Authentication of primary murine normal and pre-cancer hematopoietic progenitor cell lines by a microfluidics-based system.
Yingfen Hong , Nikita Nikita
, Stefanos Bamopoulos
, Enio Gjerga
, Laura Schmalbrock
, Markus Schick
, Ulrich Keller
, Matthias Wirth
Department of Hematology, Oncology and Tumor Immunology, Campus Benjamin Franklin, Charité - Universitätsmedizin Berlin, Hindenburgdamm 30, 12203 Berlin, Germany.
TUM School of Medicine, Technical University Munich, 81675 Munich, Germany.
German Cancer Research Center (DKFZ) and German Cancer Consortium (DKTK), 69120 Heidelberg, Germany.
Max-Delbrück-Center for Molecular Medicine, 13092 Berlin, Germany
Manuscript submitted in the International Journal of Cancer.
Codes are written in R (stored as a notebook in the .Rmd file) from which results and progress of the analysis together with plots are shown in the pdf and html preview files.
The data for the analysis is stored in src/. The separate PCA and Correlation heatmap plots of the correlation analysis are stored in the output_plots/ directory.
Enio Gjerga, 2020