IRIs uniformation

[hothello]

• Added the script fixes.sh to automatically find and replace IRIs in non-standard formats:
  • :hex_hex_hex_hex_hex to :EMMO_hex_hex_hex_hex_hex
  • :EMMO_hex-hex-hex-hex-hex to :EMMO_hex_hex_hex_hex_hex
  • <http://emmo.info/emmo#hex_hex_hex_hex_hex> to :EMMO_hex_hex_hex_hex_hex
• Fixed typos in author's names, affiliations, countries, and formatted all entries in the same way.
• Changed triples double-quotes (""") to single ones (").
• Typo removed from the elucidation of hasSpatialTile.

[hothello]

A working note. As a lot of IRIs have changed, merging future branches could be time-consuming. I suggest applying the same rules before committing an merging future branches with the (updated) ./scripts/fixes.sh:

for i in $(find . -name "*ttl");
do
  # Convert the IRI with the format EMMO_hex-hex-hex-hex-hex.
  sed -i -E 's/EMMO_([0-9a-f]+)-([0-9a-f]+)-([0-9a-f]+)-([0-9a-f]+)-([0-9a-f]+)/EMMO_\1_\2_\3_\4_\5/g' "$i";
  # Convert the IRI without the EMMO_ prefix.
  sed -i -E 's/:([0-9a-f]+)_([0-9a-f]+)_([0-9a-f]+)_([0-9a-f]+)_([0-9a-f]+)/:EMMO_\1_\2_\3_\4_\5/g' "$i";
  # Convert the IRI with the format <http://emmo.info/emmo#hex_hex_hex_hex_hex>.
  sed -i -E 's/<http:\/\/emmo.info\/emmo#([0-9a-f]+)_([0-9a-f]+)_([0-9a-f]+)_([0-9a-f]+)_([0-9a-f]+)>/:EMMO_\1_\2_\3_\4_\5/g' "$i";
done

[jesper-friis]

Well spottet!
This one is most likely on me. Seems that the uuid module in Python uses hyphens instead of underscore.

[jesper-friis]

Good work Otello. I think that we should make a new release before merging this PR, since it changes a lot of IRIs.

It should probably also be time-wise close to the change to w3id's, such that domain ontologies can handle the IRI-changes in one go.

[hothello]

Good work Otello. I think that we should make a new release before merging this PR, since it changes a lot of IRIs.

It should probably also be time-wise close to the change to w3id's, such that domain ontologies can handle the IRI-changes in one go.

The fixes on the IRIs are automatic. We could ditch this branch entirely and only save the bash script, plus the corrections to the Ontology annotations (misspelled name, wrong/old affiliations, different formats), which is a trivial merge.

[jesper-friis]

Thanks Otello. The changes are fine.

I approve, but I wonder whether it would be smart to make a release and apply these changes to 1.0.0-beta6 to not make trouble for people already using 1.0.0-beta5.

[hothello]

I approve, but I wonder whether it would be smart to make a release and apply these changes to 1.0.0-beta6 to not make trouble for people already using 1.0.0-beta5.

It's a good idea to change the IRIs directly in the next beta release. Allow me to revert to the previous IRIs but keeping the corrections to the elucidations, then we can merge what remains to the beta5.

[jesper-friis]

I approve, but I wonder whether it would be smart to make a release and apply these changes to 1.0.0-beta6 to not make trouble for people already using 1.0.0-beta5.

It's a good idea to change the IRIs directly in the next beta release. Allow me to revert to the previous IRIs but keeping the corrections to the elucidations, then we can merge what remains to the beta5.

I don't think you need to do any changes. It is very easy to apply your PR to beta6 when we have released beta5.

[jesper-friis]

Please note: this branch is merged in to 1.0.0-beta6.

The PR is only kept here for reference.

[jesper-friis]

Closing - already merged into 1.0.0-beta7 and 1.0.0-final-dev-branch