.html#basic-scheduling"><i class="fa fa-check"></i><b>15.4.1</b> Basic scheduling</a></li>
<li class="chapter" data-level="15.4.2" data-path="growthmodelling.html"><a href="growthmodelling.html#advanced-scheduling"><i class="fa fa-check"></i><b>15.4.2</b> Advanced scheduling</a></li>
</ul></li>
<li class="chapter" data-level="15.5" data-path="growthmodelling.html"><a href="growthmodelling.html#inputs-and-outputs-1"><i class="fa fa-check"></i><b>15.5</b> Inputs and outputs</a>
<ul>
<li class="chapter" data-level="15.5.1" data-path="growthmodelling.html"><a href="growthmodelling.html#soil-vegetation-and-meteorology-2"><i class="fa fa-check"></i><b>15.5.1</b> Soil, vegetation and meteorology</a></li>
<li class="chapter" data-level="15.5.2" data-path="growthmodelling.html"><a href="growthmodelling.html#growthvegetationparameters"><i class="fa fa-check"></i><b>15.5.2</b> Vegetation functional parameters</a></li>
<li class="chapter" data-level="15.5.3" data-path="growthmodelling.html"><a href="growthmodelling.html#forestgrowthcontrol"><i class="fa fa-check"></i><b>15.5.3</b> Control parameters</a></li>
<li class="chapter" data-level="15.5.4" data-path="growthmodelling.html"><a href="growthmodelling.html#forestgrowthoutput"><i class="fa fa-check"></i><b>15.5.4</b> Model output</a></li>
</ul></li>
</ul></li>
<li class="chapter" data-level="16" data-path="carbonpoolsbalance.html"><a href="carbonpoolsbalance.html"><i class="fa fa-check"></i><b>16</b> Carbon pools and components of the carbon balance</a>
<ul>
<li class="chapter" data-level="16.1" data-path="carbonpoolsbalance.html"><a href="carbonpoolsbalance.html#estimationcarbonpools"><i class="fa fa-check"></i><b>16.1</b> Size of carbon pools</a>
<ul>
<li class="chapter" data-level="16.1.1" data-path="carbonpoolsbalance.html"><a href="carbonpoolsbalance.html#leaf-structural-metabolic-and-storage-biomass"><i class="fa fa-check"></i><b>16.1.1</b> Leaf structural, metabolic and storage biomass</a></li>
<li class="chapter" data-level="16.1.2" data-path="carbonpoolsbalance.html"><a href="carbonpoolsbalance.html#sapwood-structural-metabolic-and-storage-biomass"><i class="fa fa-check"></i><b>16.1.2</b> Sapwood structural, metabolic and storage biomass</a></li>
<li class="chapter" data-level="16.1.3" data-path="carbonpoolsbalance.html"><a href="carbonpoolsbalance.html#fine-root-area-and-biomass"><i class="fa fa-check"></i><b>16.1.3</b> Fine root area and biomass</a></li>
<li class="chapter" data-level="16.1.4" data-path="carbonpoolsbalance.html"><a href="carbonpoolsbalance.html#total-living-biomass"><i class="fa fa-check"></i><b>16.1.4</b> Total living biomass</a></li>
</ul></li>
<li class="chapter" data-level="16.2" data-path="carbonpoolsbalance.html"><a href="carbonpoolsbalance.html#carbonbalancecomponents"><i class="fa fa-check"></i><b>16.2</b> Components of labile carbon balance</a>
<ul>
<li class="chapter" data-level="16.2.1" data-path="carbonpoolsbalance.html"><a href="carbonpoolsbalance.html#gross-photosynthesis"><i class="fa fa-check"></i><b>16.2.1</b> Gross photosynthesis</a></li>
<li class="chapter" data-level="16.2.2" data-path="carbonpoolsbalance.html"><a href="carbonpoolsbalance.html#maintenance-respiration"><i class="fa fa-check"></i><b>16.2.2</b> Maintenance respiration</a></li>
<li class="chapter" data-level="16.2.3" data-path="carbonpoolsbalance.html"><a href="carbonpoolsbalance.html#growth-respiration"><i class="fa fa-check"></i><b>16.2.3</b> Growth respiration</a></li>
<li class="chapter" data-level="16.2.4" data-path="carbonpoolsbalance.html"><a href="carbonpoolsbalance.html#phloemtransport"><i class="fa fa-check"></i><b>16.2.4</b> Phloem transport</a></li>
<li class="chapter" data-level="16.2.5" data-path="carbonpoolsbalance.html"><a href="carbonpoolsbalance.html#sugarstarchdynamics"><i class="fa fa-check"></i><b>16.2.5</b> Sugar-starch dynamics</a></li>
<li class="chapter" data-level="16.2.6" data-path="carbonpoolsbalance.html"><a href="carbonpoolsbalance.html#root-exudation"><i class="fa fa-check"></i><b>16.2.6</b> Root exudation</a></li>
</ul></li>
</ul></li>
<li class="chapter" data-level="17" data-path="growthsenescencemortality.html"><a href="growthsenescencemortality.html"><i class="fa fa-check"></i><b>17</b> Growth, senescence and mortality</a>
<ul>
<li class="chapter" data-level="17.1" data-path="growthsenescencemortality.html"><a href="growthsenescencemortality.html#growth"><i class="fa fa-check"></i><b>17.1</b> Growth</a>
<ul>
<li class="chapter" data-level="17.1.1" data-path="growthsenescencemortality.html"><a href="growthsenescencemortality.html#temperature-and-turgor-sink-limitations"><i class="fa fa-check"></i><b>17.1.1</b> Temperature and turgor sink limitations</a></li>
