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BIANA - A python framework for Biological Integration And Network Analysis

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Name		Name	Last commit message	Last commit date
Latest commit History 18 Commits
biana		biana
scripts		scripts
.gitignore		.gitignore
LICENSE		LICENSE
MANIFEST.in.bak		MANIFEST.in.bak
README		README
biana.bat		biana.bat
install.sh		install.sh
setup.py		setup.py

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biana
=====

BIANA - A python framework for Biological Integration And Network Analysis 

INSTALLATION

A- Installation with system administration previliges (which will install biana in site-packages of default Python interpreter):

$> ./install.sh

B- Installation without system administration previliges:

B-1-
 
$> ./install.sh <installation_path_with_permission_to_write>

B-2- Set/update PYTHONPATH enviroment variable (put below in profile if you want it remain persistent in further sessions)

$> export PYTHONPATH=$PYTHONPATH:<installation_path_with_permission_to_write>


RUNNING

To start using BIANA import biana library inside a Python script as follows:

$> python
>>> import biana
BIANA> 

If you get an import error check the INSTALLATION steps above.


DOCUMENTATION

Refer to BIANA tutorial in:
<biana_source_dir>/doc/tutorial

An extensive manual for BIANA is located at:
<biana_source_dir>/doc/


EXAMPLES

Some scripts to handle common administration tasks and some simple examples can be found at:

<biana_source_dir>/scripts/administration
<biana_source_dir>/scripts/examples

Alternatively you can access prepared scripts on sbi.imim.es/biana/scripts


MORE INFO

Visit http://sbi.imim.es/web/biana.php