Automatic builds publishing to http://ngb.opensource.epam.com/distr #10
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SilinPavel
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Sep 21, 2021
* searchRegionMotif implemented * searchChromosomeMotif implemented * offset argument added to method search * wrong bounds in searchChromosomeMotifs fixed * chromosome search algorithm completed * checkstyle applied, stubs in MotifSearchManager deleted * include sequence flag and its handling added, sliding window parameter added, strand value handling rule replaced to nullable * include sequence flag and its handling added, sliding window parameter added, strand value handling rule replaced to nullable * blast server url property cleaned * end position assertion added * checkstyle requirements applied * checkstyle requirements applied * slidingWindow checking added * application.properties completed, default values provided * review-related changes completed * end chromosome position handling fixed * error messages added, end position in searchResult adjusted * code style fix * resolves merge issues * resolves merge issues 2 * fixes bug - include sequence flag setting in chromosome search * test covers general cases in region and chromosome search * eliminates redundant null checking end position in region search * style-related fixes * adds base test * simplifies test chromosome reading * implements testing chromosome search with variate buffers * fixes page size typo in chromosome search with variate buffers test * add license * implements test case when matches are not founded * renames test methods * implements test cases for chromosome and region * implements test case in MotifSearchManagerTest when motif matches were not found in reference * fixes code style in MotifSearcherTest and MotifSearchManagerValidationTest * implements controller method test - getting motif table method * implements controller method test - getting motif track method * replaces .fai test resource files with valid files
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Description
Background
Previously we had to manually copy distributions to the distr location. This produced some extra work and could lead to mistakes when performed by human.
This PR adds automatic publishing routine.
Changes
masterbranch is published to http://ngb.opensource.epam.com/distr (bothlatestandversionedfolders)developbranch is published to http://ngb.opensource.epam.com/distr/dev (bothlatestandversionedfolders as well)ngb-docsandngb-clidistribution archives are now made equal (.tar.gz)Check list