<li class="chapter" data-level="17.1.2" data-path="growthsenescencemortality.html"><a href="growthsenescencemortality.html#leafgrowth"><i class="fa fa-check"></i><b>17.1.2</b> Leaf growth</a></li>
<li class="chapter" data-level="17.1.3" data-path="growthsenescencemortality.html"><a href="growthsenescencemortality.html#sapwoodgrowth"><i class="fa fa-check"></i><b>17.1.3</b> Sapwood growth</a></li>
<li class="chapter" data-level="17.1.4" data-path="growthsenescencemortality.html"><a href="growthsenescencemortality.html#finerootgrowth"><i class="fa fa-check"></i><b>17.1.4</b> Fine root growth</a></li>
</ul></li>
<li class="chapter" data-level="17.2" data-path="growthsenescencemortality.html"><a href="growthsenescencemortality.html#senescence"><i class="fa fa-check"></i><b>17.2</b> Senescence</a>
<ul>
<li class="chapter" data-level="17.2.1" data-path="growthsenescencemortality.html"><a href="growthsenescencemortality.html#leafsenescence"><i class="fa fa-check"></i><b>17.2.1</b> Leaf senescence</a></li>
<li class="chapter" data-level="17.2.2" data-path="growthsenescencemortality.html"><a href="growthsenescencemortality.html#sapwoodsenescence"><i class="fa fa-check"></i><b>17.2.2</b> Sapwood senescence</a></li>
<li class="chapter" data-level="17.2.3" data-path="growthsenescencemortality.html"><a href="growthsenescencemortality.html#finerootsenescence"><i class="fa fa-check"></i><b>17.2.3</b> Fine root senescence</a></li>
</ul></li>
<li class="chapter" data-level="17.3" data-path="growthsenescencemortality.html"><a href="growthsenescencemortality.html#update-of-plant-traits-and-allocation-targets"><i class="fa fa-check"></i><b>17.3</b> Update of plant traits and allocation targets</a>
<ul>
<li class="chapter" data-level="17.3.1" data-path="growthsenescencemortality.html"><a href="growthsenescencemortality.html#updateplanttraits"><i class="fa fa-check"></i><b>17.3.1</b> Plant traits</a></li>
<li class="chapter" data-level="17.3.2" data-path="growthsenescencemortality.html"><a href="growthsenescencemortality.html#updateallocationtargets"><i class="fa fa-check"></i><b>17.3.2</b> Leaf area and fine root biomass targets</a></li>
</ul></li>
<li class="chapter" data-level="17.4" data-path="growthsenescencemortality.html"><a href="growthsenescencemortality.html#plantmortality"><i class="fa fa-check"></i><b>17.4</b> Plant mortality</a>
<ul>
<li class="chapter" data-level="17.4.1" data-path="growthsenescencemortality.html"><a href="growthsenescencemortality.html#mortalitythresholds"><i class="fa fa-check"></i><b>17.4.1</b> Plant mortality thresholds</a></li>
<li class="chapter" data-level="17.4.2" data-path="growthsenescencemortality.html"><a href="growthsenescencemortality.html#selfthinning"><i class="fa fa-check"></i><b>17.4.2</b> Self-thinning of small trees</a></li>
</ul></li>
<li class="chapter" data-level="17.5" data-path="growthsenescencemortality.html"><a href="growthsenescencemortality.html#structuralupdate"><i class="fa fa-check"></i><b>17.5</b> Update of structural variables</a>
<ul>
<li class="chapter" data-level="17.5.1" data-path="growthsenescencemortality.html"><a href="growthsenescencemortality.html#tree-diameter-height-and-crown-ratio"><i class="fa fa-check"></i><b>17.5.1</b> Tree diameter, height and crown ratio</a></li>
<li class="chapter" data-level="17.5.2" data-path="growthsenescencemortality.html"><a href="growthsenescencemortality.html#shrub-height-and-cover"><i class="fa fa-check"></i><b>17.5.2</b> Shrub height and cover</a></li>
</ul></li>
</ul></li>
<li class="part"><span><b>V Forest dynamics modelling</b></span></li>
<li class="chapter" data-level="18" data-path="dynamicsmodelling.html"><a href="dynamicsmodelling.html"><i class="fa fa-check"></i><b>18</b> Forest dynamics model</a>
<ul>
<li class="chapter" data-level="18.1" data-path="dynamicsmodelling.html"><a href="dynamicsmodelling.html#design-principles"><i class="fa fa-check"></i><b>18.1</b> Design principles</a>
<ul>
<li class="chapter" data-level="18.1.1" data-path="dynamicsmodelling.html"><a href="dynamicsmodelling.html#recruitment-from-seeds"><i class="fa fa-check"></i><b>18.1.1</b> Recruitment from seeds</a></li>
<li class="chapter" data-level="18.1.2" data-path="dynamicsmodelling.html"><a href="dynamicsmodelling.html#resprouting"><i class="fa fa-check"></i><b>18.1.2</b> Resprouting</a></li>
<li class="chapter" data-level="18.1.3" data-path="dynamicsmodelling.html"><a href="dynamicsmodelling.html#forest-management"><i class="fa fa-check"></i><b>18.1.3</b> Forest management</a></li>
</ul></li>
