Pipeline to clean, align, and prepare sequence data for WGS analyses
These scripts work only for members of the Bernatchez lab on the katak and manitou servers. They will require modifications and software installation to work under other circumstances.
- Scripts 03 to 08 are based on scripts by Clément Rougeux
- Script 09 is based on a script by Nina Overgaard Therkildsen
Run each script in 01_scripts individually or adjust the SLURM job values
in runall.sh and launch:
./runall.shMIT License
Copyright (c) 2018 Eric Normandeau
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