Simplify conda installation

[karl616]

Hi,

would it be interesting to you to simplify the conda installation procedure?

I would be willing to help. There are a couple of things that could be done:

1. Add idr, phantompeakqualtools and picard-v2.10.6 to bioconda
2. See if it is possible to fix graphviz, otherwise enforce the anaconda version already in the environment file

My goal would be to be able to set up the environment directly from an environment file.

[karl616]

I started with an update to the idr recipe:
bioconda/bioconda-recipes#10112

[karl616]

Picard 2.10.6 is available in bioconda.

atac-seq-pipeline/installers/install_dependencies.sh

Lines 51 to 53 in 7ec10b6

	# install picard 2.10.6
	wget -N -c https://github.com/broadinstitute/picard/releases/download/2.10.6/picard.jar
	chmod +x picard.jar

The picard.jar file is present under the share folder. Perhaps it is possible to use this?

[karl616]

#22 should allow picard tools to be installed directly through conda instead

[leepc12]

Thanks for your work on this. We appreciate it. We can talk more on your PR.