<li class="chapter" data-level="18.2" data-path="dynamicsmodelling.html"><a href="dynamicsmodelling.html#state-variables-1"><i class="fa fa-check"></i><b>18.2</b> State variables</a></li>
<li class="chapter" data-level="18.3" data-path="dynamicsmodelling.html"><a href="dynamicsmodelling.html#process-scheduling"><i class="fa fa-check"></i><b>18.3</b> Process scheduling</a></li>
<li class="chapter" data-level="18.4" data-path="dynamicsmodelling.html"><a href="dynamicsmodelling.html#inputs-and-outputs-2"><i class="fa fa-check"></i><b>18.4</b> Inputs and outputs</a>
<ul>
<li class="chapter" data-level="18.4.1" data-path="dynamicsmodelling.html"><a href="dynamicsmodelling.html#soil-vegetation-and-meteorology-3"><i class="fa fa-check"></i><b>18.4.1</b> Soil, vegetation and meteorology</a></li>
<li class="chapter" data-level="18.4.2" data-path="dynamicsmodelling.html"><a href="dynamicsmodelling.html#vegetation-functional-parameters"><i class="fa fa-check"></i><b>18.4.2</b> Vegetation functional parameters</a></li>
<li class="chapter" data-level="18.4.3" data-path="dynamicsmodelling.html"><a href="dynamicsmodelling.html#forestdynamicscontrol"><i class="fa fa-check"></i><b>18.4.3</b> Control parameters</a></li>
<li class="chapter" data-level="18.4.4" data-path="dynamicsmodelling.html"><a href="dynamicsmodelling.html#forestdynamicsoutput"><i class="fa fa-check"></i><b>18.4.4</b> Model output</a></li>
</ul></li>
<li class="chapter" data-level="18.5" data-path="dynamicsmodelling.html"><a href="dynamicsmodelling.html#process-details"><i class="fa fa-check"></i><b>18.5</b> Process details</a>
<ul>
<li class="chapter" data-level="18.5.1" data-path="dynamicsmodelling.html"><a href="dynamicsmodelling.html#recruitment-from-seeds-1"><i class="fa fa-check"></i><b>18.5.1</b> Recruitment from seeds</a></li>
<li class="chapter" data-level="18.5.2" data-path="dynamicsmodelling.html"><a href="dynamicsmodelling.html#resprouting-1"><i class="fa fa-check"></i><b>18.5.2</b> Resprouting</a></li>
</ul></li>
</ul></li>
<li class="part"><span><b>VI Landscape modelling</b></span></li>
<li class="chapter" data-level="19" data-path="watershedhydrology.html"><a href="watershedhydrology.html"><i class="fa fa-check"></i><b>19</b> Watershed hydrology</a>
<ul>
<li class="chapter" data-level="19.1" data-path="watershedhydrology.html"><a href="watershedhydrology.html#design-principles-1"><i class="fa fa-check"></i><b>19.1</b> Design principles</a></li>
<li class="chapter" data-level="19.2" data-path="watershedhydrology.html"><a href="watershedhydrology.html#statevariableswatershed"><i class="fa fa-check"></i><b>19.2</b> State variables</a></li>
<li class="chapter" data-level="19.3" data-path="watershedhydrology.html"><a href="watershedhydrology.html#watershedbalance"><i class="fa fa-check"></i><b>19.3</b> Water balance</a>
<ul>
<li class="chapter" data-level="19.3.1" data-path="watershedhydrology.html"><a href="watershedhydrology.html#cell-level-water-balance"><i class="fa fa-check"></i><b>19.3.1</b> Cell level water balance</a></li>
<li class="chapter" data-level="19.3.2" data-path="watershedhydrology.html"><a href="watershedhydrology.html#watershed-water-balance"><i class="fa fa-check"></i><b>19.3.2</b> Watershed water balance</a></li>
</ul></li>
<li class="chapter" data-level="19.4" data-path="watershedhydrology.html"><a href="watershedhydrology.html#watershedbalancescheduling"><i class="fa fa-check"></i><b>19.4</b> Process scheduling</a></li>
<li class="chapter" data-level="19.5" data-path="watershedhydrology.html"><a href="watershedhydrology.html#inputs-and-outputs-3"><i class="fa fa-check"></i><b>19.5</b> Inputs and outputs</a>
<ul>
<li class="chapter" data-level="19.5.1" data-path="watershedhydrology.html"><a href="watershedhydrology.html#gridded-inputs"><i class="fa fa-check"></i><b>19.5.1</b> Gridded inputs</a></li>
<li class="chapter" data-level="19.5.2" data-path="watershedhydrology.html"><a href="watershedhydrology.html#watershed-meteorology-input"><i class="fa fa-check"></i><b>19.5.2</b> Watershed meteorology input</a></li>
<li class="chapter" data-level="19.5.3" data-path="watershedhydrology.html"><a href="watershedhydrology.html#watershedbalancecontrol"><i class="fa fa-check"></i><b>19.5.3</b> Watershed hydraulic correction parameters</a></li>
<li class="chapter" data-level="19.5.4" data-path="watershedhydrology.html"><a href="watershedhydrology.html#watershedbalanceoutput"><i class="fa fa-check"></i><b>19.5.4</b> Model outputs</a></li>
</ul></li>
<li class="chapter" data-level="19.6" data-path="watershedhydrology.html"><a href="watershedhydrology.html#watershedbalancedetails"><i class="fa fa-check"></i><b>19.6</b> Process details</a>
