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Failing to connect to sequence read database/server #37

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jwasmuth opened this issue Jul 5, 2018 · 3 comments
Closed

Failing to connect to sequence read database/server #37

jwasmuth opened this issue Jul 5, 2018 · 3 comments
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@jwasmuth
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jwasmuth commented Jul 5, 2018

I'm using enaDataGet (1.5) and have been for a while. As of yesterday, I cannot access the short read sets. A typical command is:

enaDataGet -f fastq -a ERR536833

I am able to download genome assemblies. I'm not sure why sequence reads is failing. Is there a server issue for these data or am I doing something wrong?

Thanks for your help

James

@suranjayathilaka
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Hi James,

Thanks for reporting this. It's an issue in one of the backend services and will be rectified EOD today.

Suran

@suranjayathilaka suranjayathilaka self-assigned this Jul 9, 2018
@suranjayathilaka
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Hi James,

I've made an update to the utils.py files that resolves this issue (release 1.5.2). Please update your checkout and try again.

Thanks!
Suran

@jwasmuth
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jwasmuth commented Jul 17, 2018 via email

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