<ul>
<li class="chapter" data-level="19.6.1" data-path="watershedhydrology.html"><a href="watershedhydrology.html#subsurfaceflows"><i class="fa fa-check"></i><b>19.6.1</b> Subsurface flows</a></li>
<li class="chapter" data-level="19.6.2" data-path="watershedhydrology.html"><a href="watershedhydrology.html#overlandflows"><i class="fa fa-check"></i><b>19.6.2</b> Overland flows</a></li>
<li class="chapter" data-level="19.6.3" data-path="watershedhydrology.html"><a href="watershedhydrology.html#watershed-runoff"><i class="fa fa-check"></i><b>19.6.3</b> Watershed runoff</a></li>
</ul></li>
</ul></li>
<li class="part"><span><b>VII Static modules</b></span></li>
<li class="chapter" data-level="20" data-path="allometricmodels.html"><a href="allometricmodels.html"><i class="fa fa-check"></i><b>20</b> Allometric models</a>
<ul>
<li class="chapter" data-level="20.1" data-path="allometricmodels.html"><a href="allometricmodels.html#input-data"><i class="fa fa-check"></i><b>20.1</b> Input data</a>
<ul>
<li class="chapter" data-level="20.1.1" data-path="allometricmodels.html"><a href="allometricmodels.html#forest-plot-data"><i class="fa fa-check"></i><b>20.1.1</b> Forest plot data</a></li>
<li class="chapter" data-level="20.1.2" data-path="allometricmodels.html"><a href="allometricmodels.html#species-parameters"><i class="fa fa-check"></i><b>20.1.2</b> Species parameters</a></li>
</ul></li>
<li class="chapter" data-level="20.2" data-path="allometricmodels.html"><a href="allometricmodels.html#allometric-relationships"><i class="fa fa-check"></i><b>20.2</b> Allometric relationships</a>
<ul>
<li class="chapter" data-level="20.2.1" data-path="allometricmodels.html"><a href="allometricmodels.html#leaf-biomass"><i class="fa fa-check"></i><b>20.2.1</b> Leaf biomass</a></li>
<li class="chapter" data-level="20.2.2" data-path="allometricmodels.html"><a href="allometricmodels.html#leaf-area-and-lai"><i class="fa fa-check"></i><b>20.2.2</b> Leaf area and LAI</a></li>
<li class="chapter" data-level="20.2.3" data-path="allometricmodels.html"><a href="allometricmodels.html#crownbaseheight"><i class="fa fa-check"></i><b>20.2.3</b> Crown vertical dimensions</a></li>
</ul></li>
</ul></li>
<li class="chapter" data-level="21" data-path="post-simulation-procedures.html"><a href="post-simulation-procedures.html"><i class="fa fa-check"></i><b>21</b> Post-simulation procedures</a>
<ul>
<li class="chapter" data-level="21.1" data-path="post-simulation-procedures.html"><a href="post-simulation-procedures.html#water-use-efficiency"><i class="fa fa-check"></i><b>21.1</b> Water use efficiency</a></li>
</ul></li>
<li class="chapter" data-level="22" data-path="windextinction.html"><a href="windextinction.html"><i class="fa fa-check"></i><b>22</b> Wind extinction</a>
<ul>
<li class="chapter" data-level="22.1" data-path="windextinction.html"><a href="windextinction.html#wind-speed-at-the-top-of-the-canopy"><i class="fa fa-check"></i><b>22.1</b> Wind speed at the top of the canopy</a></li>
<li class="chapter" data-level="22.2" data-path="windextinction.html"><a href="windextinction.html#windextinctionprofile"><i class="fa fa-check"></i><b>22.2</b> Wind extinction profile</a></li>
</ul></li>
<li class="chapter" data-level="23" data-path="fuel-characteristics-and-fire-behaviour.html"><a href="fuel-characteristics-and-fire-behaviour.html"><i class="fa fa-check"></i><b>23</b> Fuel characteristics and fire behaviour</a>
<ul>
<li class="chapter" data-level="23.1" data-path="fuel-characteristics-and-fire-behaviour.html"><a href="fuel-characteristics-and-fire-behaviour.html#overview-1"><i class="fa fa-check"></i><b>23.1</b> Overview</a></li>
<li class="chapter" data-level="23.2" data-path="fuel-characteristics-and-fire-behaviour.html"><a href="fuel-characteristics-and-fire-behaviour.html#input-data-1"><i class="fa fa-check"></i><b>23.2</b> Input data</a>
<ul>
<li class="chapter" data-level="23.2.1" data-path="fuel-characteristics-and-fire-behaviour.html"><a href="fuel-characteristics-and-fire-behaviour.html#forest-plot-data-1"><i class="fa fa-check"></i><b>23.2.1</b> Forest plot data</a></li>
<li class="chapter" data-level="23.2.2" data-path="fuel-characteristics-and-fire-behaviour.html"><a href="fuel-characteristics-and-fire-behaviour.html#species-parameters-1"><i class="fa fa-check"></i><b>23.2.2</b> Species parameters</a></li>
<li class="chapter" data-level="23.2.3" data-path="fuel-characteristics-and-fire-behaviour.html"><a href="fuel-characteristics-and-fire-behaviour.html#other-inputs"><i class="fa fa-check"></i><b>23.2.3</b> Other inputs</a></li>
</ul></li>
<li class="chapter" data-level="23.3" data-path="fuel-characteristics-and-fire-behaviour.html"><a href="fuel-characteristics-and-fire-behaviour.html#fuel-characteristics"><i class="fa fa-check"></i><b>23.3</b> Fuel characteristics</a>
<ul>
<li class="chapter" data-level="23.3.1" data-path="fuel-characteristics-and-fire-behaviour.html"><a href="fuel-characteristics-and-fire-behaviour.html#fuel-strata"><i class="fa fa-check"></i><b>23.3.1</b> Fuel strata</a></li>
<li class="chapter" data-level="23.3.2" data-path="fuel-characteristics-and-fire-behaviour.html"><a href="fuel-characteristics-and-fire-behaviour.html#cohort-fuel-loading"><i class="fa fa-check"></i><b>23.3.2</b> Cohort fuel loading</a></li>
<li class="chapter" data-level="23.3.3" data-path="fuel-characteristics-and-fire-behaviour.html"><a href="fuel-characteristics-and-fire-behaviour.html#vertical-distribution-of-cohort-fuels"><i class="fa fa-check"></i><b>23.3.3</b> Vertical distribution of cohort fuels</a></li>
<li class="chapter" data-level="23.3.4" data-path="fuel-characteristics-and-fire-behaviour.html"><a href="fuel-characteristics-and-fire-behaviour.html#fuel-bulk-density-profile"><i class="fa fa-check"></i><b>23.3.4</b> Fuel bulk density profile</a></li>
<li class="chapter" data-level="23.3.5" data-path="fuel-characteristics-and-fire-behaviour.html"><a href="fuel-characteristics-and-fire-behaviour.html#fuel-loading-w-and-fuel-depth-delta"><i class="fa fa-check"></i><b>23.3.5</b> Fuel loading (<span class="math inline">\(w\)</span>) and fuel depth (<span class="math inline">\(\delta\)</span>)</a></li>
<li class="chapter" data-level="23.3.6" data-path="fuel-characteristics-and-fire-behaviour.html"><a href="fuel-characteristics-and-fire-behaviour.html#other-fuel-characteristics"><i class="fa fa-check"></i><b>23.3.6</b> Other fuel characteristics</a></li>
<li class="chapter" data-level="23.3.7" data-path="fuel-characteristics-and-fire-behaviour.html"><a href="fuel-characteristics-and-fire-behaviour.html#unit-conversion-of-fuel-characteristics"><i class="fa fa-check"></i><b>23.3.7</b> Unit conversion of fuel characteristics</a></li>
</ul></li>
<li class="chapter" data-level="23.4" data-path="fuel-characteristics-and-fire-behaviour.html"><a href="fuel-characteristics-and-fire-behaviour.html#surface-fire-behavior"><i class="fa fa-check"></i><b>23.4</b> Surface fire behavior</a>
<ul>
<li class="chapter" data-level="23.4.1" data-path="fuel-characteristics-and-fire-behaviour.html"><a href="fuel-characteristics-and-fire-behaviour.html#surface-rate-of-spread-r"><i class="fa fa-check"></i><b>23.4.1</b> Surface rate of spread (<span class="math inline">\(R\)</span>)</a></li>
<li class="chapter" data-level="23.4.2" data-path="fuel-characteristics-and-fire-behaviour.html"><a href="fuel-characteristics-and-fire-behaviour.html#heat-sink-q"><i class="fa fa-check"></i><b>23.4.2</b> Heat sink (<span class="math inline">\(q\)</span>)</a></li>
<li class="chapter" data-level="23.4.3" data-path="fuel-characteristics-and-fire-behaviour.html"><a href="fuel-characteristics-and-fire-behaviour.html#fireline-intensity-i_b-and-flame-length-fl"><i class="fa fa-check"></i><b>23.4.3</b> Fireline intensity (<span class="math inline">\(I_B\)</span>) and flame length (<span class="math inline">\(FL\)</span>)</a></li>
</ul></li>
<li class="chapter" data-level="23.5" data-path="fuel-characteristics-and-fire-behaviour.html"><a href="fuel-characteristics-and-fire-behaviour.html#crown-fire-behavior"><i class="fa fa-check"></i><b>23.5</b> Crown fire behavior</a>
<ul>
<li class="chapter" data-level="23.5.1" data-path="fuel-characteristics-and-fire-behaviour.html"><a href="fuel-characteristics-and-fire-behaviour.html#canopy-reaction-intensity-i_r-ca"><i class="fa fa-check"></i><b>23.5.1</b> Canopy reaction intensity (<span class="math inline">\(I_{R, ca}\)</span>)</a></li>
<li class="chapter" data-level="23.5.2" data-path="fuel-characteristics-and-fire-behaviour.html"><a href="fuel-characteristics-and-fire-behaviour.html#canopy-heat-sink-q_ca"><i class="fa fa-check"></i><b>23.5.2</b> Canopy heat sink (<span class="math inline">\(q_{ca}\)</span>)</a></li>
<li class="chapter" data-level="23.5.3" data-path="fuel-characteristics-and-fire-behaviour.html"><a href="fuel-characteristics-and-fire-behaviour.html#fireline-intensity-i_bcrown-and-flame-length-fl_crown"><i class="fa fa-check"></i><b>23.5.3</b> Fireline intensity (<span class="math inline">\(I_{B,crown}\)</span>) and flame length (<span class="math inline">\(FL_{crown}\)</span>)</a></li>
</ul></li>
<li class="chapter" data-level="23.6" data-path="fuel-characteristics-and-fire-behaviour.html"><a href="fuel-characteristics-and-fire-behaviour.html#fire-potentials"><i class="fa fa-check"></i><b>23.6</b> Fire potentials</a>
<ul>
<li class="chapter" data-level="23.6.1" data-path="fuel-characteristics-and-fire-behaviour.html"><a href="fuel-characteristics-and-fire-behaviour.html#surface-fire-behavior-potentials"><i class="fa fa-check"></i><b>23.6.1</b> Surface fire behavior potentials</a></li>
<li class="chapter" data-level="23.6.2" data-path="fuel-characteristics-and-fire-behaviour.html"><a href="fuel-characteristics-and-fire-behaviour.html#crown-fire-behavior-potentials"><i class="fa fa-check"></i><b>23.6.2</b> Crown fire behavior potentials</a></li>
</ul></li>
<li class="chapter" data-level="23.7" data-path="fuel-characteristics-and-fire-behaviour.html"><a href="fuel-characteristics-and-fire-behaviour.html#unit-conversion-of-outputs"><i class="fa fa-check"></i><b>23.7</b> Unit conversion of outputs</a></li>
</ul></li>
<li class="appendix"><span><b>Appendices</b></span></li>
<li class="chapter" data-level="A" data-path="modelparametrization.html"><a href="modelparametrization.html"><i class="fa fa-check"></i><b>A</b> Inbuilt parameter estimation</a>
<ul>
<li class="chapter" data-level="A.1" data-path="modelparametrization.html"><a href="modelparametrization.html#introduction"><i class="fa fa-check"></i><b>A.1</b> Introduction</a></li>
<li class="chapter" data-level="A.2" data-path="modelparametrization.html"><a href="modelparametrization.html#strict-scaled-and-imputable-parameters"><i class="fa fa-check"></i><b>A.2</b> Strict, scaled and imputable parameters</a></li>
<li class="chapter" data-level="A.3" data-path="modelparametrization.html"><a href="modelparametrization.html#imputation-of-missing-values"><i class="fa fa-check"></i><b>A.3</b> Imputation of missing values</a>
<ul>
<li class="chapter" data-level="A.3.1" data-path="modelparametrization.html"><a href="modelparametrization.html#imputationShrubAllometries"><i class="fa fa-check"></i><b>A.3.1</b> Shrub allometric coefficients</a></li>
<li class="chapter" data-level="A.3.2" data-path="modelparametrization.html"><a href="modelparametrization.html#imputationTreeAllometries"><i class="fa fa-check"></i><b>A.3.2</b> Tree allometric coefficients</a></li>
<li class="chapter" data-level="A.3.3" data-path="modelparametrization.html"><a href="modelparametrization.html#imputationLWSLA"><i class="fa fa-check"></i><b>A.3.3</b> Leaf width, specific leaf area and fine foliar ratio</a></li>
<li class="chapter" data-level="A.3.4" data-path="modelparametrization.html"><a href="modelparametrization.html#imputationtissuedensity"><i class="fa fa-check"></i><b>A.3.4</b> Tissue density</a></li>
<li class="chapter" data-level="A.3.5" data-path="modelparametrization.html"><a href="modelparametrization.html#imputationSRLRLD"><i class="fa fa-check"></i><b>A.3.5</b> Specific root length and root length density</a></li>
<li class="chapter" data-level="A.3.6" data-path="modelparametrization.html"><a href="modelparametrization.html#imputationAl2As"><i class="fa fa-check"></i><b>A.3.6</b> Huber value and ratio of conduits to sapwood</a></li>
<li class="chapter" data-level="A.3.7" data-path="modelparametrization.html"><a href="modelparametrization.html#imputationAr2Al"><i class="fa fa-check"></i><b>A.3.7</b> Fine root to leaf area ratio</a></li>
<li class="chapter" data-level="A.3.8" data-path="modelparametrization.html"><a href="modelparametrization.html#imputationphenology"><i class="fa fa-check"></i><b>A.3.8</b> Leaf phenology</a></li>
<li class="chapter" data-level="A.3.9" data-path="modelparametrization.html"><a href="modelparametrization.html#imputationtranspwue"><i class="fa fa-check"></i><b>A.3.9</b> Basic transpiration and water-use efficiency</a></li>
<li class="chapter" data-level="A.3.10" data-path="modelparametrization.html"><a href="modelparametrization.html#imputationLEWI"><i class="fa fa-check"></i><b>A.3.10</b> Radiation balance and water interception</a></li>
<li class="chapter" data-level="A.3.11" data-path="modelparametrization.html"><a href="modelparametrization.html#imputationstomatalconductance"><i class="fa fa-check"></i><b>A.3.11</b> Stomatal conductance</a></li>
<li class="chapter" data-level="A.3.12" data-path="modelparametrization.html"><a href="modelparametrization.html#inputationPV"><i class="fa fa-check"></i><b>A.3.12</b> Pressure-volume curves</a></li>
<li class="chapter" data-level="A.3.13" data-path="modelparametrization.html"><a href="modelparametrization.html#imputationKstemKroot"><i class="fa fa-check"></i><b>A.3.13</b> Stem and root maximum hydraulic conductivity</a></li>
<li class="chapter" data-level="A.3.14" data-path="modelparametrization.html"><a href="modelparametrization.html#imputationkleaf"><i class="fa fa-check"></i><b>A.3.14</b> Leaf maximum hydraulic conductance</a></li>
<li class="chapter" data-level="A.3.15" data-path="modelparametrization.html"><a href="modelparametrization.html#imputationVCs"><i class="fa fa-check"></i><b>A.3.15</b> Xylem vulnerability</a></li>
<li class="chapter" data-level="A.3.16" data-path="modelparametrization.html"><a href="modelparametrization.html#imputationphotosynthesis"><i class="fa fa-check"></i><b>A.3.16</b> Photosynthesis rates</a></li>
<li class="chapter" data-level="A.3.17" data-path="modelparametrization.html"><a href="modelparametrization.html#imputationRER"><i class="fa fa-check"></i><b>A.3.17</b> Maintenance respiration rates</a></li>
<li class="chapter" data-level="A.3.18" data-path="modelparametrization.html"><a href="modelparametrization.html#imputationRGR"><i class="fa fa-check"></i><b>A.3.18</b> Relative growth rates</a></li>
<li class="chapter" data-level="A.3.19" data-path="modelparametrization.html"><a href="modelparametrization.html#imputationSR"><i class="fa fa-check"></i><b>A.3.19</b> Senescence rates</a></li>
<li class="chapter" data-level="A.3.20" data-path="modelparametrization.html"><a href="modelparametrization.html#imputationRSSG"><i class="fa fa-check"></i><b>A.3.20</b> Relative starch for sapwood growth</a></li>
<li class="chapter" data-level="A.3.21" data-path="modelparametrization.html"><a href="modelparametrization.html#imputationCwood"><i class="fa fa-check"></i><b>A.3.21</b> Wood carbon</a></li>
<li class="chapter" data-level="A.3.22" data-path="modelparametrization.html"><a href="modelparametrization.html#imputationMortalityBaseline"><i class="fa fa-check"></i><b>A.3.22</b> Mortality baseline rate</a></li>
<li class="chapter" data-level="A.3.23" data-path="modelparametrization.html"><a href="modelparametrization.html#imputationrecruitment"><i class="fa fa-check"></i><b>A.3.23</b> Recruitment</a></li>
<li class="chapter" data-level="A.3.24" data-path="modelparametrization.html"><a href="modelparametrization.html#imputationflammability"><i class="fa fa-check"></i><b>A.3.24</b> Flammability</a></li>
</ul></li>
<li class="chapter" data-level="A.4" data-path="modelparametrization.html"><a href="modelparametrization.html#scaling-size-related-parameters"><i class="fa fa-check"></i><b>A.4</b> Scaling size-related parameters</a>
<ul>
<li class="chapter" data-level="A.4.1" data-path="modelparametrization.html"><a href="modelparametrization.html#scalingkstem"><i class="fa fa-check"></i><b>A.4.1</b> Stem xylem maximum conductance</a></li>
<li class="chapter" data-level="A.4.2" data-path="modelparametrization.html"><a href="modelparametrization.html#scalingkleaf"><i class="fa fa-check"></i><b>A.4.2</b> Leaf maximum hydraulic conductance</a></li>
<li class="chapter" data-level="A.4.3" data-path="modelparametrization.html"><a href="modelparametrization.html#scalingkroot"><i class="fa fa-check"></i><b>A.4.3</b> Root xylem maximum hydraulic conductance</a></li>
<li class="chapter" data-level="A.4.4" data-path="modelparametrization.html"><a href="modelparametrization.html#scalingkrhizo"><i class="fa fa-check"></i><b>A.4.4</b> Rhizosphere maximum hydraulic conductance</a></li>
<li class="chapter" data-level="A.4.5" data-path="modelparametrization.html"><a href="modelparametrization.html#plantwaterstoragecapacity"><i class="fa fa-check"></i><b>A.4.5</b> Plant water storage capacity</a></li>
<li class="chapter" data-level="A.4.6" data-path="modelparametrization.html"><a href="modelparametrization.html#horizontalrootoverlap"><i class="fa fa-check"></i><b>A.4.6</b> Horizontal root overlap</a></li>
</ul></li>
</ul></li>
<li class="chapter" data-level="B" data-path="symbols.html"><a href="symbols.html"><i class="fa fa-check"></i><b>B</b> Symbols</a>
<ul>
<li class="chapter" data-level="B.1" data-path="symbols.html"><a href="symbols.html#dimensions"><i class="fa fa-check"></i><b>B.1</b> Dimensions</a></li>
<li class="chapter" data-level="B.2" data-path="symbols.html"><a href="symbols.html#soils"><i class="fa fa-check"></i><b>B.2</b> Soils</a></li>
<li class="chapter" data-level="B.3" data-path="symbols.html"><a href="symbols.html#plantleaf-classification"><i class="fa fa-check"></i><b>B.3</b> Plant/leaf classification</a></li>
<li class="chapter" data-level="B.4" data-path="symbols.html"><a href="symbols.html#vegetation"><i class="fa fa-check"></i><b>B.4</b> Vegetation</a></li>
<li class="chapter" data-level="B.5" data-path="symbols.html"><a href="symbols.html#meteorology"><i class="fa fa-check"></i><b>B.5</b> Meteorology</a></li>
<li class="chapter" data-level="B.6" data-path="symbols.html"><a href="symbols.html#anatomy"><i class="fa fa-check"></i><b>B.6</b> Anatomy</a></li>
<li class="chapter" data-level="B.7" data-path="symbols.html"><a href="symbols.html#radiation"><i class="fa fa-check"></i><b>B.7</b> Radiation</a></li>
<li class="chapter" data-level="B.8" data-path="symbols.html"><a href="symbols.html#water-balance-1"><i class="fa fa-check"></i><b>B.8</b> Water balance</a></li>
<li class="chapter" data-level="B.9" data-path="symbols.html"><a href="symbols.html#energy-balance"><i class="fa fa-check"></i><b>B.9</b> Energy balance</a></li>
<li class="chapter" data-level="B.10" data-path="symbols.html"><a href="symbols.html#forest-hydrology"><i class="fa fa-check"></i><b>B.10</b> Forest hydrology</a></li>
<li class="chapter" data-level="B.11" data-path="symbols.html"><a href="symbols.html#plant-hydraulics"><i class="fa fa-check"></i><b>B.11</b> Plant hydraulics</a></li>
<li class="chapter" data-level="B.12" data-path="symbols.html"><a href="symbols.html#photosynthesis"><i class="fa fa-check"></i><b>B.12</b> Photosynthesis</a></li>
<li class="chapter" data-level="B.13" data-path="symbols.html"><a href="symbols.html#plant-water-content"><i class="fa fa-check"></i><b>B.13</b> Plant water content</a></li>
<li class="chapter" data-level="B.14" data-path="symbols.html"><a href="symbols.html#stomatal-regulation"><i class="fa fa-check"></i><b>B.14</b> Stomatal regulation</a></li>
<li class="chapter" data-level="B.15" data-path="symbols.html"><a href="symbols.html#carbon-pools"><i class="fa fa-check"></i><b>B.15</b> Carbon pools</a></li>
<li class="chapter" data-level="B.16" data-path="symbols.html"><a href="symbols.html#carbon-balance"><i class="fa fa-check"></i><b>B.16</b> Carbon balance</a></li>
<li class="chapter" data-level="B.17" data-path="symbols.html"><a href="symbols.html#growth-senescence-and-mortality"><i class="fa fa-check"></i><b>B.17</b> Growth, senescence and mortality</a></li>
</ul></li>
<li class="chapter" data-level="" data-path="bibliography.html"><a href="bibliography.html"><i class="fa fa-check"></i>Bibliography</a></li>
<li class="divider"></li>
<li><a href="https://github.com/rstudio/bookdown" target="blank">Published with bookdown</a></li>
</ul>
</nav>
</div>
<div class="book-body">
<div class="body-inner">
<div class="book-header" role="navigation">
<h1>
<i class="fa fa-circle-o-notch fa-spin"></i><a href="./">The medfate reference book</a>
</h1>
</div>
<div class="page-wrapper" tabindex="-1" role="main">
<div class="page-inner">
<section class="normal" id="section-">
<div id="page-not-found" class="section level1">
<h1>Page not found</h1>
<p>The page you requested cannot be found (perhaps it was moved or renamed).</p>
<p>You may want to try searching to find the page's new location, or use
the table of contents to find the page you are looking for.</p>
</div>
</section>
</div>
</div>
</div>
</div>
</div>
<script src="libs/gitbook-2.6.7/js/app.min.js"></script>
<script src="libs/gitbook-2.6.7/js/clipboard.min.js"></script>
<script src="libs/gitbook-2.6.7/js/plugin-search.js"></script>
<script src="libs/gitbook-2.6.7/js/plugin-sharing.js"></script>
<script src="libs/gitbook-2.6.7/js/plugin-fontsettings.js"></script>
<script src="libs/gitbook-2.6.7/js/plugin-bookdown.js"></script>
<script src="libs/gitbook-2.6.7/js/jquery.highlight.js"></script>
<script src="libs/gitbook-2.6.7/js/plugin-clipboard.js"></script>
<script>
gitbook.require(["gitbook"], function(gitbook) {
gitbook.start({
"sharing": {
"github": false,
"facebook": true,
"twitter": true,
"linkedin": false,
"weibo": false,
"instapaper": false,
"vk": false,
"whatsapp": false,
"all": ["facebook", "twitter", "linkedin", "weibo", "instapaper"]
},
"fontsettings": {
"theme": "white",
"family": "sans",
"size": 2
},
"edit": {
"link": null,
"text": null
},
"history": {
"link": null,
"text": null
},
"view": {
"link": null,
"text": null
},
"download": null,
"search": false,
"toc": {
"collapse": "section"
}
});
});
</script>
<!-- dynamically load mathjax for compatibility with self-contained -->
<script>
(function () {
var script = document.createElement("script");
script.type = "text/javascript";
var src = "true";
if (src === "" || src === "true") src = "https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.9/latest.js?config=TeX-MML-AM_CHTML";
if (location.protocol !== "file:")
if (/^https?:/.test(src))
src = src.replace(/^https?:/, '');
script.src = src;
document.getElementsByTagName("head")[0].appendChild(script);
})();
</script>
</body>
</html>